VT7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.20Å | |
| C2 | N3 | sing | 1.35Å | 1.33Å | |
| C2 | N1 | sing | 1.35Å | 1.33Å | |
| N3 | C4 | sing | 1.35Å | 1.34Å | |
| C2' | C1' | sing | 1.55Å | 1.29Å | |
| C2' | C3' | sing | 1.54Å | 1.54Å | |
| C1' | N1 | sing | 1.47Å | 1.45Å | |
| C1' | O4' | sing | 1.44Å | 1.61Å | |
| N1 | C6 | sing | 1.37Å | 1.32Å | |
| O3' | C3' | sing | 1.43Å | 1.38Å | |
| C4 | O4 | doub | 1.22Å | 1.43Å | |
| C4 | C5 | sing | 1.42Å | 1.40Å | |
| C3' | C4' | sing | 1.54Å | 1.54Å | |
| O4' | C4' | sing | 1.44Å | 1.29Å | |
| C6 | C5 | doub | 1.35Å | 1.40Å | |
| C4' | C5' | sing | 1.53Å | 1.58Å | |
| C5 | C5M | sing | 1.51Å | 1.51Å | |
| O2B | PB | doub | 1.48Å | 1.52Å | |
| C5' | O5' | sing | 1.43Å | 1.46Å | |
| O5' | PA | sing | 1.61Å | 1.61Å | |
| PB | O3A | sing | 1.61Å | 1.60Å | |
| PB | O1B | sing | 1.61Å | 1.53Å | |
| PB | C3B | sing | 1.82Å | 1.85Å | |
| O3A | PA | sing | 1.61Å | 1.57Å | |
| F3B | C3B | sing | 1.40Å | 1.35Å | |
| PA | O2A | doub | 1.48Å | 1.52Å | |
| PA | O1A | sing | 1.61Å | 1.51Å | |
| C3B | F2B | sing | 1.40Å | 1.36Å | |
| C3B | PG | sing | 1.82Å | 1.85Å | |
| O3G | PG | doub | 1.48Å | 1.49Å | |
| PG | O1G | sing | 1.61Å | 1.51Å | |
| PG | O2G | sing | 1.61Å | 1.46Å | |
| C5M | H1 | sing | 1.09Å | 1.10Å | |
| C5M | H2 | sing | 1.09Å | 1.10Å | |
| C5M | H3 | sing | 1.09Å | 1.10Å | |
| C6 | H4 | sing | 1.08Å | 1.08Å | |
| N3 | H5 | sing | 0.97Å | 1.00Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| O3' | H10 | sing | 0.97Å | 0.95Å | |
| C4' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| C5' | H13 | sing | 1.09Å | 1.10Å | |
| O1A | H14 | sing | 0.97Å | 0.95Å | |
| O1B | H15 | sing | 0.97Å | 0.95Å | |
| O2G | H16 | sing | 0.97Å | 0.95Å | |
| O1G | H17 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 118.7° | 119.6° |
| O2 | C2 | N1 | 118.4° | 119.5° |
| N3 | C2 | N1 | 122.9° | 120.9° |
| C2 | N3 | C4 | 119.5° | 120.3° |
| C2 | N3 | H5 | 120.2° | 119.8° |
| C2 | N1 | C1' | 121.5° | 119.7° |
| C2 | N1 | C6 | 119.9° | 120.6° |
| N3 | C4 | O4 | 121.7° | 120.3° |
| N3 | C4 | C5 | 120.2° | 119.4° |
| C4 | N3 | H5 | 120.2° | 119.9° |
| C1' | C2' | C3' | 106.4° | 104.1° |
| C2' | C1' | N1 | 109.0° | 110.4° |
| C2' | C1' | O4' | 106.3° | 104.8° |
| C2' | C1' | H6 | 113.0° | 110.5° |
| C1' | C2' | H7 | 110.2° | 110.4° |
| C1' | C2' | H8 | 110.2° | 110.5° |
| C2' | C3' | O3' | 115.9° | 110.5° |
