VQV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3P | P | doub | 1.48Å | 1.51Å | |
| P | O1P | sing | 1.61Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.34Å | |
| C5 | C4 | sing | 1.42Å | 1.39Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| O2B | P2 | doub | 1.48Å | 1.51Å | |
| C4 | O4 | doub | 1.22Å | 1.36Å | |
| C4 | N3 | sing | 1.35Å | 1.35Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| O3' | P2 | sing | 1.61Å | 1.61Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2 | N3 | sing | 1.35Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| P2 | O2C | sing | 1.61Å | 1.51Å | |
| P2 | O2A | sing | 1.61Å | 1.51Å | |
| C6 | H1 | sing | 1.08Å | 1.08Å | |
| C5 | H2 | sing | 1.08Å | 1.08Å | |
| C1' | H3 | sing | 1.09Å | 1.10Å | |
| C2' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C5' | H8 | sing | 1.09Å | 1.10Å | |
| N3 | H9 | sing | 0.97Å | 1.00Å | |
| O1P | H10 | sing | 0.97Å | 0.95Å | |
| O2' | H11 | sing | 0.97Å | 0.95Å | |
| O2A | H12 | sing | 0.97Å | 0.95Å | |
| O2C | H13 | sing | 0.97Å | 0.95Å | |
| O2P | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3P | P | O1P | 110.1° | 109.5° |
| O3P | P | O5' | 108.0° | 109.5° |
| O3P | P | O2P | 110.4° | 109.5° |
| O1P | P | O5' | 110.1° | 109.4° |
| O1P | P | O2P | 109.4° | 109.5° |
| P | O1P | H10 | 109.5° | 114.0° |
| O5' | P | O2P | 108.8° | 109.4° |
| P | O5' | C5' | 120.9° | 123.0° |
| P | O2P | H14 | 109.5° | 114.0° |
| O5' | C5' | C4' | 108.0° | 109.5° |
| O5' | C5' | H7 | 109.8° | 109.4° |
| O5' | C5' | H8 | 109.8° | 109.5° |
| C5' | C4' | O4' | 110.1° | 110.4° |
| C5' | C4' | C3' | 113.5° | 110.4° |
| C5' | C4' | H6 | 108.4° | 110.3° |
| C4' | C5' | H7 | 109.8° | 109.5° |
| C4' | C5' | H8 | 109.8° | 109.5° |
| C4' | O4' | C1' | 109.8° | 105.2° |
| O4' | C4' | C3' | 106.7° | 104.8° |
| O4' | C4' | H6 | 109.6° | 110.4° |
| O4' | C1' | N1 | 111.0° | 110.4° |
| O4' | C1' | C2' | 106.7° | 104.8° |
| O4' | C1' | H3 | 109.5° | 110.5° |
| C4' | C3' | O3' | 110.7° | 110.5° |
| C4' | C3' | C2' | 102.3° | 104.1° |
| C4' | C3' | H5 | 110.9° | 110.6° |
| C3' | C4' | H6 | 108.4° | 110.4° |
| C5 | C6 | N1 | 120.4° | 119.7° |
| C6 | C5 | C4 | 118.8° | 119.1° |
| C5 | C6 | H1 | 119.8° | 120.1° |
| C6 | C5 | H2 | 120.6° | 120.4° |
| C6 | N1 | C1' | 119.6° | 119.7° |
| C6 | N1 | C2 | 120.1° | 120.6° |
| N1 | C6 | H1 | 119.8° | 120.2° |
| C5 | C4 | O4 | 120.1° | 120.3° |
| C5 | C4 | N3 | 119.2° | 119.3° |
| C4 | C5 | H2 | 120.6° | 120.4° |
| N1 | C1' | C2' | 112.4° | 110.4° |
| C1' | N1 | C2 | 120.3° | 119.7° |
| N1 | C1' | H3 | 109.0° | 110.4° |
| C1' | C2' | C3' | 104.6° | 104.0° |
| C1' | C2' | O2' | 110.1° | 110.5° |
| C2' | C1' | H3 | 108.2° | 110.4° |
| C1' | C2' | H4 | 110.8° | 110.5° |
| N1 | C2 | N3 | 121.0° | 120.9° |
| N1 | C2 | O2 | 119.9° | 119.5° |
| O2B | P2 | O3' | 109.2° | 109.5° |
| O2B | P2 | O2C | 109.9° | 109.5° |
| O2B | P2 | O2A | 109.5° | 109.5° |
| O4 | C4 | N3 | 120.7° | 120.4° |
| C4 | N3 | C2 | 120.6° | 120.3° |
| C4 | N3 | H9 | 119.7° | 119.9° |
| O3' | C3' | C2' | 109.3° | 110.5° |
