VPQ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| O4' | C4' | sing | 1.43Å | 1.42Å | |
| C4' | C3' | sing | 1.53Å | 1.53Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C3' | C2' | sing | 1.53Å | 1.53Å | |
| O6' | C6' | sing | 1.43Å | 1.43Å | |
| C6' | C5' | sing | 1.53Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.53Å | 1.54Å | |
| O5' | C1' | sing | 1.43Å | 1.43Å | |
| C1' | C7 | sing | 1.51Å | 1.51Å | |
| C7 | N1 | sing | 1.35Å | 1.43Å | |
| C7 | O7 | doub | 1.21Å | 1.20Å | |
| C2' | O1 | sing | 1.43Å | 1.83Å | |
| C5' | H1 | sing | 1.09Å | 1.10Å | |
| C4' | H2 | sing | 1.09Å | 1.10Å | |
| C3' | H3 | sing | 1.09Å | 1.10Å | |
| C2' | H4 | sing | 1.09Å | 1.10Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| C6' | H6 | sing | 1.09Å | 1.10Å | |
| C6' | H7 | sing | 1.09Å | 1.10Å | |
| O6' | H8 | sing | 0.97Å | 0.95Å | |
| O4' | H9 | sing | 0.97Å | 0.95Å | |
| O3' | H10 | sing | 0.97Å | 0.95Å | |
| N1 | H11 | sing | 0.97Å | 1.00Å | |
| N1 | H12 | sing | 0.97Å | 1.00Å | |
| O1 | H13 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 110.9° | 109.5° |
| O3' | C3' | C2' | 112.1° | 109.5° |
| O3' | C3' | H3 | 108.1° | 109.6° |
| C3' | O3' | H10 | 109.5° | 114.0° |
| O4' | C4' | C3' | 107.8° | 109.5° |
| O4' | C4' | C5' | 106.5° | 109.6° |
| O4' | C4' | H2 | 111.9° | 109.6° |
| C4' | O4' | H9 | 109.5° | 114.0° |
| C3' | C4' | C5' | 110.1° | 109.1° |
| C4' | C3' | C2' | 111.9° | 109.1° |
| C3' | C4' | H2 | 110.3° | 109.5° |
| C4' | C3' | H3 | 106.8° | 109.6° |
| C4' | C5' | C6' | 112.7° | 109.5° |
| C4' | C5' | O5' | 110.0° | 109.4° |
| C4' | C5' | H1 | 108.5° | 109.4° |
| C5' | C4' | H2 | 110.2° | 109.5° |
| C3' | C2' | C1' | 108.6° | 109.1° |
| C3' | C2' | O1 | 113.8° | 109.5° |
| C2' | C3' | H3 | 106.8° | 109.5° |
| C3' | C2' | H4 | 109.3° | 109.5° |
| O6' | C6' | C5' | 109.8° | 109.5° |
| O6' | C6' | H6 | 109.4° | 109.5° |
| O6' | C6' | H7 | 109.4° | 109.5° |
| C6' | O6' | H8 | 109.5° | 114.0° |
| C6' | C5' | O5' | 107.2° | 109.5° |
| C6' | C5' | H1 | 108.7° | 109.5° |
| C5' | C6' | H6 | 109.4° | 109.5° |
| C5' | C6' | H7 | 109.4° | 109.4° |
| C5' | O5' | C1' | 111.8° | 114.1° |
| O5' | C5' | H1 | 109.7° | 109.5° |
| C2' | C1' | O5' | 107.7° | 109.4° |
| C2' | C1' | C7 | 111.7° | 109.5° |
| C1' | C2' | O1 | 109.8° | 109.5° |
| C1' | C2' | H4 | 109.2° | 109.5° |
| C2' | C1' | H5 | 109.3° | 109.5° |
| O5' | C1' | C7 | 107.6° | 109.5° |
| O5' | C1' | H5 | 110.8° | 109.5° |
| C1' | C7 | N1 | 117.9° | 120.0° |
| C1' | C7 | O7 | 123.1° | 120.0° |
| C7 | C1' | H5 | 109.7° | 109.5° |
| N1 | C7 | O7 | 119.0° | 120.0° |
| C7 | N1 | H11 | 120.0° | 120.0° |
| C7 | N1 | H12 | 120.0° | 120.0° |
| O1 | C2' | H4 | 106.0° | 109.6° |
| C2' | O1 | H13 | 109.5° | 114.0° |
| H6 | C6' | H7 | 109.5° | 109.5° |
| H11 | N1 | H12 | 120.0° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 68.0° | 63.3° |
| O3' | C3' | C4' | C2' | 125.9° | 119.8° |
| O3' | C3' | C4' | H3 | 117.5° | 120.3° |
| O3' | C3' | C4' | C5' | 176.2° | 176.8° |
| O3' | C3' | C2' | H3 | 118.2° | 120.3° |
| O3' | C3' | C2' | C1' | 179.3° | 176.8° |
| O3' | C3' | C2' | O1 | 56.7° | 56.9° |
| O3' | C3' | C4' | H2 | 54.4° | 56.9° |
| O3' | C3' | C2' | H4 | 61.6° | 63.3° |
| O4' | C4' | C3' | C5' | 115.8° | 119.9° |
| O4' | C4' | C3' | H2 | 122.4° | 120.2° |
| O4' | C4' | C5' | H2 | 121.5° | 120.2° |
| O4' | C4' | C3' | C2' | 166.1° | 176.9° |
| O4' | C4' | C5' | C6' | 70.6° | 62.5° |
| O4' | C4' | C5' | O5' | 169.8° | 177.5° |
| O4' | C4' | C5' | H1 | 49.8° | 57.5° |
| O4' | C4' | C3' | H3 | 49.5° | 57.0° |
| C3' | C4' | C5' | H2 | 121.8° | 119.9° |
| C4' | C3' | C2' | H3 | 116.6° | 119.9° |
| C3' | C4' | C5' | C6' | 172.8° | 177.6° |
| C3' | C4' | C5' | O5' | 53.2° | 57.6° |
| C4' | C3' | C2' | C1' | 54.1° | 57.0° |
| C4' | C3' | C2' | O1 | 68.5° | 62.9° |
| C3' | C4' | C5' | H1 | 66.8° | 62.4° |
| C4' | C3' | C2' | H4 | 173.1° | 176.9° |
| C3' | C4' | O4' | H9 | 180.0° | 60.0° |
| C4' | C3' | O3' | H10 | 180.0° | 180.0° |
| C5' | C4' | C3' | C2' | 50.3° | 57.0° |
| C4' | C5' | C6' | O6' | 66.3° | 175.0° |
| C4' | C5' | C6' | O5' | 121.3° | 120.0° |
| C4' | C5' | C6' | H1 | 120.3° | 120.0° |
| C4' | C5' | O5' | H1 | 119.2° | 119.9° |
| C4' | C5' | O5' | C1' | 63.7° | 61.1° |
| C5' | C4' | C3' | H3 | 66.3° | 62.9° |
| C4' | C5' | C6' | H6 | 53.7° | 55.0° |
| C4' | C5' | C6' | H7 | 173.6° | 65.0° |
| C5' | C4' | O4' | H9 | 61.8° | 179.7° |
| C3' | C2' | C1' | O1 | 125.0° | 119.9° |
| C3' | C2' | C1' | H4 | 119.1° | 119.9° |
| C3' | C2' | C1' | O5' | 60.9° | 57.6° |
| C3' | C2' | C1' | C7 | 178.8° | 177.6° |
| C3' | C2' | O1 | H4 | 120.2° | 120.2° |
| C2' | C3' | C4' | H2 | 71.5° | 62.9° |
| C3' | C2' | C1' | H5 | 59.6° | 62.4° |
| C2' | C3' | O3' | H10 | 54.2° | 60.5° |
| C3' | C2' | O1 | H13 | 180.0° | 180.0° |
| O6' | C6' | C5' | H6 | 120.0° | 120.0° |
| O6' | C6' | C5' | H7 | 120.0° | 120.0° |
| O6' | C6' | C5' | O5' | 54.9° | 65.0° |
| O6' | C6' | C5' | H1 | 173.4° | 55.1° |
| O6' | C6' | H6 | H7 | 119.9° | 120.0° |
| C6' | C5' | O5' | H1 | 117.8° | 120.0° |
| C6' | C5' | O5' | C1' | 173.4° | 178.9° |
| C6' | C5' | C4' | H2 | 50.9° | 57.8° |
| C5' | C6' | H6 | H7 | 119.9° | 120.0° |
| C5' | C6' | O6' | H8 | 180.0° | 180.0° |
| C5' | O5' | C1' | C2' | 67.3° | 61.1° |
| C5' | O5' | C1' | C7 | 172.1° | 178.9° |
| O5' | C5' | C4' | H2 | 68.7° | 62.3° |
| C5' | O5' | C1' | H5 | 52.2° | 58.9° |
| O5' | C5' | C6' | H6 | 174.9° | 175.0° |
| O5' | C5' | C6' | H7 | 65.1° | 55.0° |
| C2' | C1' | O5' | C7 | 120.5° | 120.0° |
| C2' | C1' | O5' | H5 | 119.5° | 120.0° |
| C2' | C1' | C7 | H5 | 121.4° | 120.0° |
| C2' | C1' | C7 | N1 | 66.7° | 65.0° |
| C2' | C1' | C7 | O7 | 114.3° | 115.0° |
| C1' | C2' | O1 | H4 | 117.8° | 120.2° |
| C1' | C2' | C3' | H3 | 62.5° | 62.9° |
| C1' | C2' | O1 | H13 | 58.0° | 60.3° |
| O5' | C1' | C7 | H5 | 120.7° | 120.0° |
| O5' | C1' | C7 | N1 | 175.3° | 175.0° |
| O5' | C1' | C7 | O7 | 3.7° | 4.9° |
| O5' | C1' | C2' | O1 | 64.2° | 62.3° |
| C1' | O5' | C5' | H1 | 55.5° | 58.8° |
| O5' | C1' | C2' | H4 | 180.0° | 177.5° |
| C1' | C7 | N1 | O7 | 179.0° | 179.9° |
| C7 | C1' | C2' | O1 | 53.7° | 57.7° |
| C7 | C1' | C2' | H4 | 62.1° | 62.5° |
| C1' | C7 | N1 | H11 | 179.0° | 0.1° |
| C1' | C7 | N1 | H12 | 1.0° | 180.0° |
| N1 | C7 | C1' | H5 | 54.7° | 55.0° |
| C7 | N1 | H11 | H12 | 180.0° | 180.0° |
| O7 | C7 | C1' | H5 | 124.3° | 124.9° |
| O7 | C7 | N1 | H11 | 0.0° | 180.0° |
| O7 | C7 | N1 | H12 | 180.0° | 0.0° |
| O1 | C2' | C3' | H3 | 174.9° | 177.2° |
| O1 | C2' | C1' | H5 | 175.4° | 177.7° |
| H1 | C5' | C4' | H2 | 171.3° | 177.8° |
| H1 | C5' | C6' | H6 | 66.6° | 64.9° |
| H1 | C5' | C6' | H7 | 53.4° | 175.1° |
| H2 | C4' | C3' | H3 | 171.9° | 177.2° |
| H2 | C4' | O4' | H9 | 58.6° | 60.2° |
| H3 | C3' | C2' | H4 | 56.6° | 57.0° |
| H3 | C3' | O3' | H10 | 63.3° | 59.7° |
| H4 | C2' | C1' | H5 | 59.5° | 57.5° |
| H4 | C2' | O1 | H13 | 59.8° | 59.8° |
| H6 | C6' | O6' | H8 | 60.0° | 60.0° |
| H7 | C6' | O6' | H8 | 60.0° | 60.0° |
