Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

VSA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAPCBDsing1.54Å1.52Å
CAPCANsing1.54Å1.52Å
C2N3doub1.32Å1.34ÅAromatic
C2N1sing1.32Å1.34ÅAromatic
N3C4sing1.33Å1.35ÅAromatic
CBDNBEsing1.47Å1.48Å
CBDCAQsing1.54Å1.53Å
N1C6doub1.33Å1.35ÅAromatic
C4NBEsing1.37Å1.34ÅAromatic
C4C5doub1.40Å1.39ÅAromatic
CANCAOsing1.55Å1.52Å
NBECAMsing1.37Å1.33ÅAromatic
C6C5sing1.40Å1.39ÅAromatic
C6NAAsing1.38Å1.35Å
C5CBAsing1.47Å1.39ÅAromatic
CAMCBAdoub1.36Å1.38ÅAromatic
CAQCAOsing1.55Å1.52Å
CBACAYsing1.48Å1.49Å
CAKCAYdoub1.39Å1.39ÅAromatic
CAKCAIsing1.38Å1.40ÅAromatic
CAYCAJsing1.39Å1.38ÅAromatic
CAICAXdoub1.39Å1.39ÅAromatic
CAJCAHdoub1.38Å1.38ÅAromatic
CAXCAHsing1.39Å1.39ÅAromatic
CAXNAUsing1.40Å1.40Å
OABCAVdoub1.22Å1.22Å
CAVNAUsing1.35Å1.33Å
CAVNATsing1.35Å1.33Å
NATCAWsing1.40Å1.40Å
CAWCAFdoub1.39Å1.39ÅAromatic
CAWCAGsing1.39Å1.39ÅAromatic
CAFCADsing1.38Å1.39ÅAromatic
CAGCAEdoub1.38Å1.39ÅAromatic
CADCACdoub1.38Å1.39ÅAromatic
CAECACsing1.38Å1.39ÅAromatic
CAPH1sing1.09Å1.10Å
CAPH2sing1.09Å1.10Å
CANH3sing1.09Å1.10Å
CANH4sing1.09Å1.10Å
CAOH5sing1.09Å1.10Å
CAOH6sing1.09Å1.10Å
CAQH7sing1.09Å1.10Å
CAQH8sing1.09Å1.10Å
CBDH9sing1.09Å1.10Å
CAMH10sing1.08Å1.08Å
C2H11sing1.08Å1.08Å
NAAH12sing0.97Å1.00Å
NAAH13sing0.97Å1.00Å
CAKH14sing1.08Å1.08Å
CAIH15sing1.08Å1.08Å
CAJH16sing1.08Å1.08Å
CAHH17sing1.08Å1.08Å
NAUH18sing0.97Å1.00Å
NATH19sing0.97Å1.00Å
CAFH20sing1.08Å1.08Å
CADH21sing1.08Å1.08Å
CACH22sing1.08Å1.08Å
CAEH23sing1.08Å1.08Å
CAGH24sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CBDCAPCAN108.4°106.6°
CAPCBDNBE108.2°110.0°
CAPCBDCAQ106.4°106.6°
CBDCAPH1109.7°110.1°
CBDCAPH2109.7°110.1°
CAPCBDH9110.8°110.0°
CAPCANCAO107.6°104.2°
CANCAPH1109.7°110.0°
CANCAPH2109.7°110.0°
CAPCANH3110.0°110.5°
CAPCANH4110.0°110.5°
N3C2N1121.4°122.7°
C2N3C4120.1°120.7°
N3C2H11119.3°118.7°
C2N1C6120.8°121.0°
N1C2H11119.3°118.6°
N3C4NBE131.6°134.1°
N3C4C5119.7°118.5°
NBECBDCAQ108.9°110.0°
CBDNBEC4127.1°124.9°
CBDNBECAM123.8°124.8°
NBECBDH9111.5°110.0°
CBDCAQCAO108.0°104.2°
CBDCAQH7109.8°110.5°
CBDCAQH8109.8°110.6°
CAQCBDH9110.8°110.1°
