Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

VSG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CARCASsing1.53Å1.52Å
CARCAQsing1.53Å1.53Å
C2N3doub1.32Å1.34ÅAromatic
C2N1sing1.32Å1.34ÅAromatic
CASNATsing1.47Å1.45Å
CAWNATsing1.47Å1.46Å
N3C4sing1.33Å1.36ÅAromatic
N1C6doub1.33Å1.36ÅAromatic
C4NAGsing1.37Å1.34ÅAromatic
C4C5doub1.41Å1.40ÅAromatic
CAQNAGsing1.47Å1.49Å
CAQCAVsing1.53Å1.53Å
NATCAUsing1.47Å1.46Å
C6C5sing1.40Å1.41ÅAromatic
C6NAKsing1.38Å1.36Å
NAGCAHsing1.37Å1.35ÅAromatic
C5CAIsing1.47Å1.41ÅAromatic
CAPCAOdoub1.38Å1.39ÅAromatic
CAPCAJsing1.39Å1.39ÅAromatic
CAHCAIdoub1.35Å1.39ÅAromatic
CAICAJsing1.48Å1.50Å
CAOCANsing1.39Å1.39ÅAromatic
CAJCALdoub1.39Å1.40ÅAromatic
CAUCAVsing1.53Å1.53Å
CANOAXsing1.36Å1.38Å
CANCAMdoub1.39Å1.40ÅAromatic
OAXCAYsing1.36Å1.38Å
CALCAMsing1.38Å1.40ÅAromatic
CAYCAZdoub1.39Å1.40ÅAromatic
CAYCBDsing1.39Å1.39ÅAromatic
CAZCBAsing1.38Å1.39ÅAromatic
CBDCBCdoub1.38Å1.40ÅAromatic
CBACBBdoub1.38Å1.39ÅAromatic
CBCCBBsing1.38Å1.39ÅAromatic
CARH1sing1.09Å1.10Å
CARH2sing1.09Å1.10Å
CASH3sing1.09Å1.10Å
CASH4sing1.09Å1.10Å
CAWH6sing1.09Å1.10Å
CAWH7sing1.09Å1.10Å
CAWH8sing1.09Å1.10Å
CAUH9sing1.09Å1.10Å
CAUH10sing1.09Å1.10Å
CAVH11sing1.09Å1.10Å
CAVH12sing1.09Å1.10Å
CAQH13sing1.09Å1.10Å
CAHH14sing1.08Å1.08Å
C2H15sing1.08Å1.08Å
NAKH16sing0.97Å1.00Å
NAKH17sing0.97Å1.00Å
CAPH18sing1.08Å1.08Å
CAOH19sing1.08Å1.08Å
CALH20sing1.08Å1.08Å
CAMH21sing1.08Å1.08Å
CAZH22sing1.08Å1.08Å
CBAH23sing1.08Å1.08Å
CBBH24sing1.08Å1.08Å
CBCH25sing1.08Å1.08Å
CBDH26sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CASCARCAQ114.2°109.2°
CARCASNAT105.8°109.5°
CASCARH1108.3°109.5°
CASCARH2108.3°109.5°
CARCASH3110.4°109.4°
CARCASH4110.4°109.4°
CARCAQNAG109.5°109.5°
CARCAQCAV111.3°109.2°
CAQCARH1108.3°109.5°
CAQCARH2108.2°109.5°
CARCAQH13108.9°109.5°
N3C2N1121.3°122.7°
C2N3C4120.5°120.7°
N3C2H15119.4°118.6°
C2N1C6121.2°121.0°
N1C2H15119.4°118.7°
CASNATCAW119.8°111.0°
CASNATCAU120.2°111.2°
NATCASH3110.4°109.5°
NATCASH4110.4°109.5°
CAWNATCAU120.1°111.0°
NATCAWH6109.5°109.5°
NATCAWH7109.5°109.5°
NATCAWH8109.4°109.5°
N3C4NAG130.7°134.1°
N3C4C5120.0°118.5°
N1C6C5119.3°118.3°
N1C6NAK117.8°120.8°
NAGC4C5109.3°107.4°
C4NAGCAQ125.7°124.9°
C4NAGCAH108.8°110.3°
C4C5C6117.8°118.7°
C4C5CAI106.1°106.2°
NAGCAQCAV108.8°109.5°
CAQNAGCAH125.5°124.9°
NAGCAQH13109.4°109.5°
CAQCAVCAU114.2°109.3°
CAQCAVH11108.3°109.5°
CAQCAVH12108.3°109.5°
CAVCAQH13108.9°109.6°
NATCAUCAV108.3°109.6°
NATCAUH9109.8°109.5°
NATCAUH10109.8°109.5°
C5C6NAK123.0°120.8°
C6C5CAI136.1°135.1°
C6NAKH16109.5°120.0°
C6NAKH17109.4°120.0°
NAGCAHCAI109.5°109.6°
NAGCAHH14125.2°125.1°
C5CAICAH106.3°106.6°
C5CAICAJ130.5°126.7°
CAOCAPCAJ121.4°119.9°
CAPCAOCAN120.4°120.1°
CAOCAPH18119.3°120.0°
CAPCAOH19119.8°120.0°
CAPCAJCAI119.5°120.0°
CAPCAJCAL118.4°119.9°
CAJCAPH18119.3°120.1°
CAHCAICAJ123.1°126.7°
CAICAHH14125.3°125.2°
CAICAJCAL121.9°120.1°
CAOCANOAX118.3°119.9°
CAOCANCAM118.7°120.1°
CANCAOH19119.8°119.9°
CAJCALCAM120.2°119.9°
CAJCALH20119.9°120.0°
CAVCAUH9109.8°109.5°
CAVCAUH10109.8°109.4°
CAUCAVH11108.3°109.5°
CAUCAVH12108.3°109.5°
OAXCANCAM122.8°119.9°
CANOAXCAY127.9°117.9°
CANCAMCAL120.8°120.1°
CANCAMH21119.6°119.9°
OAXCAYCAZ119.2°120.1°
OAXCAYCBD121.8°120.0°
CAMCALH20119.9°120.0°
CALCAMH21119.6°120.0°
CAZCAYCBD119.0°119.9°
CAYCAZCBA120.7°119.9°
CAYCAZH22119.6°120.0°
CAYCBDCBC120.5°119.9°
CAYCBDH26119.8°120.0°
CAZCBACBB120.1°120.1°
CBACAZH22119.6°120.0°
CAZCBAH23120.0°119.9°
CBDCBCCBB120.3°120.1°
CBDCBCH25119.8°120.0°
CBCCBDH26119.8°120.0°
CBACBBCBC119.5°120.1°
CBBCBAH23120.0°120.0°
CBACBBH24120.3°120.0°
CBCCBBH24120.3°119.9°
CBBCBCH25119.9°120.0°
H1CARH2109.5°109.6°
H3CASH4109.5°109.5°
H6CAWH7109.5°109.5°
H6CAWH8109.5°109.5°
H7CAWH8109.5°109.4°
H9CAUH10109.5°109.4°
H11CAVH12109.5°109.5°
H16NAKH17109.5°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CASCARCAQH1120.7°120.0°
CASCARCAQH2120.7°119.9°
CARCASNATH3119.4°120.0°
CARCASNATH4119.4°120.0°
CARCASNATCAW118.5°174.2°
CASCARCAQNAG124.3°177.5°
CASCARCAQCAV3.9°57.7°
CARCASNATCAU63.2°61.7°
CASCARH1H2117.8°120.1°
CARCASH3H4121.8°119.9°
CASCARCAQH13116.1°62.4°
CAQCARCASNAT48.0°59.2°
CARCAQNAGC4117.8°120.3°
CARCAQNAGCAV121.9°119.7°
CARCAQNAGH13119.3°120.1°
CARCAQCAVH13120.1°120.0°
CARCAQNAGCAH63.5°60.0°
CARCAQCAVCAU51.2°57.7°
CAQCARH1H2117.8°120.2°
CAQCARCASH371.4°179.2°
CAQCARCASH4167.4°60.9°
CARCAQCAVH11171.9°62.3°
CARCAQCAVH1269.5°177.6°
N3C2N1H15180.0°180.0°
N3C2N1C60.5°0.0°
C2N3C4NAG179.6°180.0°
C2N3C4C50.5°0.0°
N1C2N3C40.0°0.0°
C2N1C6C50.4°0.1°
C2N1C6NAK180.0°180.0°
CASNATCAWCAU178.3°124.2°
CASNATCAUCAV18.2°61.7°
NATCASCARH172.7°179.1°
NATCASCARH2168.7°60.7°
NATCASH3H4121.7°120.1°
CASNATCAWH6180.0°60.0°
CASNATCAWH760.0°180.0°
CASNATCAWH860.0°60.0°
CASNATCAUH9101.7°178.2°
CASNATCAUH10138.0°58.3°
CAWNATCAUCAV163.5°174.2°
CAWNATCASH3122.1°54.2°
CAWNATCASH40.9°65.8°
NATCAWH6H7120.0°120.0°
NATCAWH6H8120.0°120.0°
NATCAWH7H8120.0°120.0°
CAWNATCAUH976.6°54.1°
CAWNATCAUH1043.7°65.8°
N3C4NAGC5179.1°180.0°
N3C4NAGCAQ1.2°0.1°
N3C4C5C60.6°0.0°
N3C4NAGCAH180.0°179.8°
N3C4C5CAI179.3°179.8°
C4N3C2H15180.0°180.0°
N1C6C5C40.2°0.1°
N1C6C5NAK179.6°179.9°
N1C6C5CAI178.4°179.8°
C6N1C2H15179.5°180.0°
N1C6NAKH160.0°0.0°
N1C6NAKH17120.0°179.9°
C4NAGCAQCAH178.6°179.7°
C4NAGCAQCAV120.3°120.0°
NAGC4C5C6179.8°180.0°
NAGC4C5CAI1.5°0.2°
C4NAGCAHCAI0.2°0.3°
C4NAGCAQH131.5°0.2°
C4NAGCAHH14179.8°179.8°
C5C4NAGCAQ179.7°180.0°
C4C5C6CAI178.2°179.7°
C4C5C6NAK179.5°180.0°
C5C4NAGCAH0.8°0.3°
C4C5CAICAH1.5°0.0°
C4C5CAICAJ177.3°179.9°
NAGCAQCAVH13119.2°120.2°
CAQNAGCAHCAI178.7°180.0°
NAGCAQCAVCAU172.0°177.5°
NAGCAQCARH1115.0°62.5°
NAGCAQCARH23.6°57.7°
NAGCAQCAVH1167.3°57.6°
NAGCAQCAVH1251.3°62.5°
CAQNAGCAHH141.3°0.1°
CAQCAVCAUNAT40.7°59.2°
CAVCAQNAGCAH58.3°59.6°
CAQCAVCAUH11120.7°120.0°
CAQCAVCAUH12120.7°119.9°
CAVCAQCARH1124.6°177.6°
CAVCAQCARH2116.8°62.2°
CAQCAVCAUH9160.5°179.2°
CAQCAVCAUH1079.2°60.8°
CAQCAVH11H12117.8°120.1°
NATCAUCAVH9119.8°120.1°
NATCAUCAVH10119.8°120.0°
CAUNATCASH356.2°178.3°
CAUNATCASH4177.4°58.3°
CAUNATCAWH61.7°64.2°
CAUNATCAWH7118.3°55.8°
CAUNATCAWH8121.7°175.8°
NATCAUH9H10120.5°120.0°
NATCAUCAVH11161.3°60.8°
NATCAUCAVH1280.1°179.1°
C6C5CAICAH179.9°179.8°
C6C5CAICAJ4.3°0.1°
C5C6NAKH16179.7°179.9°
C5C6NAKH1760.3°0.0°
NAKC6C5CAI1.3°0.3°
C6NAKH16H17120.0°180.0°
NAGCAHCAIC51.1°0.1°
NAGCAHCAIH14180.0°180.0°
NAGCAHCAICAJ177.3°180.0°
CAHNAGCAQH13177.2°179.9°
C5CAICAJCAP31.6°49.6°
C5CAICAHCAJ176.2°179.9°
C5CAICAJCAL153.5°130.2°
C5CAICAHH14178.9°179.9°
CAOCAPCAJH18180.0°179.9°
CAOCAPCAJCAI178.3°180.0°
CAPCAOCANH19180.0°179.9°
CAOCAPCAJCAL3.2°0.2°
CAPCAOCANOAX178.1°180.0°
CAPCAOCANCAM2.1°0.3°
CAPCAJCAICAH143.7°130.3°
CAPCAJCAICAL174.9°179.8°
CAJCAPCAOCAN0.6°0.0°
CAPCAJCALCAM2.9°0.3°
CAJCAPCAOH19179.4°180.0°
CAPCAJCALH20177.0°179.8°
CAHCAICAJCAL31.3°50.0°
CAICAJCALCAM177.9°179.9°
CAJCAICAHH142.7°0.0°
CAICAJCAPH181.7°0.1°
CAICAJCALH202.0°0.0°
CAOCANOAXCAM175.8°179.8°
CAOCANOAXCAY120.2°112.6°
CAOCANCAMCAL2.3°0.2°
CANCAOCAPH18179.4°180.0°
CAOCANCAMH21177.7°179.7°
CAJCALCAMCAN0.3°0.1°
CAJCALCAMH20180.0°179.9°
CALCAJCAPH18176.9°179.7°
CAJCALCAMH21179.7°180.0°
CAVCAUH9H10120.5°119.9°
CAUCAVH11H12117.8°120.1°
CAUCAVCAQH1368.9°62.3°
OAXCANCAMCAL178.1°180.0°
CANOAXCAYCAZ145.6°6.1°
CANOAXCAYCBD36.5°174.1°
OAXCANCAOH191.9°0.0°
OAXCANCAMH212.0°0.1°
CAMCANOAXCAY64.0°67.7°
CANCAMCALH21180.0°179.9°
CAMCANCAOH19177.9°179.8°
CANCAMCALH20179.7°180.0°
OAXCAYCAZCBD178.0°179.7°
OAXCAYCAZCBA179.0°180.0°
OAXCAYCBDCBC179.1°179.7°
OAXCAYCAZH221.0°0.1°
OAXCAYCBDH260.9°0.0°
CAYCAZCBAH22180.0°179.9°
CAZCAYCBDCBC1.1°0.6°
CAYCAZCBACBB0.6°0.0°
CAYCAZCBAH23179.4°180.0°
CAZCAYCBDH26178.8°179.7°
CBDCAYCAZCBA1.0°0.3°
CAYCBDCBCH26180.0°179.7°
CAYCBDCBCCBB0.8°0.6°
CBDCAYCAZH22179.0°179.8°
CAYCBDCBCH25179.2°179.8°
CAZCBACBBH23180.0°180.0°
CAZCBACBBCBC0.3°0.1°
CAZCBACBBH24179.7°180.0°
CBDCBCCBBCBA0.4°0.4°
CBDCBCCBBH25180.0°179.6°
CBDCBCCBBH24179.6°179.7°
CBACBBCBCH24180.0°180.0°
CBBCBACAZH22179.4°180.0°
CBACBBCBCH25179.6°180.0°
CBCCBBCBAH23179.7°180.0°
CBBCBCCBDH26179.1°179.7°
H1CARCASH3167.9°60.8°
H1CARCASH446.6°59.1°
H1CARCAQH134.6°57.6°
H2CARCASH349.3°59.3°
H2CARCASH471.9°179.2°
H2CARCAQH13123.2°177.8°
H6CAWH7H8120.0°120.0°
H9CAUCAVH1178.8°59.3°
H9CAUCAVH1239.8°60.8°
H10CAUCAVH1141.5°179.2°
H10CAUCAVH12160.1°59.1°
H11CAVCAQH1351.8°177.8°
H12CAVCAQH13170.4°57.6°
H18CAPCAOH190.6°0.1°
H20CALCAMH210.3°0.1°
H22CAZCBAH230.6°0.1°
H23CBACBBH240.3°0.0°
H24CBBCBCH250.4°0.1°
H25CBCCBDH260.8°0.1°

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon