Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VSB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CASCARsing1.53Å1.32Å
CASCATsing1.53Å1.67Å
CARCAQsing1.53Å1.66Å
C2N3doub1.32Å1.35ÅAromatic
C2N1sing1.32Å1.32ÅAromatic
N3C4sing1.33Å1.36ÅAromatic
N1C6doub1.33Å1.35ÅAromatic
CAQNAGsing1.47Å1.51Å
CAQCAVsing1.53Å1.62Å
C4NAGsing1.37Å1.38ÅAromatic
C4C5doub1.41Å1.40ÅAromatic
C6C5sing1.40Å1.43ÅAromatic
C6NAKsing1.38Å1.34Å
NAGCAHsing1.37Å1.32ÅAromatic
C5CAIsing1.47Å1.41ÅAromatic
CATNAWsing1.47Å1.47Å
CATCAUsing1.53Å1.67Å
CBBCBAsing1.53Å1.66Å
CBBNAWsing1.47Å1.56Å
CAICAHdoub1.36Å1.34ÅAromatic
CAICAJsing1.48Å1.42Å
CALCAMdoub1.38Å1.39ÅAromatic
CALCAJsing1.39Å1.39ÅAromatic
CBANAZsing1.47Å1.43Å
CAVCAUsing1.53Å1.34Å
NAWCAXsing1.47Å1.35Å
CAMCANsing1.39Å1.38ÅAromatic
CAJCAPdoub1.39Å1.40ÅAromatic
CBCNAZsing1.47Å1.42Å
NAZCAYsing1.47Å1.48Å
CAXCAYsing1.53Å1.43Å
CANOBDsing1.36Å1.37Å
CANCAOdoub1.39Å1.40ÅAromatic
CAPCAOsing1.38Å1.41ÅAromatic
OBDCBEsing1.36Å1.36Å
CBECBJdoub1.39Å1.39ÅAromatic
CBECBFsing1.39Å1.39ÅAromatic
CBJCBIsing1.38Å1.39ÅAromatic
CBFCBGdoub1.38Å1.39ÅAromatic
CBICBHdoub1.38Å1.39ÅAromatic
CBGCBHsing1.38Å1.39ÅAromatic
CAXH1sing1.09Å1.10Å
CAYH2sing1.09Å1.10Å
CAYH3sing1.09Å1.10Å
CBCH5sing1.09Å1.10Å
CBCH6sing1.09Å1.10Å
CBCH7sing1.09Å1.10Å
CBAH8sing1.09Å1.10Å
CBAH9sing1.09Å1.10Å
CBBH10sing1.09Å1.10Å
CATH11sing1.09Å1.10Å
CAUH12sing1.09Å1.10Å
CAVH13sing1.09Å1.10Å
CAVH14sing1.09Å1.10Å
CASH15sing1.09Å1.10Å
CASH16sing1.09Å1.10Å
CARH17sing1.09Å1.10Å
CARH18sing1.09Å1.10Å
CAQH19sing1.09Å1.10Å
CAHH20sing1.08Å1.08Å
C2H22sing1.08Å1.08Å
NAKH23sing0.97Å1.00Å
NAKH24sing0.97Å1.00Å
CAPH26sing1.08Å1.08Å
CAOH27sing1.08Å1.08Å
CALH28sing1.08Å1.08Å
CAMH29sing1.08Å1.08Å
CBFH30sing1.08Å1.08Å
CBGH31sing1.08Å1.08Å
CBHH32sing1.08Å1.08Å
CBIH33sing1.08Å1.08Å
CBJH34sing1.08Å1.08Å
CAXH35sing1.09Å1.10Å
CBBH4sing1.09Å1.10Å
CAUH36sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CARCASCAT100.1°109.4°
CASCARCAQ83.5°109.5°
CARCASH15111.8°109.5°
CARCASH16111.8°109.5°
CASCARH17115.5°109.5°
CASCARH18115.5°109.4°
CASCATNAW129.1°109.5°
CASCATCAU130.8°109.5°
CASCATH11105.3°109.5°
CATCASH15111.7°109.5°
CATCASH16111.7°109.5°
CARCAQNAG82.6°109.5°
CARCAQCAV125.4°109.5°
CAQCARH17115.6°109.5°
CAQCARH18115.5°109.5°
CARCAQH19106.7°109.5°
N3C2N1123.1°122.7°
C2N3C4124.2°120.7°
N3C2H22118.5°118.7°
C2N1C6117.4°121.0°
N1C2H22118.4°118.6°
N3C4NAG136.0°134.1°
N3C4C5113.7°118.5°
N1C6C5120.6°118.3°
N1C6NAK115.8°120.8°
NAGCAQCAV124.0°109.4°
CAQNAGC4121.3°124.8°
CAQNAGCAH133.1°124.9°
NAGCAQH19108.4°109.5°
CAQCAVCAU107.0°109.5°
CAQCAVH13110.1°109.5°
CAQCAVH14110.0°109.5°
CAVCAQH19107.1°109.4°
NAGC4C5110.1°107.4°
C4NAGCAH104.5°110.3°
C4C5C6121.0°118.7°
C4C5CAI103.8°106.2°
C5C6NAK123.5°120.9°
C6C5CAI135.2°135.1°
C6NAKH23109.5°120.0°
C6NAKH24109.4°119.9°
NAGCAHCAI112.7°109.6°
NAGCAHH20123.7°125.2°
C5CAICAH106.5°106.5°
C5CAICAJ128.2°126.7°
NAWCATCAU74.9°109.4°
CATNAWCBB118.3°111.0°
CATNAWCAX161.2°111.0°
NAWCATH11107.4°109.5°
CATCAUCAV78.8°109.4°
CAUCATH11105.3°109.5°
CATCAUH12116.5°109.5°
CATCAUH36116.5°109.4°
CBACBBNAW146.8°109.4°
CBBCBANAZ78.1°109.4°
CBBCBAH8116.6°109.5°
CBBCBAH9116.7°109.4°
CBACBBH1099.5°109.5°
CBACBBH499.5°109.5°
CBBNAWCAX72.5°110.9°
NAWCBBH1099.5°109.5°
NAWCBBH499.5°109.5°
CAHCAICAJ123.0°126.7°
CAICAHH20123.7°125.2°
CAICAJCAL120.9°120.1°
CAICAJCAP122.6°120.0°
CAMCALCAJ123.1°119.9°
CALCAMCAN120.6°120.0°
CAMCALH28118.5°120.0°
CALCAMH29119.7°120.0°
CALCAJCAP115.2°119.9°
CAJCALH28118.5°120.1°
CBANAZCBC115.2°111.0°
CBANAZCAY122.9°110.9°
NAZCBAH8116.6°109.5°
NAZCBAH9116.7°109.6°
CAVCAUH12116.5°109.5°
CAUCAVH13110.1°109.5°
CAUCAVH14110.1°109.5°
CAVCAUH36116.5°109.5°
NAWCAXCAY145.4°109.3°
NAWCAXH199.9°109.5°
NAWCAXH3599.9°109.5°
CAMCANOBD115.7°119.9°
CAMCANCAO117.4°120.1°
CANCAMH29119.7°120.0°
CAJCAPCAO121.5°119.9°
CAJCAPH26119.2°120.1°
CBCNAZCAY121.0°111.0°
NAZCBCH5109.5°109.5°
NAZCBCH6109.5°109.5°
NAZCBCH7109.5°109.5°
NAZCAYCAX94.3°109.4°
NAZCAYH2113.1°109.5°
NAZCAYH3113.1°109.5°
CAYCAXH199.9°109.5°
CAXCAYH2113.1°109.5°
CAXCAYH3113.1°109.5°
CAYCAXH3599.9°109.4°
OBDCANCAO126.8°119.9°
CANOBDCBE125.9°118.0°
CANCAOCAP120.8°120.1°
CANCAOH27119.6°119.9°
CAOCAPH26119.3°120.0°
CAPCAOH27119.6°120.0°
OBDCBECBJ120.5°120.1°
OBDCBECBF119.3°120.1°
CBJCBECBF120.0°119.8°
CBECBJCBI119.9°120.0°
CBECBJH34120.1°120.0°
CBECBFCBG120.0°120.0°
CBECBFH30120.0°120.0°
CBJCBICBH119.9°120.1°
CBJCBIH33120.0°120.0°
CBICBJH34120.0°120.1°
CBFCBGCBH120.1°120.0°
CBGCBFH30120.0°120.0°
CBFCBGH31119.9°120.0°
CBICBHCBG120.0°120.1°
CBICBHH32120.0°119.9°
CBHCBIH33120.1°120.0°
CBHCBGH31119.9°120.0°
CBGCBHH32120.0°119.9°
H1CAXH35109.5°109.6°
H2CAYH3109.4°109.4°
H5CBCH6109.4°109.5°
H5CBCH7109.5°109.5°
H6CBCH7109.5°109.5°
H8CBAH9109.5°109.4°
H10CBBH4109.5°109.4°
H12CAUH36109.4°109.6°
H13CAVH14109.5°109.5°
H15CASH16109.5°109.5°
H17CARH18109.5°109.4°
H23NAKH24109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CARCASCATH15118.5°120.0°
CARCASCATH16118.5°120.0°
CASCARCAQH17115.2°120.0°
CASCARCAQH18115.2°120.0°
CASCARCAQNAG178.8°60.0°
CASCARCAQCAV51.9°60.0°
CARCASCATNAW62.2°180.0°
CARCASCATCAU42.7°60.0°
CARCASCATH11169.3°60.0°
CARCASH15H16124.4°120.0°
CASCARH17H18132.4°119.9°
CASCARCAQH1974.2°180.0°
CATCASCARCAQ65.3°60.0°
CASCATNAWCAU130.7°120.0°
CASCATNAWH11127.6°120.0°
CASCATCAUH11126.7°120.0°
CASCATNAWCBB47.5°60.0°
CASCATCAUCAV47.5°60.0°
CASCATNAWCAX169.2°176.2°
CASCATCAUH1266.7°59.9°
CATCASH15H16124.3°120.0°
CATCASCARH17179.5°60.0°
CATCASCARH1849.9°179.9°
CASCATCAUH36161.7°180.0°
CARCAQNAGCAV128.1°120.0°
CARCAQNAGH19105.2°120.0°
CARCAQCAVH19126.0°120.0°
CARCAQNAGC4129.1°120.3°
CARCAQNAGCAH65.3°60.0°
CARCAQCAVCAU43.4°60.0°
CARCAQCAVH1376.2°180.0°
CARCAQCAVH14163.0°60.0°
CAQCARCASH15176.3°180.0°
CAQCARCASH1653.2°60.0°
CAQCARH17H18132.5°120.0°
N3C2N1H22180.0°179.9°
N3C2N1C60.3°0.1°
C2N3C4NAG175.9°180.0°
C2N3C4C51.5°0.0°
N1C2N3C40.7°0.1°
C2N1C6C50.3°0.0°
C2N1C6NAK179.8°180.0°
N3C4NAGCAQ7.3°0.0°
N3C4NAGC5174.6°180.0°
N3C4C5C61.4°0.1°
N3C4NAGCAH176.4°179.8°
N3C4C5CAI175.6°179.8°
C4N3C2H22179.4°180.0°
N1C6C5C40.6°0.1°
N1C6C5NAK179.4°180.0°
N1C6C5CAI175.3°179.8°
C6N1C2H22179.7°180.0°
N1C6NAKH230.0°0.1°
N1C6NAKH24120.0°180.0°
NAGCAQCAVH19127.2°120.0°
CAQNAGC4CAH169.2°179.8°
CAQNAGC4C5178.1°179.9°
CAQNAGCAHCAI177.0°180.0°
NAGCAQCAVCAU63.4°60.0°
NAGCAQCAVH13176.9°60.0°
NAGCAQCAVH1456.2°180.0°
NAGCAQCARH1766.1°180.0°
NAGCAQCARH1863.6°60.0°
CAQNAGCAHH203.0°0.1°
CAVCAQNAGC4102.8°119.7°
CAVCAQNAGCAH62.8°60.1°
CAQCAVCAUCAT65.2°60.0°
CAQCAVCAUH13119.7°120.0°
CAQCAVCAUH14119.6°120.0°
CAQCAVCAUH1249.0°60.0°
CAQCAVH13H14121.1°120.0°
CAVCAQCARH17167.1°60.0°
CAVCAQCARH1863.3°180.0°
CAQCAVCAUH36179.4°179.9°
NAGC4C5C6177.3°180.0°
NAGC4C5CAI0.3°0.2°
C4NAGCAHCAI15.7°0.2°
C4NAGCAQH1923.9°0.2°
C4NAGCAHH20164.3°179.7°
C4C5C6CAI175.9°179.7°
C4C5C6NAK178.8°179.9°
C5C4NAGCAH9.0°0.3°
C4C5CAICAH9.4°0.1°
C4C5CAICAJ172.2°180.0°
C6C5CAICAH174.2°179.8°
C6C5CAICAJ11.4°0.3°
C5C6NAKH23179.5°179.9°
C5C6NAKH2460.5°0.0°
NAKC6C5CAI5.3°0.2°
C6NAKH23H24120.0°179.9°
NAGCAHCAIC516.3°0.1°
NAGCAHCAIH20180.0°179.9°
NAGCAHCAICAJ179.8°179.8°
CAHNAGCAQH19170.5°180.0°
C5CAICAHCAJ163.9°179.9°
C5CAICAJCAL49.6°50.3°
C5CAICAJCAP116.8°130.0°
C5CAICAHH20163.7°179.8°
NAWCATCAUH11104.4°120.0°
CATNAWCBBCBA177.1°176.8°
CATNAWCBBCAX163.2°123.9°
NAWCATCAUCAV176.5°180.0°
CATNAWCAXCAY61.5°176.8°
CATNAWCAXH162.6°56.9°
CATNAWCBBH1053.0°63.2°
NAWCATCAUH1262.3°60.0°
NAWCATCASH1556.2°60.0°
NAWCATCASH16179.3°60.0°
CATNAWCAXH35174.5°63.3°
CATNAWCBBH458.8°56.8°
NAWCATCAUH3669.3°60.1°
CAUCATNAWCBB178.3°180.0°
CATCAUCAVH12114.2°120.0°
CATCAUCAVH36114.2°119.9°
CAUCATNAWCAX60.1°56.2°
CATCAUH12H36134.8°120.0°
CATCAUCAVH1354.5°180.0°
CATCAUCAVH14175.3°60.0°
CAUCATCASH15161.1°180.0°
CAUCATCASH1675.8°60.0°
CBACBBNAWH10124.1°120.0°
CBACBBNAWH4124.1°120.1°
CBBCBANAZH8114.0°120.0°
CBBCBANAZH9114.0°120.0°
CBACBBNAWCAX13.9°59.3°
CBBCBANAZCBC102.1°64.6°
CBBCBANAZCAY66.8°59.3°
CBBCBAH8H9135.2°120.0°
CBACBBH10H4103.7°120.0°
NAWCBBCBANAZ61.4°58.4°
CBBNAWCAXCAY66.7°59.3°
CBBNAWCAXH1169.2°179.2°
NAWCBBCBAH852.6°178.4°
NAWCBBCBAH9175.4°61.6°
NAWCBBH10H4103.7°120.0°
CBBNAWCATH1180.1°60.0°
CBBNAWCAXH3557.3°60.6°
CAHCAICAJCAL150.1°129.8°
CAHCAICAJCAP43.4°50.0°
CAICAJCALCAM178.2°180.0°
CAICAJCALCAP167.4°179.8°
CAICAJCAPCAO176.6°180.0°
CAJCAICAHH200.3°0.2°
CAICAJCAPH263.4°0.0°
CAICAJCALH281.8°0.0°
CAMCALCAJH28180.0°180.0°
CALCAMCANH29180.0°180.0°
CAMCALCAJCAP14.4°0.3°
CALCAMCANOBD176.3°180.0°
CALCAMCANCAO2.5°0.2°
CAJCALCAMCAN11.4°0.0°
CALCAJCAPCAO9.4°0.2°
CALCAJCAPH26170.6°179.7°
CAJCALCAMH29168.6°180.0°
CBANAZCBCCAY169.2°123.8°
CBANAZCAYCAX45.7°59.3°
CBANAZCAYH271.8°179.3°
CBANAZCAYH3163.1°60.7°
CBANAZCBCH5180.0°176.2°
CBANAZCBCH660.0°56.2°
CBANAZCBCH760.0°63.8°
NAZCBAH8H9135.2°120.1°
NAZCBACBBH1062.7°61.6°
NAZCBACBBH4174.5°178.4°
CAVCAUCATH1179.1°60.0°
CAVCAUH12H36134.8°120.0°
CAUCAVH13H14121.1°120.0°
CAUCAVCAQH19169.3°180.0°
NAWCAXCAYNAZ59.2°58.4°
NAWCAXCAYH1124.0°119.9°
NAWCAXCAYH35124.0°120.0°
NAWCAXH1H35104.3°120.1°
NAWCAXCAYH2176.6°178.4°
NAWCAXCAYH358.3°61.6°
CAXNAWCBBH10110.3°60.7°
CAXNAWCATH1141.5°63.8°
CAXNAWCBBH4138.0°179.3°
CAMCANOBDCAO178.6°179.7°
CAMCANCAOCAP2.1°0.2°
CAMCANOBDCBE136.0°75.6°
CAMCANCAOH27177.9°179.7°
CANCAMCALH28168.6°180.0°
CAJCAPCAOCAN1.6°0.0°
CAJCAPCAOH26180.0°180.0°
CAJCAPCAOH27178.4°180.0°
CAPCAJCALH28165.6°179.8°
CBCNAZCAYCAX122.7°64.6°
CBCNAZCAYH2119.9°55.5°
CBCNAZCAYH35.3°175.4°
NAZCBCH5H6120.0°120.0°
NAZCBCH5H7120.0°120.0°
NAZCBCH6H7120.0°120.0°
CBCNAZCBAH8143.9°55.4°
CBCNAZCBAH911.9°175.5°
NAZCAYCAXH2117.4°120.0°
NAZCAYCAXH3117.4°120.0°
NAZCAYCAXH1176.8°178.3°
NAZCAYH2H3127.1°120.0°
CAYNAZCBCH510.9°60.0°
CAYNAZCBCH6130.8°180.0°
CAYNAZCBCH7109.2°60.0°
CAYNAZCBAH847.1°179.3°
CAYNAZCBAH9179.1°60.7°
NAZCAYCAXH3564.9°61.6°
CAYCAXH1H35104.2°120.0°
CAXCAYH2H3127.1°120.1°
OBDCANCAOCAP179.3°180.0°
CANOBDCBECBJ145.9°5.6°
CANOBDCBECBF39.4°174.2°
OBDCANCAOH270.7°0.0°
OBDCANCAMH293.7°0.0°
CANCAOCAPH27180.0°180.0°
CAOCANOBDCBE42.6°104.6°
CANCAOCAPH26178.4°180.0°
CAOCANCAMH29177.5°179.7°
OBDCBECBJCBF174.7°179.8°
OBDCBECBJCBI178.0°179.7°
OBDCBECBFCBG177.8°180.0°
OBDCBECBFH302.2°0.0°
OBDCBECBJH342.0°0.0°
CBECBJCBIH34180.0°179.7°
CBJCBECBFCBG3.0°0.3°
CBECBJCBICBH1.9°0.6°
CBJCBECBFH30176.9°179.8°
CBECBJCBIH33178.1°179.8°
CBFCBECBJCBI3.3°0.6°
CBECBFCBGH30180.0°180.0°
CBECBFCBGCBH1.4°0.0°
CBECBFCBGH31178.6°180.0°
CBFCBECBJH34176.7°179.7°
CBJCBICBHH33180.0°179.7°
CBJCBICBHCBG0.3°0.3°
CBJCBICBHH32179.7°179.7°
CBFCBGCBHCBI0.0°0.0°
CBFCBGCBHH31180.0°180.0°
CBFCBGCBHH32180.0°180.0°
CBICBHCBGH32180.0°180.0°
CBICBHCBGH31180.0°180.0°
CBHCBICBJH34178.1°179.7°
CBHCBGCBFH30178.6°180.0°
CBGCBHCBIH33179.7°180.0°
H1CAXCAYH259.4°61.7°
H1CAXCAYH365.8°58.3°
H2CAYCAXH3552.6°58.4°
H3CAYCAXH35177.7°178.4°
H5CBCH6H7120.0°120.0°
H8CBACBBH10176.7°58.4°
H8CBACBBH471.5°61.6°
H9CBACBBH1051.3°178.4°
H9CBACBBH460.5°58.4°
H11CATCAUH12166.7°180.0°
H11CATCASH1572.2°60.0°
H11CATCASH1650.8°NaN°
H11CATCAUH3635.1°60.0°
H12CAUCAVH13168.7°60.1°
H12CAUCAVH1470.6°179.9°
H13CAVCAQH1949.7°60.0°
H13CAVCAUH3659.7°60.0°
H14CAVCAQH1971.1°60.0°
H14CAVCAUH3661.1°60.0°
H15CASCARH1761.0°60.0°
H15CASCARH1868.5°60.0°
H16CASCARH1762.1°180.0°
H16CASCARH18168.4°60.1°
H17CARCAQH1941.0°60.0°
H18CARCAQH19170.6°60.0°
H26CAPCAOH271.6°0.0°
H28CALCAMH2911.4°0.0°
H30CBFCBGH311.4°0.0°
H31CBGCBHH320.0°0.0°
H32CBHCBIH330.3°0.0°
H33CBICBJH341.9°0.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon