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VTO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NC5doub1.32Å1.31ÅAromatic
NC6sing1.32Å1.35ÅAromatic
C5C4sing1.38Å1.35ÅAromatic
N1C6sing1.39Å1.34Å
C6C7doub1.39Å1.35ÅAromatic
C4C3doub1.40Å1.35ÅAromatic
C7C3sing1.40Å1.37ÅAromatic
C3C2sing1.48Å1.44Å
C2Osing1.35Å1.33Å
C2O1doub1.21Å1.22Å
OC1sing1.45Å1.38Å
C1Csing1.53Å1.50Å
N1H1sing0.97Å1.00Å
N1H2sing0.97Å1.00Å
C7H3sing1.08Å1.08Å
C1H4sing1.09Å1.10Å
C1H5sing1.09Å1.10Å
C5H6sing1.08Å1.08Å
C4H7sing1.08Å1.08Å
CH8sing1.09Å1.10Å
CH9sing1.09Å1.10Å
CH10sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5NC6117.6°121.9°
NC5C4124.7°121.0°
NC5H6117.6°119.5°
NC6N1118.0°119.6°
NC6C7122.5°120.7°
C5C4C3115.6°119.2°
C4C5H6117.7°119.5°
C5C4H7122.2°120.4°
N1C6C7119.5°119.7°
C6N1H1109.5°120.0°
C6N1H2109.5°120.0°
C6C7C3116.4°118.9°
C6C7H3121.8°120.5°
C4C3C7123.3°118.2°
C4C3C2121.2°120.9°
C3C4H7122.2°120.4°
C7C3C2115.4°120.9°
C3C7H3121.8°120.6°
C3C2O111.5°120.0°
C3C2O1125.2°120.1°
OC2O1123.4°120.0°
C2OC1117.0°117.0°
OC1C106.6°109.5°
OC1H4110.2°109.5°
OC1H5110.2°109.5°
CC1H4110.2°109.4°
CC1H5110.2°109.4°
C1CH8109.5°109.4°
C1CH9109.5°109.4°
C1CH10109.5°109.5°
H1N1H2109.5°120.0°
H4C1H5109.5°109.5°
H8CH9109.4°109.5°
H8CH10109.5°109.5°
H9CH10109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NC5C4H6180.0°179.6°
C5NC6N1179.8°180.0°
C5NC6C70.2°0.0°
NC5C4C30.4°0.5°
NC5C4H7179.6°179.4°
C6NC5C40.3°0.2°
NC6N1C7180.0°180.0°
NC6C7C30.6°0.0°
NC6N1H10.0°180.0°
NC6N1H2120.0°0.3°
NC6C7H3179.4°179.7°
C6NC5H6179.7°179.8°
C5C4C3H7180.0°179.9°
C5C4C3C71.3°0.5°
C5C4C3C2175.8°179.5°
N1C6C7C3179.3°180.0°
C6N1H1H2120.0°179.7°
N1C6C7H30.7°0.3°
C6C7C3C41.5°0.2°
C6C7C3H3180.0°179.7°
C6C7C3C2175.8°179.8°
C7C6N1H1180.0°0.0°
C7C6N1H259.9°179.7°
C4C3C7C2177.3°180.0°
C4C3C2O13.9°0.0°
C4C3C2O1164.3°179.9°
C4C3C7H3178.6°180.0°
C3C4C5H6179.6°180.0°
C7C3C2O168.8°180.0°
C7C3C2O113.1°0.1°
C7C3C4H7178.6°179.5°
C3C2OO1178.2°179.9°
C3C2OC1179.1°180.0°
C2C3C7H34.1°0.0°
C2C3C4H74.2°0.5°
C2OC1C60.5°180.0°
C2OC1H459.0°60.0°
C2OC1H5179.9°60.0°
O1C2OC12.6°0.0°
OC1CH4119.5°120.1°
OC1CH5119.5°120.0°
OC1H4H5121.3°120.0°
OC1CH8180.0°59.9°
OC1CH960.0°60.0°
OC1CH1060.0°180.0°
CC1H4H5121.4°119.9°
C1CH8H9120.0°119.9°
C1CH8H10120.0°120.1°
C1CH9H10120.0°120.1°
H4C1CH860.5°NaN°
H4C1CH9179.5°60.1°
H4C1CH1059.5°59.9°
H5C1CH860.4°60.1°
H5C1CH959.5°180.0°
H5C1CH10179.6°60.0°
H6C5C4H70.4°0.1°
H8CH9H10120.0°120.0°

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PDB entries from 2024-07-10

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