N1C6C5119.3°118.3°
N1C6NAA119.8°120.8°
NBEC4C5108.7°107.4°
C4NBECAM109.1°110.3°
C4C5C6118.7°118.8°
C4C5CBA106.4°106.2°
CANCAOCAQ106.8°102.7°
CAOCANH3110.0°110.4°
CAOCANH4109.9°110.5°
CANCAOH5110.1°110.7°
CANCAOH6110.1°110.7°
NBECAMCBA109.4°109.6°
NBECAMH10125.4°125.2°
C5C6NAA121.0°120.8°
C6C5CBA134.9°135.0°
C6NAAH12109.5°120.0°
C6NAAH13109.4°120.0°
C5CBACAM106.5°106.5°
C5CBACAY132.3°126.8°
CAMCBACAY121.2°126.7°
CBACAMH10125.3°125.2°
CAQCAOH5110.2°110.8°
CAQCAOH6110.1°110.9°
CAOCAQH7109.8°110.5°
CAOCAQH8109.8°110.4°
CBACAYCAK123.8°120.1°
CBACAYCAJ116.4°120.1°
CAYCAKCAI120.0°120.0°
CAKCAYCAJ119.8°119.9°
CAYCAKH14120.0°120.1°
CAKCAICAX119.8°120.1°
CAICAKH14120.0°120.0°
CAKCAIH15120.1°120.0°
CAYCAJCAH120.2°120.0°
CAYCAJH16119.9°120.0°
CAICAXCAH119.6°120.1°
CAICAXNAU125.0°120.0°
CAXCAIH15120.1°119.9°
CAJCAHCAX120.6°120.1°
CAHCAJH16119.9°120.0°
CAJCAHH17119.7°120.0°
CAHCAXNAU115.4°119.9°
CAXCAHH17119.7°119.9°
CAXNAUCAV130.8°120.0°
CAXNAUH18114.6°120.0°
OABCAVNAU123.9°120.0°
OABCAVNAT123.2°120.0°
NAUCAVNAT112.9°120.0°
CAVNAUH18114.6°120.0°
CAVNATCAW127.2°120.0°
CAVNATH19116.4°119.9°
NATCAWCAF122.2°120.1°
NATCAWCAG118.0°120.1°
CAWNATH19116.4°120.1°
CAFCAWCAG119.7°119.8°
CAWCAFCAD120.0°119.9°
CAWCAFH20120.0°120.1°
CAWCAGCAE120.4°119.9°
CAWCAGH24119.8°120.0°
CAFCADCAC120.2°120.1°
CADCAFH20120.0°120.0°
CAFCADH21119.9°120.0°
CAGCAECAC119.8°120.1°
CAGCAEH23120.1°119.9°
CAECAGH24119.8°120.1°
CADCACCAE119.8°120.1°
CACCADH21119.9°120.0°
CADCACH22120.0°119.9°
CAECACH22120.1°119.9°
CACCAEH23120.1°120.0°
H1CAPH2109.4°110.1°
H3CANH4109.4°110.6°
H5CAOH6109.5°110.8°
H7CAQH8109.5°110.5°
H12NAAH13109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CBDCAPCANH1119.9°119.3°
CBDCAPCANH2119.9°119.3°
CAPCBDNBECAQ115.3°117.2°
CAPCBDNBEH9122.2°121.4°
CAPCBDCAQH9120.6°119.3°
CAPCBDNBEC4141.7°120.3°
CBDCAPCANCAO2.1°23.6°
CAPCBDNBECAM37.4°60.0°
CAPCBDCAQCAO15.6°23.6°
CBDCAPH1H2120.5°121.5°
CBDCAPCANH3117.6°95.0°
CBDCAPCANH4121.8°142.3°
CAPCBDCAQH7135.4°95.0°
CAPCBDCAQH8104.1°142.3°
CANCAPCBDNBE125.2°119.3°
CANCAPCBDCAQ8.3°0.0°
CAPCANCAOH3119.7°118.7°
CAPCANCAOH4119.7°118.7°
CAPCANCAOCAQ11.7°37.9°
CANCAPH1H2120.5°121.3°
CAPCANH3H4120.9°122.7°
CAPCANCAOH5131.3°156.2°
CAPCANCAOH6107.9°80.5°
CANCAPCBDH9112.3°119.4°
N3C2N1H11180.0°180.0°
N3C2N1C60.1°0.0°
C2N3C4NBE179.2°180.0°
C2N3C4C50.2°0.1°
N1C2N3C40.1°0.1°
C2N1C6C50.3°0.0°
C2N1C6NAA180.0°180.0°
N3C4NBECBD0.9°0.1°
N3C4NBEC5179.1°179.9°
N3C4NBECAM179.8°179.8°
N3C4C5C60.0°0.1°
N3C4C5CBA179.4°179.9°
C4N3C2H11179.9°180.0°
NBECBDCAQH9123.0°121.4°
CBDNBEC4CAM179.2°179.7°
CBDNBEC4C5180.0°180.0°
CBDNBECAMCBA179.7°180.0°
NBECBDCAQCAO132.1°142.9°
NBECBDCAPH15.3°121.4°
NBECBDCAPH2115.0°0.1°
NBECBDCAQH7108.2°24.3°
NBECBDCAQH812.3°98.4°
CBDNBECAMH100.3°0.0°
CAQCBDNBEC4103.0°122.5°
CBDCAQCAOCAN17.0°37.9°
CAQCBDNBECAM77.9°57.2°
CBDCAQCAOH7119.7°118.7°
CBDCAQCAOH8119.8°118.8°
CAQCBDCAPH1111.6°119.3°
CAQCBDCAPH2128.2°119.2°
CBDCAQCAOH5136.6°156.2°
CBDCAQCAOH6102.6°80.4°
CBDCAQH7H8120.7°122.7°
N1C6C5C40.2°0.1°
N1C6C5NAA179.8°180.0°
N1C6C5CBA179.4°179.8°
C6N1C2H11179.9°180.0°
N1C6NAAH120.0°0.0°
N1C6NAAH13120.0°180.0°
NBEC4C5C6179.2°180.0°
NBEC4C5CBA0.1°0.2°
C4NBECAMCBA1.0°0.3°
C4NBECBDH919.6°1.1°
C4NBECAMH10179.0°179.8°
C5C4NBECAM0.7°0.3°
C4C5C6CBA179.2°179.7°
C4C5C6NAA180.0°180.0°
C4C5CBACAM0.4°0.1°
C4C5CBACAY178.8°179.8°
CANCAOCAQH5119.6°118.3°
CANCAOCAQH6119.6°118.3°
CAOCANCAPH1122.0°95.7°
CAOCANCAPH2117.8°142.9°
CAOCANH3H4120.9°122.6°
CANCAOH5H6121.2°123.2°
CANCAOCAQH7136.7°80.8°
CANCAOCAQH8102.8°156.7°
NBECAMCBAC50.9°0.1°
NBECAMCBAH10180.0°180.0°
NBECAMCBACAY179.5°180.0°
CAMNBECBDH9159.6°178.6°
C6C5CBACAM179.7°179.8°
C6C5CBACAY1.9°0.1°
C5C6NAAH12179.7°180.0°
C5C6NAAH1359.7°0.0°
NAAC6C5CBA0.9°0.3°
C6NAAH12H13120.0°180.0°
C5CBACAMCAY178.6°179.9°
C5CBACAYCAK50.2°49.5°
C5CBACAYCAJ133.8°130.1°
C5CBACAMH10179.1°179.9°
CAMCBACAYCAK128.0°130.3°
CAMCBACAYCAJ48.0°50.0°
CAQCAOCANH3108.0°80.7°
CAQCAOCANH4131.4°156.7°
CAQCAOH5H6121.2°123.5°
CAOCAQH7H8120.7°122.5°
CAOCAQCBDH9105.0°95.7°
CBACAYCAKCAJ175.9°179.7°
CBACAYCAKCAI178.1°180.0°
CBACAYCAJCAH178.6°180.0°
CAYCBACAMH100.5°0.0°
CBACAYCAKH141.9°0.1°
CBACAYCAJH161.4°0.1°
CAYCAKCAIH14180.0°179.9°
CAYCAKCAICAX0.4°0.0°
CAKCAYCAJCAH2.4°0.3°
CAYCAKCAIH15179.5°179.9°
CAKCAYCAJH16177.6°179.7°
CAICAKCAYCAJ2.2°0.3°
CAKCAICAXH15180.0°180.0°
CAKCAICAXCAH1.2°0.2°
CAKCAICAXNAU178.9°180.0°
CAYCAJCAHH16180.0°179.9°
CAYCAJCAHCAX0.8°0.1°
CAJCAYCAKH14177.8°179.8°
CAYCAJCAHH17179.2°180.0°
CAICAXCAHCAJ1.0°0.2°
CAICAXCAHNAU177.9°179.8°
CAICAXNAUCAV11.4°146.9°
CAXCAICAKH14179.6°180.0°
CAICAXCAHH17179.0°179.7°
CAICAXNAUH18168.6°33.1°
CAJCAHCAXH17180.0°179.9°
CAJCAHCAXNAU178.9°180.0°
CAHCAXNAUCAV170.8°33.3°
CAHCAXCAIH15178.9°179.8°
CAXCAHCAJH16179.2°180.0°
CAHCAXNAUH189.2°146.7°
CAXNAUCAVOAB1.3°5.2°
CAXNAUCAVH18180.0°180.0°
CAXNAUCAVNAT178.8°174.8°
NAUCAXCAIH151.2°0.0°
NAUCAXCAHH171.1°0.1°
OABCAVNAUNAT180.0°180.0°
OABCAVNATCAW0.4°5.2°
OABCAVNAUH18178.8°174.8°
OABCAVNATH19179.6°174.8°
NAUCAVNATCAW179.5°174.9°
NAUCAVNATH190.4°5.2°
CAVNATCAWH19180.0°180.0°
CAVNATCAWCAF46.7°33.1°
CAVNATCAWCAG135.6°147.2°
NATCAVNAUH181.2°5.2°
NATCAWCAFCAG177.7°179.7°
NATCAWCAFCAD179.0°180.0°
NATCAWCAGCAE179.2°179.8°
NATCAWCAFH201.1°0.0°
NATCAWCAGH240.8°0.1°
CAWCAFCADH20180.0°180.0°
CAFCAWCAGCAE1.4°0.5°
CAWCAFCADCAC0.6°0.0°
CAFCAWNATH19133.3°147.0°
CAWCAFCADH21179.4°179.9°
CAFCAWCAGH24178.6°179.7°
CAGCAWCAFCAD1.3°0.2°
CAWCAGCAEH24180.0°179.8°
CAWCAGCAECAC0.8°0.5°
CAGCAWNATH1944.4°32.8°
CAGCAWCAFH20178.7°179.7°
CAWCAGCAEH23179.2°179.7°
CAFCADCACH21180.0°179.9°
CAFCADCACCAE0.0°0.0°
CAFCADCACH22180.0°179.9°
CAGCAECACCAD0.1°0.3°
CAGCAECACH23180.0°179.8°
CAGCAECACH22179.9°179.8°
CADCACCAEH22180.0°179.9°
CACCADCAFH20179.4°180.0°
CADCACCAEH23179.9°179.9°
CAECACCADH21180.0°180.0°
CACCAECAGH24179.2°179.7°
H1CAPCANH32.2°145.7°
H1CAPCANH4118.3°23.0°
H1CAPCBDH9127.9°0.1°
H2CAPCANH3122.5°24.3°
H2CAPCANH42.0°98.4°
H2CAPCBDH97.6°121.4°
H3CANCAOH511.6°37.5°
H3CANCAOH6132.4°160.8°
H4CANCAOH5109.0°85.1°
H4CANCAOH611.8°38.2°
H5CAOCAQH7103.7°37.5°
H5CAOCAQH816.8°85.0°
H6CAOCAQH717.2°160.9°
H6CAOCAQH8137.7°38.4°
H7CAQCBDH914.8°145.6°
H8CAQCBDH9135.3°22.9°
H14CAKCAIH150.5°0.0°
H16CAJCAHH170.8°0.1°
H20CAFCADH210.6°0.0°
H21CADCACH220.0°0.1°
H22CACCAEH230.1°0.0°
H23CAECAGH240.8°0.1°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon