VRT
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | O | doub | 1.21Å | 1.24Å | |
| C | CA | sing | 1.51Å | 1.54Å | |
| C | N10 | sing | 1.35Å | 1.34Å | |
| N | CA | sing | 1.47Å | 1.51Å | |
| N1 | C2 | doub | 1.32Å | 1.37Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.38Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.38Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.41Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.41Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.38Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.52Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.34Å | |
| N7 | C8 | doub | 1.30Å | 1.35Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C1' | sing | 1.47Å | 1.52Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CB | CG | sing | 1.53Å | 1.54Å | |
| CD | CG | sing | 1.53Å | 1.52Å | |
| C1' | C2' | sing | 1.55Å | 1.57Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| N10 | C2' | sing | 1.47Å | 1.47Å | |
| C2' | C3' | sing | 1.55Å | 1.57Å | |
| C3' | O3' | sing | 1.43Å | 1.48Å | |
| C3' | C4' | sing | 1.54Å | 1.55Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| N | HN | sing | 1.01Å | 1.00Å | |
| N | HNA | sing | 1.01Å | 1.00Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CD | HD | sing | 1.09Å | 1.10Å | |
| CD | HDA | sing | 1.09Å | 1.10Å | |
| CD | HDB | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N10 | HN10 | sing | 0.97Å | 1.00Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 121.3° | 120.0° |
| O | C | N10 | 125.6° | 120.0° |
| CA | C | N10 | 112.9° | 120.0° |
| C | CA | N | 123.9° | 109.5° |
| C | CA | CB | 118.0° | 109.4° |
| C | CA | HA | 92.5° | 109.5° |
| C | N10 | C2' | 131.5° | 120.0° |
| C | N10 | HN10 | 114.3° | 120.0° |
| N | CA | CB | 117.6° | 109.5° |
| CA | N | HN | 109.5° | 111.0° |
| CA | N | HNA | 109.5° | 111.1° |
| N | CA | HA | 92.6° | 109.5° |
| C2 | N1 | C6 | 118.2° | 121.2° |
| N1 | C2 | N3 | 122.0° | 122.4° |
| N1 | C2 | H2 | 119.0° | 118.8° |
| N1 | C6 | C5 | 122.0° | 118.5° |
| N1 | C6 | N6 | 123.2° | 120.8° |
| C2 | N3 | C4 | 123.4° | 120.7° |
| N3 | C2 | H2 | 119.0° | 118.8° |
| N3 | C4 | C5 | 118.1° | 119.1° |
| N3 | C4 | N9 | 136.4° | 134.9° |
| C5 | C4 | N9 | 105.5° | 106.0° |
| C4 | C5 | C6 | 116.3° | 118.2° |
| C4 | C5 | N7 | 109.4° | 107.1° |
| C4 | N9 | C8 | 108.7° | 107.5° |
| C4 | N9 | C1' | 124.3° | 126.3° |
| C6 | C5 | N7 | 134.4° | 134.7° |
| C5 | C6 | N6 | 114.8° | 120.8° |
| C5 | N7 | C8 | 106.2° | 109.4° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.5° | 120.0° |
| N7 | C8 | N9 | 110.3° | 109.9° |
| N7 | C8 | H8 | 124.9° | 125.0° |
| C8 | N9 | C1' | 127.0° | 126.2° |
| N9 | C8 | H8 | 124.9° | 125.0° |
| N9 | C1' | C2' | 116.0° | 110.6° |
| N9 | C1' | O4' | 114.8° | 110.6° |
| N9 | C1' | H1' | 105.9° | 110.5° |
| CA | CB | CG | 110.2° | 109.4° |
| CB | CA | HA | 92.5° | 109.5° |
| CA | CB | HB | 109.3° | 109.5° |
| CA | CB | HBA | 109.3° | 109.4° |
| CB | CG | CD | 114.0° | 109.4° |
| CG | CB | HB | 109.3° | 109.4° |
| CG | CB | HBA | 109.3° | 109.5° |
| CB | CG | HG | 108.3° | 109.4° |
| CB | CG | HGA | 108.3° | 109.5° |
| CG | CD | HD | 109.5° | 109.5° |
| CG | CD | HDA | 109.5° | 109.5° |
| CG | CD | HDB | 109.5° | 109.4° |
| CD | CG | HG | 108.4° | 109.5° |
| CD | CG | HGA | 108.4° | 109.5° |
| C2' | C1' | O4' | 107.1° | 103.5° |
| C1' | C2' | N10 | 107.2° | 110.9° |
| C1' | C2' | C3' | 106.2° | 102.1° |
| C2' | C1' | H1' | 105.4° | 110.6° |
| C1' | C2' | H2' | 110.4° | 110.9° |
| C1' | O4' | C4' | 111.9° | 107.0° |
| O4' | C1' | H1' | 106.8° | 110.8° |
| N10 | C2' | C3' | 110.5° | 110.9° |
| C2' | N10 | HN10 | 114.3° | 120.0° |
| N10 | C2' | H2' | 111.9° | 110.8° |
| C2' | C3' | O3' | 117.3° | 110.5° |
| C2' | C3' | C4' | 104.1° | 104.2° |
| C3' | C2' | H2' | 110.5° | 110.9° |
| C2' | C3' | H3' | 107.0° | 110.5° |
| O3' | C3' | C4' | 112.7° | 110.5° |
| O3' | C3' | H3' | 108.0° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | O4' | 109.7° | 107.3° |
| C3' | C4' | C5' | 121.5° | 109.8° |
| C4' | C3' | H3' | 107.1° | 110.7° |
| C3' | C4' | H4' | 108.2° | 109.9° |
| O4' | C4' | C5' | 98.4° | 109.9° |
| O4' | C4' | H4' | 109.8° | 109.9° |
| C4' | C5' | O5' | 109.6° | 109.4° |
| C5' | C4' | H4' | 108.5° | 110.0° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5'A | 109.4° | 109.5° |
| O5' | C5' | H5' | 109.5° | 109.4° |
| O5' | C5' | H5'A | 109.5° | 109.5° |
| C5' | O5' | HO5' | 109.5° | 114.0° |
| HN | N | HNA | 109.5° | 111.0° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
| HB | CB | HBA | 109.5° | 109.5° |
| HD | CD | HDA | 109.5° | 109.5° |
| HD | CD | HDB | 109.5° | 109.5° |
| HDA | CD | HDB | 109.5° | 109.5° |
| HG | CG | HGA | 109.5° | 109.5° |
| H5' | C5' | H5'A | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | N10 | 174.9° | 179.7° |
| O | C | CA | N | 174.2° | 20.0° |
| O | C | CA | CB | 3.2° | 100.0° |
| O | C | N10 | C2' | 2.0° | 0.0° |
| O | C | CA | HA | 91.0° | 140.0° |
| O | C | N10 | HN10 | 178.0° | 180.0° |
| C | CA | N | CB | 171.0° | 120.0° |
| C | CA | N | HA | 94.8° | 120.0° |
| C | CA | CB | HA | 94.2° | 120.0° |
| C | CA | CB | CG | 63.4° | 175.0° |
| CA | C | N10 | C2' | 176.7° | 179.7° |
| C | CA | N | HN | 180.0° | 64.0° |
| C | CA | N | HNA | 60.0° | 60.0° |
| C | CA | CB | HB | 176.5° | 65.0° |
| C | CA | CB | HBA | 56.7° | 55.0° |
| CA | C | N10 | HN10 | 3.4° | 0.2° |
| N10 | C | CA | N | 10.9° | 160.3° |
| N10 | C | CA | CB | 178.1° | 79.7° |
| C | N10 | C2' | C1' | 151.9° | 155.0° |
| C | N10 | C2' | HN10 | 180.0° | 180.0° |
| C | N10 | C2' | C3' | 92.7° | 92.3° |
| N10 | C | CA | HA | 83.9° | 40.3° |
| C | N10 | C2' | H2' | 30.8° | 31.4° |
| N | CA | CB | HA | 94.2° | 120.0° |
| N | CA | CB | CG | 125.0° | 65.0° |
| CA | N | HN | HNA | 120.0° | 124.0° |
| N | CA | CB | HB | 4.9° | 54.9° |
| N | CA | CB | HBA | 114.9° | 175.0° |
| N1 | C2 | N3 | H2 | 180.0° | 179.9° |
| N1 | C2 | N3 | C4 | 1.0° | 0.1° |
| C2 | N1 | C6 | C5 | 2.4° | 0.0° |
| C2 | N1 | C6 | N6 | 177.8° | 180.0° |
| C6 | N1 | C2 | N3 | 2.0° | 0.1° |
| N1 | C6 | C5 | C4 | 1.8° | 0.0° |
| N1 | C6 | C5 | N6 | 179.8° | 180.0° |
| N1 | C6 | C5 | N7 | 178.4° | 179.9° |
| C6 | N1 | C2 | H2 | 177.9° | 180.0° |
| N1 | C6 | N6 | HN6 | 0.0° | 0.1° |
| N1 | C6 | N6 | HN6A | 120.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.4° | 0.0° |
| C2 | N3 | C4 | N9 | 179.5° | 180.0° |
| N3 | C4 | C5 | N9 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.8° | 0.0° |
| N3 | C4 | C5 | N7 | 179.4° | 180.0° |
| N3 | C4 | N9 | C8 | 179.8° | 180.0° |
| N3 | C4 | N9 | C1' | 1.5° | 0.0° |
| C4 | N3 | C2 | H2 | 178.9° | 179.9° |
| C4 | C5 | C6 | N7 | 179.8° | 179.9° |
| C4 | C5 | C6 | N6 | 178.4° | 180.0° |
| C4 | C5 | N7 | C8 | 0.9° | 0.0° |
| C5 | C4 | N9 | C8 | 0.3° | 0.0° |
| C5 | C4 | N9 | C1' | 178.4° | 180.0° |
| N9 | C4 | C5 | C6 | 179.2° | 180.0° |
| N9 | C4 | C5 | N7 | 0.7° | 0.0° |
| C4 | N9 | C8 | N7 | 0.3° | 0.0° |
| C4 | N9 | C8 | C1' | 178.6° | 180.0° |
| C4 | N9 | C1' | C2' | 152.2° | 85.0° |
| C4 | N9 | C1' | O4' | 81.9° | 160.9° |
| C4 | N9 | C8 | H8 | 179.8° | 180.0° |
| C4 | N9 | C1' | H1' | 35.6° | 37.9° |
| C6 | C5 | N7 | C8 | 179.0° | 179.9° |
| C5 | C6 | N6 | HN6 | 179.8° | 180.0° |
| C5 | C6 | N6 | HN6A | 59.7° | 0.0° |
| N7 | C5 | C6 | N6 | 1.4° | 0.1° |
| C5 | N7 | C8 | N9 | 0.7° | 0.0° |
| C5 | N7 | C8 | H8 | 179.3° | 180.0° |
| C6 | N6 | HN6 | HN6A | 120.0° | 180.0° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 178.9° | 180.0° |
| C8 | N9 | C1' | C2' | 26.2° | 95.0° |
| C8 | N9 | C1' | O4' | 99.7° | 19.1° |
| C8 | N9 | C1' | H1' | 142.8° | 142.2° |
| N9 | C1' | C2' | O4' | 129.7° | 118.5° |
| N9 | C1' | C2' | H1' | 116.8° | 122.8° |
| N9 | C1' | O4' | H1' | 117.0° | 122.9° |
| N9 | C1' | C2' | N10 | 121.2° | 86.2° |
| N9 | C1' | C2' | C3' | 120.7° | 155.6° |
| N9 | C1' | O4' | C4' | 120.1° | 158.6° |
| C1' | N9 | C8 | H8 | 1.2° | 0.0° |
| N9 | C1' | C2' | H2' | 0.9° | 37.3° |
| CA | CB | CG | HB | 120.1° | 120.0° |
| CA | CB | CG | HBA | 120.1° | 120.0° |
| CA | CB | CG | CD | 62.2° | 180.0° |
| CB | CA | N | HN | 8.9° | 176.0° |
| CB | CA | N | HNA | 129.0° | 59.9° |
| CA | CB | HB | HBA | 119.7° | 120.0° |
| CA | CB | CG | HG | 177.1° | 60.0° |
| CA | CB | CG | HGA | 58.5° | 60.0° |
| CB | CG | CD | HG | 120.7° | 119.9° |
| CB | CG | CD | HGA | 120.7° | 120.0° |
| CG | CB | CA | HA | 30.8° | 55.0° |
| CG | CB | HB | HBA | 119.7° | 120.1° |
| CB | CG | CD | HD | 180.0° | 60.0° |
| CB | CG | CD | HDA | 60.0° | 60.0° |
| CB | CG | CD | HDB | 60.0° | 180.0° |
| CB | CG | HG | HGA | 117.9° | 120.0° |
| CD | CG | CB | HB | 57.9° | 60.0° |
| CD | CG | CB | HBA | 177.7° | 60.0° |
| CG | CD | HD | HDA | 120.0° | 120.0° |
| CG | CD | HD | HDB | 120.0° | 120.0° |
| CG | CD | HDA | HDB | 120.0° | 119.9° |
| CD | CG | HG | HGA | 118.0° | 120.0° |
| C2' | C1' | O4' | H1' | 112.6° | 118.6° |
| C1' | C2' | N10 | C3' | 115.3° | 112.7° |
| C1' | C2' | N10 | H2' | 121.2° | 123.6° |
| C1' | C2' | C3' | H2' | 119.7° | 118.2° |
| C1' | C2' | C3' | O3' | 129.9° | 97.8° |
| C1' | C2' | C3' | C4' | 4.6° | 20.9° |
| C2' | C1' | O4' | C4' | 10.3° | 40.1° |
| C1' | C2' | N10 | HN10 | 28.0° | 25.0° |
| C1' | C2' | C3' | H3' | 108.6° | 139.7° |
| O4' | C1' | C2' | N10 | 109.1° | 155.2° |
| O4' | C1' | C2' | C3' | 9.0° | 37.0° |
| C1' | O4' | C4' | C3' | 7.5° | 26.5° |
| C1' | O4' | C4' | C5' | 120.5° | 145.9° |
| O4' | C1' | C2' | H2' | 128.8° | 81.2° |
| C1' | O4' | C4' | H4' | 126.3° | 92.9° |
| N10 | C2' | C3' | H2' | 124.3° | 123.6° |
| N10 | C2' | C3' | O3' | 14.0° | 20.4° |
| N10 | C2' | C3' | C4' | 111.3° | 139.1° |
| N10 | C2' | C1' | H1' | 4.4° | 36.5° |
| N10 | C2' | C3' | H3' | 135.5° | 102.1° |
| C2' | C3' | O3' | C4' | 120.9° | 114.8° |
| C2' | C3' | O3' | H3' | 121.0° | 122.5° |
| C2' | C3' | C4' | H3' | 113.1° | 118.7° |
| C2' | C3' | C4' | O4' | 1.3° | 2.1° |
| C2' | C3' | C4' | C5' | 112.5° | 121.5° |
| C3' | C2' | C1' | H1' | 122.5° | 81.7° |
| C3' | C2' | N10 | HN10 | 87.3° | 87.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C2' | C3' | C4' | H4' | 121.1° | 117.4° |
| O3' | C3' | C4' | H3' | 118.7° | 122.6° |
| O3' | C3' | C4' | O4' | 126.9° | 120.7° |
| O3' | C3' | C4' | C5' | 119.4° | 119.9° |
| O3' | C3' | C2' | H2' | 110.3° | 144.0° |
| O3' | C3' | C4' | H4' | 7.1° | 1.3° |
| C3' | C4' | O4' | C5' | 127.9° | 119.3° |
| C3' | C4' | O4' | H4' | 118.8° | 119.4° |
| C3' | C4' | C5' | H4' | 126.3° | 121.0° |
| C3' | C4' | C5' | O5' | 179.0° | 175.0° |
| C4' | C3' | C2' | H2' | 124.4° | 97.3° |
| C4' | C3' | O3' | HO3' | 59.1° | 65.2° |
| C3' | C4' | C5' | H5' | 58.9° | 55.0° |
| C3' | C4' | C5' | H5'A | 61.0° | 65.0° |
| O4' | C4' | C5' | H4' | 114.3° | 121.2° |
| O4' | C4' | C5' | O5' | 61.6° | 67.2° |
| C4' | O4' | C1' | H1' | 122.9° | 78.5° |
| O4' | C4' | C3' | H3' | 114.4° | 116.7° |
| O4' | C4' | C5' | H5' | 178.3° | 172.8° |
| O4' | C4' | C5' | H5'A | 58.4° | 52.7° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C5' | C4' | C3' | H3' | 0.7° | 2.7° |
| C4' | C5' | H5' | H5'A | 119.9° | 120.1° |
| C4' | C5' | O5' | HO5' | 180.0° | 180.0° |
| O5' | C5' | C4' | H4' | 52.6° | 53.9° |
| O5' | C5' | H5' | H5'A | 120.0° | 120.0° |
| HN | N | CA | HA | 85.2° | 56.0° |
| HNA | N | CA | HA | 34.8° | 180.0° |
| HA | CA | CB | HB | 89.3° | 175.0° |
| HA | CA | CB | HBA | 150.9° | 65.0° |
| HB | CB | CG | HG | 62.8° | 180.0° |
| HB | CB | CG | HGA | 178.6° | 60.0° |
| HBA | CB | CG | HG | 57.1° | 59.9° |
| HBA | CB | CG | HGA | 61.6° | 180.0° |
| HD | CD | HDA | HDB | 120.0° | 120.1° |
| HD | CD | CG | HG | 59.4° | 180.0° |
| HD | CD | CG | HGA | 59.3° | 60.0° |
| HDA | CD | CG | HG | 179.3° | 59.9° |
| HDA | CD | CG | HGA | 60.7° | 180.0° |
| HDB | CD | CG | HG | 60.7° | 60.0° |
| HDB | CD | CG | HGA | 179.3° | 60.0° |
| H1' | C1' | C2' | H2' | 117.7° | 160.1° |
| HN10 | N10 | C2' | H2' | 149.2° | 148.6° |
| H2' | C2' | C3' | H3' | 11.2° | 21.5° |
| H3' | C3' | O3' | HO3' | 59.1° | 57.5° |
| H3' | C3' | C4' | H4' | 125.8° | 123.8° |
| H4' | C4' | C5' | H5' | 67.4° | 66.0° |
| H4' | C4' | C5' | H5'A | 172.7° | 173.9° |
| H5' | C5' | O5' | HO5' | 60.0° | 60.0° |
| H5'A | C5' | O5' | HO5' | 60.0° | 60.0° |
