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Summary Geometry Related PDB entries

VSO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	S2	sing	1.52Å	1.44Å
O1	HO1	sing	0.97Å	0.95Å
S2	C3	sing	1.76Å	1.72Å
S2	O8	doub	1.42Å	1.44Å
S2	O9	doub	1.42Å	1.44Å
C3	C4	doub	1.31Å	1.34Å
C3	H3	sing	1.08Å	1.10Å
C4	H41	sing	1.08Å	1.10Å
C4	H42	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S2	O1	HO1	103.7°	106.8°
O1	S2	C3	103.7°	107.4°
O1	S2	O8	114.7°	105.8°
O1	S2	O9	114.6°	105.8°
C3	S2	O8	103.7°	105.7°
C3	S2	O9	103.6°	105.8°
S2	C3	C4	119.5°	120.0°
S2	C3	H3	132.2°	120.0°
O8	S2	O9	114.5°	125.4°
C4	C3	H3	108.3°	120.0°
C3	C4	H41	108.3°	120.0°
C3	C4	H42	119.5°	120.0°
H41	C4	H42	132.2°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	S2	C3	O8	120.1°	112.6°
O1	S2	C3	O9	120.0°	112.6°
O1	S2	O8	O9	135.5°	123.2°
O1	S2	C3	C4	177.7°	119.9°
O1	S2	C3	H3	2.4°	60.0°
HO1	O1	S2	C3	180.0°	179.9°
HO1	O1	S2	O8	67.7°	67.5°
HO1	O1	S2	O9	67.7°	67.3°
C3	S2	O8	O9	112.2°	123.1°
S2	C3	C4	H3	179.9°	179.9°
S2	C3	C4	H41	0.0°	179.9°
S2	C3	C4	H42	180.0°	0.0°
O8	S2	C3	C4	57.6°	7.3°
O8	S2	C3	H3	122.5°	172.6°
O9	S2	C3	C4	62.3°	127.4°
O9	S2	C3	H3	117.7°	52.7°
C3	C4	H41	H42	179.9°	180.0°
H3	C3	C4	H41	179.9°	0.0°
H3	C3	C4	H42	0.0°	179.9°

249697

PDB entries from 2026-02-25

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