VPV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	C2	doub	1.21Å	1.25Å
O12	C9	doub	1.21Å	1.23Å
C6	O10	sing	1.43Å	1.46Å
C6	C7	sing	1.53Å	1.52Å
C6	C5	sing	1.53Å	1.45Å
C8	C9	sing	1.51Å	1.53Å
C8	C7	sing	1.53Å	1.43Å
C9	O11	sing	1.34Å	1.26Å
C2	O4	sing	1.35Å	1.26Å
C2	C1	sing	1.48Å	1.46Å
C5	C1	sing	1.51Å	1.46Å
C1	NZ	doub	1.28Å	1.32Å
NZ	CE	sing	1.46Å	1.47Å
CE	CD	sing	1.53Å	1.51Å
CD	CG	sing	1.53Å	1.53Å
CG	CB	sing	1.53Å	1.51Å
CB	CA	sing	1.53Å	1.52Å
CA	C	sing	1.51Å	1.53Å
CA	N	sing	1.47Å	1.40Å
C	O	doub	1.21Å	1.24Å
C	OXT	sing	1.34Å	1.49Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
O11	H4	sing	0.97Å	0.95Å
C8	H5	sing	1.09Å	1.10Å
C8	H6	sing	1.09Å	1.10Å
C7	H7	sing	1.09Å	1.10Å
C7	H8	sing	1.09Å	1.10Å
C6	H9	sing	1.09Å	1.10Å
O10	H10	sing	0.97Å	0.95Å
C5	H11	sing	1.09Å	1.10Å
C5	H12	sing	1.09Å	1.10Å
O4	H13	sing	0.97Å	0.95Å
CE	H14	sing	1.09Å	1.10Å
CE	H15	sing	1.09Å	1.10Å
CD	H16	sing	1.09Å	1.10Å
CD	H17	sing	1.09Å	1.10Å
CG	H18	sing	1.09Å	1.10Å
CG	H19	sing	1.09Å	1.10Å
CB	H20	sing	1.09Å	1.10Å
CB	H21	sing	1.09Å	1.10Å
CA	HA	sing	1.09Å	1.10Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	C2	O4	124.2°	120.0°
O3	C2	C1	121.3°	120.0°
O12	C9	C8	119.8°	119.9°
O12	C9	O11	124.2°	120.0°
O10	C6	C7	106.2°	109.5°
O10	C6	C5	99.5°	109.5°
O10	C6	H9	108.3°	109.5°
C6	O10	H10	109.5°	114.0°
C7	C6	C5	125.5°	109.4°
C6	C7	C8	108.2°	109.5°
C6	C7	H7	109.8°	109.5°
C6	C7	H8	109.8°	109.5°
C7	C6	H9	107.7°	109.5°
C6	C5	C1	131.6°	109.5°
C5	C6	H9	108.5°	109.5°
C6	C5	H11	103.7°	109.5°
C6	C5	H12	103.7°	109.5°
C9	C8	C7	108.6°	109.5°
C8	C9	O11	115.2°	120.1°
C9	C8	H5	109.7°	109.4°
C9	C8	H6	109.7°	109.5°
C7	C8	H5	109.7°	109.5°
C7	C8	H6	109.7°	109.5°
C8	C7	H7	109.8°	109.5°
C8	C7	H8	109.8°	109.5°
C9	O11	H4	109.5°	117.0°
O4	C2	C1	114.3°	120.0°
C2	O4	H13	109.5°	117.0°
C2	C1	C5	128.0°	120.0°
C2	C1	NZ	117.4°	120.0°
C5	C1	NZ	114.4°	120.0°
C1	C5	H11	103.7°	109.5°
C1	C5	H12	103.7°	109.5°
C1	NZ	CE	126.7°	120.0°
NZ	CE	CD	109.3°	109.5°
NZ	CE	H14	109.5°	109.5°
NZ	CE	H15	109.5°	109.5°
CE	CD	CG	109.6°	109.5°
CD	CE	H14	109.5°	109.5°
CD	CE	H15	109.5°	109.5°
CE	CD	H16	109.4°	109.4°
CE	CD	H17	109.4°	109.5°
CD	CG	CB	110.8°	109.4°
CG	CD	H16	109.5°	109.5°
CG	CD	H17	109.4°	109.5°
CD	CG	H18	109.1°	109.5°
CD	CG	H19	109.1°	109.5°
CG	CB	CA	114.0°	109.4°
CB	CG	H18	109.1°	109.5°
CB	CG	H19	109.2°	109.5°
CG	CB	H20	108.3°	109.5°
CG	CB	H21	108.3°	109.5°
CB	CA	C	110.6°	109.4°
CB	CA	N	111.1°	109.5°
CA	CB	H20	108.3°	109.5°
CA	CB	H21	108.4°	109.5°
CB	CA	HA	110.6°	109.5°
C	CA	N	101.4°	109.5°
CA	C	O	120.7°	120.0°
CA	C	OXT	116.1°	120.0°
C	CA	HA	110.5°	109.5°
CA	N	H	109.5°	111.0°
CA	N	H2	109.5°	111.1°
N	CA	HA	112.4°	109.5°
O	C	OXT	123.3°	120.0°
C	OXT	HXT	109.5°	117.0°
H	N	H2	109.5°	111.0°
H5	C8	H6	109.5°	109.5°
H7	C7	H8	109.5°	109.5°
H11	C5	H12	109.5°	109.4°
H14	CE	H15	109.5°	109.4°
H16	CD	H17	109.5°	109.5°
H18	CG	H19	109.5°	109.5°
H20	CB	H21	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	C2	O4	C1	174.5°	180.0°
O3	C2	C1	C5	0.7°	0.0°
O3	C2	C1	NZ	175.5°	180.0°
O3	C2	O4	H13	0.0°	0.1°
O12	C9	C8	O11	170.4°	180.0°
O12	C9	C8	C7	98.4°	0.0°
O12	C9	O11	H4	0.0°	0.0°
O12	C9	C8	H5	141.8°	120.0°
O12	C9	C8	H6	21.5°	120.0°
O10	C6	C7	C5	114.7°	120.0°
O10	C6	C7	H9	115.9°	120.0°
O10	C6	C5	H9	113.1°	120.0°
O10	C6	C7	C8	172.3°	65.0°
O10	C6	C5	C1	158.2°	65.0°
O10	C6	C7	H7	67.9°	55.0°
O10	C6	C7	H8	52.5°	175.0°
O10	C6	C5	H11	35.3°	175.0°
O10	C6	C5	H12	79.0°	55.0°
C7	C6	C5	H9	129.1°	120.0°
C6	C7	C8	C9	178.1°	180.0°
C6	C7	C8	H7	119.8°	120.0°
C6	C7	C8	H8	119.8°	120.0°
C7	C6	C5	C1	84.0°	175.0°
C6	C7	C8	H5	62.1°	60.0°
C6	C7	C8	H6	58.2°	60.0°
C6	C7	H7	H8	120.6°	120.0°
C7	C6	O10	H10	180.0°	59.9°
C7	C6	C5	H11	153.1°	55.0°
C7	C6	C5	H12	38.8°	65.0°
C5	C6	C7	C8	73.0°	175.0°
C6	C5	C1	C2	20.9°	95.7°
C6	C5	C1	H11	122.8°	120.0°
C6	C5	C1	H12	122.8°	120.0°
C6	C5	C1	NZ	164.1°	84.2°
C5	C6	C7	H7	46.8°	65.0°
C5	C6	C7	H8	167.2°	55.0°
C5	C6	O10	H10	48.6°	60.0°
C6	C5	H11	H12	110.1°	120.0°
C9	C8	C7	H5	119.8°	120.0°
C9	C8	C7	H6	119.9°	120.0°
C8	C9	O11	H4	169.9°	180.0°
C9	C8	H5	H6	120.4°	120.0°
C9	C8	C7	H7	62.1°	60.0°
C9	C8	C7	H8	58.3°	60.0°
C7	C8	C9	O11	91.3°	180.0°
C7	C8	H5	H6	120.4°	120.0°
C8	C7	H7	H8	120.5°	120.0°
C8	C7	C6	H9	56.5°	55.0°
O11	C9	C8	H5	28.6°	60.0°
O11	C9	C8	H6	148.9°	60.0°
O4	C2	C1	C5	175.3°	180.0°
O4	C2	C1	NZ	9.8°	0.0°
C2	C1	C5	NZ	175.0°	180.0°
C2	C1	NZ	CE	176.9°	174.0°
C2	C1	C5	H11	101.9°	144.2°
C2	C1	C5	H12	143.7°	24.3°
C1	C2	O4	H13	174.5°	180.0°
C5	C1	NZ	CE	7.6°	6.0°
C1	C5	C6	H9	45.1°	55.0°
C1	C5	H11	H12	110.2°	120.0°
C1	NZ	CE	CD	174.7°	117.0°
NZ	C1	C5	H11	73.1°	35.8°
NZ	C1	C5	H12	41.3°	155.7°
C1	NZ	CE	H14	54.7°	122.9°
C1	NZ	CE	H15	65.4°	3.0°
NZ	CE	CD	H14	120.0°	120.0°
NZ	CE	CD	H15	120.0°	120.1°
NZ	CE	CD	CG	176.8°	180.0°
NZ	CE	H14	H15	120.1°	120.0°
NZ	CE	CD	H16	56.8°	60.0°
NZ	CE	CD	H17	63.2°	60.0°
CE	CD	CG	H16	120.0°	119.9°
CE	CD	CG	H17	120.0°	120.0°
CE	CD	CG	CB	176.7°	180.0°
CD	CE	H14	H15	120.1°	120.0°
CE	CD	H16	H17	119.9°	119.9°
CE	CD	CG	H18	63.1°	60.0°
CE	CD	CG	H19	56.5°	60.0°
CD	CG	CB	H18	120.2°	120.0°
CD	CG	CB	H19	120.2°	120.0°
CD	CG	CB	CA	179.4°	180.0°
CG	CD	CE	H14	63.2°	60.0°
CG	CD	CE	H15	56.9°	59.9°
CG	CD	H16	H17	120.0°	120.1°
CD	CG	H18	H19	119.4°	120.0°
CD	CG	CB	H20	58.7°	60.0°
CD	CG	CB	H21	59.9°	60.0°
CG	CB	CA	H20	120.7°	120.0°
CG	CB	CA	H21	120.7°	120.0°
CG	CB	CA	C	62.5°	175.0°
CG	CB	CA	N	174.3°	65.0°
CB	CG	CD	H16	56.7°	60.0°
CB	CG	CD	H17	63.3°	60.0°
CB	CG	H18	H19	119.4°	120.0°
CG	CB	H20	H21	117.9°	120.0°
CG	CB	CA	HA	60.1°	55.0°
CB	CA	C	N	117.9°	119.9°
CB	CA	C	HA	122.7°	120.0°
CB	CA	N	HA	124.5°	120.1°
CB	CA	C	O	51.6°	100.0°
CB	CA	C	OXT	128.4°	80.4°
CB	CA	N	H	180.0°	176.1°
CB	CA	N	H2	60.0°	60.0°
CA	CB	CG	H18	60.4°	60.0°
CA	CB	CG	H19	59.2°	60.0°
CA	CB	H20	H21	117.9°	120.0°
C	CA	N	HA	118.0°	120.0°
CA	C	O	OXT	180.0°	179.6°
C	CA	N	H	62.5°	64.0°
C	CA	N	H2	57.5°	59.9°
C	CA	CB	H20	58.2°	55.0°
C	CA	CB	H21	176.8°	65.0°
CA	C	OXT	HXT	180.0°	179.7°
N	CA	C	O	66.3°	19.9°
N	CA	C	OXT	113.7°	159.7°
CA	N	H	H2	120.0°	124.0°
N	CA	CB	H20	53.6°	175.0°
N	CA	CB	H21	65.0°	54.9°
O	C	CA	HA	174.3°	139.9°
O	C	OXT	HXT	0.0°	0.1°
OXT	C	CA	HA	5.7°	39.7°
H	N	CA	HA	55.5°	56.0°
H2	N	CA	HA	175.5°	180.0°
H5	C8	C7	H7	57.7°	180.0°
H5	C8	C7	H8	178.1°	60.0°
H6	C8	C7	H7	178.0°	60.0°
H6	C8	C7	H8	61.6°	180.0°
H7	C7	C6	H9	176.3°	175.0°
H8	C7	C6	H9	63.3°	65.0°
H9	C6	O10	H10	64.6°	180.0°
H9	C6	C5	H11	77.7°	65.0°
H9	C6	C5	H12	167.9°	175.0°
H14	CE	CD	H16	176.8°	180.0°
H14	CE	CD	H17	56.8°	60.0°
H15	CE	CD	H16	63.2°	60.1°
H15	CE	CD	H17	176.8°	180.0°
H16	CD	CG	H18	176.9°	180.0°
H16	CD	CG	H19	63.5°	59.9°
H17	CD	CG	H18	56.9°	60.0°
H17	CD	CG	H19	176.5°	NaN°
H18	CG	CB	H20	178.9°	180.0°
H18	CG	CB	H21	60.3°	60.0°
H19	CG	CB	H20	61.5°	60.0°
H19	CG	CB	H21	179.9°	NaN°
H20	CB	CA	HA	179.2°	65.0°
H21	CB	CA	HA	60.5°	175.0°

Release date:	2021-09-22
Definition date:	2020-09-02
Last modified:	2023-11-03
Release status:	REL
Processing site:	RCSB
Derived from:	7JZ9