| C3' | O3' | P2 | 122.1° | 123.0° |
| O3' | C3' | H5 | 112.3° | 110.5° |
| C3' | C2' | O2' | 107.6° | 110.6° |
| C3' | C2' | H4 | 111.1° | 110.6° |
| C2' | C3' | H5 | 110.9° | 110.5° |
| O3' | P2 | O2C | 109.3° | 109.5° |
| O3' | P2 | O2A | 108.2° | 109.4° |
| O2' | C2' | H4 | 112.3° | 110.5° |
| C2' | O2' | H11 | 109.5° | 114.0° |
| N3 | C2 | O2 | 119.1° | 119.6° |
| C2 | N3 | H9 | 119.7° | 119.8° |
| O2C | P2 | O2A | 110.7° | 109.5° |
| P2 | O2C | H13 | 109.5° | 114.0° |
| P2 | O2A | H12 | 109.5° | 114.0° |
| H7 | C5' | H8 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3P | P | O1P | O5' | 118.9° | 120.0° |
| O3P | P | O1P | O2P | 121.5° | 120.1° |
| O3P | P | O5' | O2P | 119.9° | 120.0° |
| O3P | P | O5' | C5' | 149.9° | 55.0° |
| O3P | P | O1P | H10 | 0.0° | 60.0° |
| O3P | P | O2P | H14 | 0.0° | 180.0° |
| O1P | P | O5' | O2P | 119.9° | 120.0° |
| O1P | P | O5' | C5' | 89.9° | 175.0° |
| O1P | P | O2P | H14 | 121.3° | 60.0° |
| P | O5' | C5' | C4' | 63.3° | 180.0° |
| P | O5' | C5' | H7 | 56.5° | 60.0° |
| P | O5' | C5' | H8 | 176.9° | 60.0° |
| O5' | P | O1P | H10 | 119.0° | 180.0° |
| O5' | P | O2P | H14 | 118.4° | 60.0° |
| O2P | P | O5' | C5' | 30.1° | 65.0° |
| O2P | P | O1P | H10 | 121.5° | 60.1° |
| O5' | C5' | C4' | H7 | 119.8° | 120.0° |
| O5' | C5' | C4' | H8 | 119.8° | 120.0° |
| O5' | C5' | C4' | O4' | 72.1° | 69.5° |
| O5' | C5' | C4' | C3' | 168.3° | 175.0° |
| O5' | C5' | C4' | H6 | 47.7° | 52.8° |
| O5' | C5' | H7 | H8 | 120.7° | 120.0° |
| C5' | C4' | O4' | C3' | 123.6° | 118.9° |
| C5' | C4' | O4' | H6 | 119.1° | 122.2° |
| C5' | C4' | O4' | C1' | 144.5° | 159.4° |
| C5' | C4' | C3' | H6 | 120.5° | 122.2° |
| C5' | C4' | C3' | O3' | 36.1° | 24.3° |
| C5' | C4' | C3' | C2' | 152.5° | 143.0° |
| C5' | C4' | C3' | H5 | 89.2° | 98.4° |
| C4' | C5' | H7 | H8 | 120.7° | 120.0° |
| O4' | C4' | C3' | H6 | 118.0° | 118.9° |
| C4' | O4' | C1' | N1 | 120.9° | 78.3° |
| C4' | O4' | C1' | C2' | 1.8° | 40.5° |
| O4' | C4' | C3' | O3' | 85.4° | 94.6° |
| O4' | C4' | C3' | C2' | 31.0° | 24.1° |
| C4' | O4' | C1' | H3 | 118.7° | 159.4° |
| O4' | C4' | C3' | H5 | 149.3° | 142.7° |
| O4' | C4' | C5' | H7 | 168.1° | 50.4° |
| O4' | C4' | C5' | H8 | 47.6° | 170.5° |
| C1' | O4' | C4' | C3' | 20.9° | 40.6° |
| O4' | C1' | N1 | C6 | 19.5° | 67.9° |
| O4' | C1' | N1 | C2' | 119.4° | 115.4° |
| O4' | C1' | N1 | H3 | 120.7° | 122.4° |
| O4' | C1' | C2' | H3 | 117.8° | 118.9° |
| O4' | C1' | N1 | C2 | 160.2° | 111.9° |
| O4' | C1' | C2' | C3' | 17.8° | 23.9° |
| O4' | C1' | C2' | O2' | 97.5° | 142.6° |
| O4' | C1' | C2' | H4 | 137.5° | 94.8° |
| C1' | O4' | C4' | H6 | 96.3° | 78.4° |
| C4' | C3' | C2' | C1' | 29.0° | 0.1° |
| C4' | C3' | O3' | C2' | 111.9° | 114.7° |
| C4' | C3' | O3' | H5 | 124.5° | 122.8° |
| C4' | C3' | C2' | H5 | 118.2° | 118.7° |
| C4' | C3' | O3' | P2 | 130.4° | 123.9° |
| C4' | C3' | C2' | O2' | 88.1° | 118.6° |
| C4' | C3' | C2' | H4 | 148.6° | 118.7° |
| C3' | C4' | C5' | H7 | 48.5° | 65.0° |
| C3' | C4' | C5' | H8 | 71.9° | 55.0° |
| C5 | C6 | N1 | H1 | 180.0° | 179.9° |
| C6 | C5 | C4 | H2 | 180.0° | 180.0° |
| C5 | C6 | N1 | C1' | 179.9° | 179.7° |
| C5 | C6 | N1 | C2 | 0.2° | 0.1° |
| C6 | C5 | C4 | O4 | 180.0° | 179.9° |
| C6 | C5 | C4 | N3 | 0.0° | 0.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.1° |
| C6 | N1 | C1' | C2 | 179.7° | 179.8° |
| C6 | N1 | C1' | C2' | 99.9° | 47.4° |
| C6 | N1 | C2 | N3 | 0.1° | 0.1° |
| C6 | N1 | C2 | O2 | 179.8° | 179.9° |
| N1 | C6 | C5 | H2 | 179.8° | 180.0° |
| C6 | N1 | C1' | H3 | 140.2° | 169.7° |
| C5 | C4 | O4 | N3 | 179.9° | 180.0° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| C4 | C5 | C6 | H1 | 179.8° | 180.0° |
| C5 | C4 | N3 | H9 | 180.0° | 179.9° |
| N1 | C1' | C2' | H3 | 120.4° | 122.3° |
| N1 | C1' | C2' | C3' | 139.7° | 94.9° |
| N1 | C1' | C2' | O2' | 24.4° | 23.8° |
| C1' | N1 | C2 | N3 | 179.8° | 179.7° |
| C1' | N1 | C2 | O2 | 0.1° | 0.2° |
| C1' | N1 | C6 | H1 | 0.1° | 0.2° |
| N1 | C1' | C2' | H4 | 100.6° | 146.4° |
| C2' | C1' | N1 | C2 | 80.4° | 132.8° |
| C1' | C2' | C3' | O3' | 88.3° | 118.6° |
| C1' | C2' | C3' | O2' | 117.1° | 118.7° |
| C1' | C2' | C3' | H4 | 119.6° | 118.6° |
| C1' | C2' | O2' | H4 | 124.1° | 122.6° |
| C1' | C2' | C3' | H5 | 147.3° | 118.8° |
| C1' | C2' | O2' | H11 | 180.0° | 61.4° |
| N1 | C2 | N3 | C4 | 0.0° | 0.1° |
| N1 | C2 | N3 | O2 | 179.9° | 180.0° |
| C2 | N1 | C6 | H1 | 179.8° | 180.0° |
| C2 | N1 | C1' | H3 | 39.5° | 10.5° |
| N1 | C2 | N3 | H9 | 180.0° | 180.0° |
| O2B | P2 | O3' | C3' | 101.4° | 55.0° |
| O2B | P2 | O3' | O2C | 120.2° | 120.0° |
| O2B | P2 | O3' | O2A | 119.1° | 120.0° |
| O2B | P2 | O2C | O2A | 121.1° | 120.0° |
| O2B | P2 | O2A | H12 | 0.0° | 180.0° |
| O2B | P2 | O2C | H13 | 0.0° | 60.0° |
| O4 | C4 | N3 | C2 | 179.9° | 179.9° |
| O4 | C4 | C5 | H2 | 0.0° | 0.0° |
| O4 | C4 | N3 | H9 | 0.1° | 0.0° |
| C4 | N3 | C2 | H9 | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.9° | 180.0° |
| N3 | C4 | C5 | H2 | 180.0° | 180.0° |
| O3' | C3' | C2' | H5 | 124.4° | 122.6° |
| O3' | C3' | C2' | O2' | 154.6° | 122.7° |
| C3' | O3' | P2 | O2C | 18.8° | 175.0° |
| C3' | O3' | P2 | O2A | 139.5° | 65.0° |
| O3' | C3' | C2' | H4 | 31.3° | 0.0° |
| O3' | C3' | C4' | H6 | 156.6° | 146.5° |
| C2' | C3' | O3' | P2 | 117.7° | 121.4° |
| C3' | C2' | O2' | H4 | 122.5° | 122.8° |
| C3' | C2' | C1' | H3 | 100.0° | 142.9° |
| C2' | C3' | C4' | H6 | 87.0° | 94.8° |
| C3' | C2' | O2' | H11 | 66.6° | 176.0° |
| O3' | P2 | O2C | O2A | 119.1° | 120.0° |
| P2 | O3' | C3' | H5 | 5.9° | 1.2° |
| O3' | P2 | O2A | H12 | 119.0° | 60.0° |
| O3' | P2 | O2C | H13 | 119.8° | 180.0° |
| O2' | C2' | C1' | H3 | 144.7° | 98.4° |
| O2' | C2' | C3' | H5 | 30.2° | 0.1° |
| O2 | C2 | N3 | H9 | 0.1° | 0.1° |
| O2C | P2 | O2A | H12 | 121.3° | 60.0° |
| O2A | P2 | O2C | H13 | 121.1° | 60.0° |
| H1 | C6 | C5 | H2 | 0.2° | 0.1° |
| H3 | C1' | C2' | H4 | 19.8° | 24.2° |
| H4 | C2' | C3' | H5 | 93.1° | 122.6° |
| H4 | C2' | O2' | H11 | 55.9° | 61.2° |
| H5 | C3' | C4' | H6 | 31.3° | 23.8° |
| H6 | C4' | C5' | H7 | 72.0° | 172.7° |
| H6 | C4' | C5' | H8 | 167.5° | 67.2° |