| C2' | C3' | C4' | 101.3° | 104.1° |
| C3' | C2' | H7 | 110.2° | 110.5° |
| C3' | C2' | H8 | 110.2° | 110.6° |
| C2' | C3' | H9 | 107.9° | 110.5° |
| N1 | C1' | O4' | 110.0° | 110.3° |
| C1' | N1 | C6 | 118.5° | 119.6° |
| N1 | C1' | H6 | 110.3° | 110.4° |
| C1' | O4' | C4' | 108.2° | 105.3° |
| O4' | C1' | H6 | 108.2° | 110.4° |
| N1 | C6 | C5 | 120.7° | 119.7° |
| N1 | C6 | H4 | 119.6° | 120.2° |
| O3' | C3' | C4' | 113.2° | 110.5° |
| O3' | C3' | H9 | 110.1° | 110.5° |
| C3' | O3' | H10 | 109.5° | 114.0° |
| O4 | C4 | C5 | 118.1° | 120.4° |
| C4 | C5 | C6 | 116.8° | 119.1° |
| C4 | C5 | C5M | 122.7° | 120.4° |
| C3' | C4' | O4' | 103.4° | 104.8° |
| C3' | C4' | C5' | 109.9° | 110.4° |
| C4' | C3' | H9 | 107.9° | 110.5° |
| C3' | C4' | H11 | 109.4° | 110.4° |
| O4' | C4' | C5' | 111.8° | 110.3° |
| O4' | C4' | H11 | 113.4° | 110.4° |
| C6 | C5 | C5M | 120.5° | 120.5° |
| C5 | C6 | H4 | 119.6° | 120.2° |
| C4' | C5' | O5' | 108.8° | 109.5° |
| C5' | C4' | H11 | 108.9° | 110.4° |
| C4' | C5' | H12 | 109.6° | 109.4° |
| C4' | C5' | H13 | 109.6° | 109.5° |
| C5 | C5M | H1 | 109.5° | 109.5° |
| C5 | C5M | H2 | 109.5° | 109.5° |
| C5 | C5M | H3 | 109.5° | 109.5° |
| O2B | PB | O3A | 106.1° | 109.5° |
| O2B | PB | O1B | 107.4° | 109.5° |
| O2B | PB | C3B | 107.7° | 109.5° |
| C5' | O5' | PA | 118.4° | 123.0° |
| O5' | C5' | H12 | 109.6° | 109.5° |
| O5' | C5' | H13 | 109.6° | 109.5° |
| O5' | PA | O3A | 109.0° | 109.5° |
| O5' | PA | O2A | 109.4° | 109.5° |
| O5' | PA | O1A | 109.8° | 109.5° |
| O3A | PB | O1B | 112.3° | 109.4° |
| O3A | PB | C3B | 108.0° | 109.4° |
| PB | O3A | PA | 130.3° | 134.0° |
| O1B | PB | C3B | 114.9° | 109.5° |
| PB | O1B | H15 | 109.5° | 114.0° |
| PB | C3B | F3B | 109.9° | 109.5° |
| PB | C3B | F2B | 110.1° | 109.5° |
| PB | C3B | PG | 107.3° | 109.4° |
| O3A | PA | O2A | 105.4° | 109.5° |
| O3A | PA | O1A | 112.1° | 109.5° |
| F3B | C3B | F2B | 109.9° | 109.5° |
| F3B | C3B | PG | 105.5° | 109.5° |
| O2A | PA | O1A | 111.0° | 109.5° |
| PA | O1A | H14 | 109.5° | 114.1° |
| F2B | C3B | PG | 114.0° | 109.5° |
| C3B | PG | O3G | 109.0° | 109.5° |
| C3B | PG | O1G | 105.5° | 109.5° |
| C3B | PG | O2G | 110.4° | 109.5° |
| O3G | PG | O1G | 109.5° | 109.5° |
| O3G | PG | O2G | 108.7° | 109.4° |
| O1G | PG | O2G | 113.7° | 109.4° |
| PG | O1G | H17 | 109.5° | 114.0° |
| PG | O2G | H16 | 109.5° | 114.0° |
| H1 | C5M | H2 | 109.4° | 109.5° |
| H1 | C5M | H3 | 109.5° | 109.5° |
| H2 | C5M | H3 | 109.5° | 109.4° |
| H7 | C2' | H8 | 109.5° | 110.6° |
| H12 | C5' | H13 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.1° | 180.0° |
| O2 | C2 | N3 | C4 | 178.8° | 180.0° |
| O2 | C2 | N1 | C1' | 1.7° | 0.0° |
| O2 | C2 | N1 | C6 | 178.2° | 179.7° |
| O2 | C2 | N3 | H5 | 1.2° | 0.1° |
| C2 | N3 | C4 | H5 | 180.0° | 179.9° |
| N3 | C2 | N1 | C1' | 177.4° | 180.0° |
| N3 | C2 | N1 | C6 | 0.9° | 0.3° |
| C2 | N3 | C4 | O4 | 179.5° | 180.0° |
| C2 | N3 | C4 | C5 | 0.6° | 0.3° |
| N1 | C2 | N3 | C4 | 0.3° | 0.0° |
| C2 | N1 | C1' | C2' | 96.3° | 61.8° |
| C2 | N1 | C1' | C6 | 176.5° | 179.7° |
| C2 | N1 | C1' | O4' | 147.5° | 53.5° |
| C2 | N1 | C6 | C5 | 0.8° | 0.4° |
| C2 | N1 | C6 | H4 | 179.2° | 179.8° |
| N1 | C2 | N3 | H5 | 179.8° | 179.9° |
| C2 | N1 | C1' | H6 | 28.2° | 175.8° |
| N3 | C4 | O4 | C5 | 178.9° | 179.7° |
| N3 | C4 | C5 | C6 | 0.7° | 0.2° |
| N3 | C4 | C5 | C5M | 179.5° | 179.7° |
| C1' | C2' | C3' | H7 | 119.5° | 118.6° |
| C1' | C2' | C3' | H8 | 119.5° | 118.7° |
| C2' | C1' | N1 | O4' | 116.1° | 115.3° |
| C2' | C1' | N1 | H6 | 124.6° | 122.4° |
| C2' | C1' | O4' | H6 | 121.6° | 119.0° |
| C2' | C1' | N1 | C6 | 80.2° | 117.9° |
| C1' | C2' | C3' | O3' | 156.4° | 118.6° |
| C1' | C2' | C3' | C4' | 33.5° | 0.0° |
| C2' | C1' | O4' | C4' | 7.2° | 40.6° |
| C1' | C2' | H7 | H8 | 121.4° | 122.6° |
| C1' | C2' | C3' | H9 | 79.6° | 118.7° |
| C3' | C2' | C1' | N1 | 100.8° | 142.8° |
| C3' | C2' | C1' | O4' | 17.6° | 24.0° |
| C2' | C3' | O3' | C4' | 116.4° | 114.7° |
| C2' | C3' | O3' | H9 | 122.8° | 122.6° |
| C2' | C3' | C4' | H9 | 113.2° | 118.7° |
| C2' | C3' | C4' | O4' | 37.5° | 24.0° |
| C2' | C3' | C4' | C5' | 156.9° | 142.8° |
| C3' | C2' | C1' | H6 | 136.2° | 94.9° |
| C3' | C2' | H7 | H8 | 121.4° | 122.8° |
| C2' | C3' | O3' | H10 | 138.6° | 61.4° |
| C2' | C3' | C4' | H11 | 83.6° | 94.9° |
| N1 | C1' | O4' | H6 | 120.6° | 122.3° |
| N1 | C1' | O4' | C4' | 125.0° | 159.4° |
| C1' | N1 | C6 | C5 | 177.3° | 180.0° |
| C1' | N1 | C6 | H4 | 2.7° | 0.1° |
| N1 | C1' | C2' | H7 | 139.7° | 98.6° |
| N1 | C1' | C2' | H8 | 18.7° | 24.1° |
| O4' | C1' | N1 | C6 | 36.0° | 126.8° |
| C1' | O4' | C4' | C3' | 27.8° | 40.6° |
| C1' | O4' | C4' | C5' | 146.0° | 159.4° |
| O4' | C1' | C2' | H7 | 101.9° | 142.7° |
| O4' | C1' | C2' | H8 | 137.1° | 94.7° |
| C1' | O4' | C4' | H11 | 90.5° | 78.3° |
| N1 | C6 | C5 | C4 | 0.0° | 0.1° |
| N1 | C6 | C5 | H4 | 180.0° | 179.9° |
| N1 | C6 | C5 | C5M | 179.9° | 180.0° |
| C6 | N1 | C1' | H6 | 155.3° | 4.5° |
| O3' | C3' | C4' | H9 | 122.0° | 122.7° |
| O3' | C3' | C4' | O4' | 162.2° | 142.7° |
| O3' | C3' | C4' | C5' | 78.4° | 98.6° |
| O3' | C3' | C2' | H7 | 36.9° | 0.0° |
| O3' | C3' | C2' | H8 | 84.1° | 122.7° |
| O3' | C3' | C4' | H11 | 41.2° | 23.8° |
| O4 | C4 | C5 | C6 | 179.6° | 179.9° |
| O4 | C4 | C5 | C5M | 0.5° | 0.0° |
| O4 | C4 | N3 | H5 | 0.5° | 0.1° |
| C4 | C5 | C6 | C5M | 179.9° | 179.9° |
| C4 | C5 | C5M | H1 | 180.0° | 0.0° |
| C4 | C5 | C5M | H2 | 60.0° | 120.0° |
| C4 | C5 | C5M | H3 | 60.0° | 120.1° |
| C4 | C5 | C6 | H4 | 180.0° | 180.0° |
| C5 | C4 | N3 | H5 | 179.4° | 179.8° |
| C3' | C4' | O4' | C5' | 118.1° | 118.8° |
| C3' | C4' | O4' | H11 | 118.3° | 118.8° |
| C3' | C4' | C5' | H11 | 119.8° | 122.3° |
| C3' | C4' | C5' | O5' | 61.9° | 175.0° |
| C4' | C3' | C2' | H7 | 86.0° | 118.6° |
| C4' | C3' | C2' | H8 | 153.0° | 118.6° |
| C4' | C3' | O3' | H10 | 105.0° | 176.1° |
| C3' | C4' | C5' | H12 | 178.2° | 55.0° |
| C3' | C4' | C5' | H13 | 58.0° | 65.0° |
| O4' | C4' | C5' | H11 | 126.0° | 122.3° |
| O4' | C4' | C5' | O5' | 52.3° | 69.7° |
| C4' | O4' | C1' | H6 | 114.4° | 78.4° |
| O4' | C4' | C3' | H9 | 75.8° | 94.7° |
| O4' | C4' | C5' | H12 | 67.6° | 170.3° |
| O4' | C4' | C5' | H13 | 172.2° | 50.4° |
| C6 | C5 | C5M | H1 | 0.2° | 180.0° |
| C6 | C5 | C5M | H2 | 120.2° | 59.9° |
| C6 | C5 | C5M | H3 | 119.9° | 60.0° |
| C4' | C5' | O5' | H12 | 119.9° | 120.0° |
| C4' | C5' | O5' | H13 | 119.9° | 120.0° |
| C4' | C5' | O5' | PA | 135.8° | 180.0° |
| C5' | C4' | C3' | H9 | 43.7° | 24.1° |
| C4' | C5' | H12 | H13 | 120.3° | 120.0° |
| C5 | C5M | H1 | H2 | 120.0° | 120.0° |
| C5 | C5M | H1 | H3 | 120.0° | 120.0° |
| C5 | C5M | H2 | H3 | 120.0° | 120.0° |
| C5M | C5 | C6 | H4 | 0.1° | 0.1° |
| O2B | PB | O3A | O1B | 117.1° | 120.0° |
| O2B | PB | O3A | C3B | 115.2° | 120.0° |
| O2B | PB | O1B | C3B | 119.9° | 120.1° |
| O2B | PB | O3A | PA | 134.3° | 60.0° |
| O2B | PB | C3B | F3B | 29.9° | 180.0° |
| O2B | PB | C3B | F2B | 91.3° | 59.9° |
| O2B | PB | C3B | PG | 144.2° | 60.0° |
| O2B | PB | O1B | H15 | 0.0° | 180.0° |
| C5' | O5' | PA | O3A | 70.9° | 175.0° |
| C5' | O5' | PA | O2A | 174.4° | 55.0° |
| C5' | O5' | PA | O1A | 52.3° | 65.0° |
| O5' | C5' | C4' | H11 | 178.3° | 52.7° |
| O5' | C5' | H12 | H13 | 120.3° | 120.0° |
| O5' | PA | O3A | PB | 104.7° | 165.0° |
| O5' | PA | O3A | O2A | 117.3° | 120.0° |
| O5' | PA | O3A | O1A | 121.8° | 120.0° |
| O5' | PA | O2A | O1A | 121.3° | 120.0° |
| PA | O5' | C5' | H12 | 104.3° | 60.0° |
| PA | O5' | C5' | H13 | 16.0° | 60.0° |
| O5' | PA | O1A | H14 | 121.1° | 60.0° |
| O3A | PB | O1B | C3B | 123.9° | 119.9° |
| O3A | PB | C3B | F3B | 144.1° | 60.0° |
| PB | O3A | PA | O2A | 138.0° | 45.0° |
| PB | O3A | PA | O1A | 17.1° | 75.0° |
| O3A | PB | C3B | F2B | 22.9° | 60.1° |
| O3A | PB | C3B | PG | 101.7° | 180.0° |
| O3A | PB | O1B | H15 | 116.3° | 60.0° |
| O1B | PB | O3A | PA | 17.3° | 60.0° |
| O1B | PB | C3B | F3B | 89.8° | 59.9° |
| O1B | PB | C3B | F2B | 149.0° | 180.0° |
| O1B | PB | C3B | PG | 24.5° | 60.0° |
| C3B | PB | O3A | PA | 110.4° | 180.0° |
| PB | C3B | F3B | F2B | 121.3° | 120.0° |
| PB | C3B | F3B | PG | 115.4° | 119.9° |
| PB | C3B | F2B | PG | 120.6° | 119.9° |
| PB | C3B | PG | O3G | 72.8° | 60.0° |
| PB | C3B | PG | O1G | 44.7° | 60.0° |
| PB | C3B | PG | O2G | 167.9° | 180.0° |
| C3B | PB | O1B | H15 | 119.8° | 59.9° |
| O3A | PA | O2A | O1A | 121.6° | 120.0° |
| O3A | PA | O1A | H14 | 117.5° | 60.0° |
| F3B | C3B | F2B | PG | 118.2° | 120.1° |
| F3B | C3B | PG | O3G | 44.3° | 180.0° |
| F3B | C3B | PG | O1G | 161.8° | 59.9° |
| F3B | C3B | PG | O2G | 75.0° | 60.0° |
| O2A | PA | O1A | H14 | 0.0° | 180.0° |
| F2B | C3B | PG | O3G | 165.0° | 59.9° |
| F2B | C3B | PG | O1G | 77.5° | 180.0° |
| F2B | C3B | PG | O2G | 45.7° | 60.0° |
| C3B | PG | O3G | O1G | 115.0° | 120.0° |
| C3B | PG | O3G | O2G | 120.3° | 120.0° |
| C3B | PG | O1G | O2G | 121.1° | 120.0° |
| C3B | PG | O2G | H16 | 119.5° | 180.0° |
| C3B | PG | O1G | H17 | 117.2° | 60.0° |
| O3G | PG | O1G | O2G | 121.8° | 120.0° |
| O3G | PG | O2G | H16 | 0.0° | 60.0° |
| O3G | PG | O1G | H17 | 0.0° | 180.0° |
| O1G | PG | O2G | H16 | 122.2° | 60.0° |
| O2G | PG | O1G | H17 | 121.8° | 60.0° |
| H1 | C5M | H2 | H3 | 120.0° | 120.0° |
| H6 | C1' | C2' | H7 | 16.7° | 23.8° |
| H6 | C1' | C2' | H8 | 104.3° | 146.4° |
| H7 | C2' | C3' | H9 | 160.9° | 122.7° |
| H8 | C2' | C3' | H9 | 39.8° | 0.0° |
| H9 | C3' | O3' | H10 | 15.8° | 61.2° |
| H9 | C3' | C4' | H11 | 163.2° | 146.5° |
| H11 | C4' | C5' | H12 | 58.4° | 67.3° |
| H11 | C4' | C5' | H13 | 61.8° | 172.7° |
