VPL
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O4' | C4' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.53Å | 1.53Å | |
| C3' | C2' | sing | 1.53Å | 1.53Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C2' | C1' | sing | 1.53Å | 1.53Å | |
| C5' | C6' | sing | 1.53Å | 1.52Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C6' | O6' | sing | 1.43Å | 1.44Å | |
| O5' | C1' | sing | 1.43Å | 1.43Å | |
| C1' | C7 | sing | 1.51Å | 1.51Å | |
| C7 | N1 | sing | 1.35Å | 1.45Å | |
| C7 | O7 | doub | 1.21Å | 1.21Å | |
| C5' | H1 | sing | 1.09Å | 1.10Å | |
| C4' | H2 | sing | 1.09Å | 1.10Å | |
| C3' | H3 | sing | 1.09Å | 1.10Å | |
| C2' | H4 | sing | 1.09Å | 1.10Å | |
| C2' | H5 | sing | 1.09Å | 1.10Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C6' | H7 | sing | 1.09Å | 1.10Å | |
| C6' | H8 | sing | 1.09Å | 1.10Å | |
| O6' | H9 | sing | 0.97Å | 0.95Å | |
| O4' | H10 | sing | 0.97Å | 0.95Å | |
| O3' | H11 | sing | 0.97Å | 0.95Å | |
| N1 | H12 | sing | 0.97Å | 1.00Å | |
| N1 | H13 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 111.0° | 109.5° |
| O3' | C3' | C2' | 108.9° | 109.6° |
| O3' | C3' | H3 | 109.3° | 109.6° |
| C3' | O3' | H11 | 109.5° | 113.9° |
| O4' | C4' | C3' | 106.5° | 109.6° |
| O4' | C4' | C5' | 111.9° | 109.5° |
| O4' | C4' | H2 | 110.9° | 109.5° |
| C4' | O4' | H10 | 109.5° | 114.0° |
| C4' | C3' | C2' | 112.0° | 109.0° |
| C3' | C4' | C5' | 108.9° | 109.2° |
| C3' | C4' | H2 | 109.4° | 109.5° |
| C4' | C3' | H3 | 107.8° | 109.6° |
| C3' | C2' | C1' | 108.4° | 109.2° |
| C2' | C3' | H3 | 107.7° | 109.5° |
| C3' | C2' | H4 | 109.7° | 109.5° |
| C3' | C2' | H5 | 109.7° | 109.5° |
| C4' | C5' | C6' | 114.7° | 109.5° |
| C4' | C5' | O5' | 108.3° | 109.4° |
| C4' | C5' | H1 | 108.4° | 109.5° |
| C5' | C4' | H2 | 109.2° | 109.5° |
| C2' | C1' | O5' | 108.6° | 109.3° |
| C2' | C1' | C7 | 113.1° | 109.5° |
| C1' | C2' | H4 | 109.8° | 109.6° |
| C1' | C2' | H5 | 109.7° | 109.5° |
| C2' | C1' | H6 | 108.5° | 109.5° |
| C6' | C5' | O5' | 107.0° | 109.5° |
| C5' | C6' | O6' | 109.0° | 109.5° |
| C6' | C5' | H1 | 108.7° | 109.5° |
| C5' | C6' | H7 | 109.6° | 109.5° |
| C5' | C6' | H8 | 109.6° | 109.5° |
| C5' | O5' | C1' | 112.0° | 114.1° |
| O5' | C5' | H1 | 109.8° | 109.5° |
| O6' | C6' | H7 | 109.6° | 109.5° |
| O6' | C6' | H8 | 109.6° | 109.5° |
| C6' | O6' | H9 | 109.5° | 114.0° |
| O5' | C1' | C7 | 107.9° | 109.5° |
| O5' | C1' | H6 | 109.9° | 109.5° |
| C1' | C7 | N1 | 116.1° | 119.9° |
| C1' | C7 | O7 | 124.7° | 120.0° |
| C7 | C1' | H6 | 108.8° | 109.5° |
| N1 | C7 | O7 | 119.2° | 120.0° |
| C7 | N1 | H12 | 120.0° | 120.0° |
| C7 | N1 | H13 | 120.0° | 120.0° |
| H4 | C2' | H5 | 109.5° | 109.6° |
| H7 | C6' | H8 | 109.5° | 109.5° |
| H12 | N1 | H13 | 120.1° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 54.0° | 56.9° |
| O3' | C3' | C4' | C2' | 122.0° | 119.8° |
| O3' | C3' | C4' | H3 | 119.7° | 120.3° |
| O3' | C3' | C2' | H3 | 118.4° | 120.3° |
| O3' | C3' | C4' | C5' | 174.9° | 176.8° |
| O3' | C3' | C2' | C1' | 176.6° | 176.8° |
| O3' | C3' | C4' | H2 | 65.8° | 63.3° |
| O3' | C3' | C2' | H4 | 56.7° | 56.9° |
| O3' | C3' | C2' | H5 | 63.6° | 63.3° |
| O4' | C4' | C3' | C5' | 120.9° | 120.0° |
| O4' | C4' | C3' | H2 | 119.9° | 120.2° |
| O4' | C4' | C3' | C2' | 67.9° | 63.0° |
| O4' | C4' | C5' | H2 | 123.1° | 120.1° |
| O4' | C4' | C5' | C6' | 58.8° | 57.6° |
| O4' | C4' | C5' | O5' | 60.5° | 62.4° |
| O4' | C4' | C5' | H1 | 179.5° | 177.6° |
| O4' | C4' | C3' | H3 | 173.7° | 177.2° |
| C4' | C3' | C2' | H3 | 118.4° | 119.9° |
| C3' | C4' | C5' | H2 | 119.4° | 119.9° |
| C4' | C3' | C2' | C1' | 53.4° | 57.0° |
| C3' | C4' | C5' | C6' | 176.3° | 177.6° |
| C3' | C4' | C5' | O5' | 57.0° | 57.6° |
| C3' | C4' | C5' | H1 | 62.1° | 62.4° |
| C4' | C3' | C2' | H4 | 66.5° | 62.9° |
| C4' | C3' | C2' | H5 | 173.2° | 176.9° |
| C3' | C4' | O4' | H10 | 180.0° | 60.3° |
| C4' | C3' | O3' | H11 | 180.0° | 180.0° |
| C2' | C3' | C4' | C5' | 52.9° | 57.0° |
| C3' | C2' | C1' | H4 | 119.8° | 119.9° |
| C3' | C2' | C1' | H5 | 119.8° | 119.9° |
| C3' | C2' | C1' | O5' | 58.2° | 57.6° |
| C3' | C2' | C1' | C7 | 177.9° | 177.6° |
| C2' | C3' | C4' | H2 | 172.2° | 176.9° |
| C3' | C2' | H4 | H5 | 120.5° | 120.1° |
| C3' | C2' | C1' | H6 | 61.2° | 62.3° |
| C2' | C3' | O3' | H11 | 56.2° | 60.5° |
| C4' | C5' | C6' | O5' | 120.1° | 119.9° |
| C4' | C5' | C6' | H1 | 121.4° | 120.0° |
| C4' | C5' | O5' | H1 | 118.1° | 120.0° |
| C4' | C5' | C6' | O6' | 164.7° | 175.1° |
| C4' | C5' | O5' | C1' | 66.2° | 61.2° |
| C5' | C4' | C3' | H3 | 65.4° | 62.9° |
| C4' | C5' | C6' | H7 | 44.8° | 55.1° |
| C4' | C5' | C6' | H8 | 75.4° | 65.0° |
| C5' | C4' | O4' | H10 | 61.1° | 179.9° |
| C2' | C1' | O5' | C5' | 67.2° | 61.2° |
| C2' | C1' | O5' | C7 | 122.9° | 119.9° |
| C2' | C1' | O5' | H6 | 118.5° | 120.0° |
| C2' | C1' | C7 | H6 | 120.6° | 120.1° |
| C2' | C1' | C7 | N1 | 67.1° | 65.1° |
| C2' | C1' | C7 | O7 | 111.9° | 115.3° |
| C1' | C2' | C3' | H3 | 65.0° | 62.8° |
| C1' | C2' | H4 | H5 | 120.5° | 120.1° |
| C6' | C5' | O5' | H1 | 117.8° | 120.0° |
| C5' | C6' | O6' | H7 | 119.9° | 120.0° |
| C5' | C6' | O6' | H8 | 119.9° | 120.0° |
| C6' | C5' | O5' | C1' | 169.7° | 178.8° |
| C6' | C5' | C4' | H2 | 64.3° | 62.5° |
| C5' | C6' | H7 | H8 | 120.2° | 120.0° |
| C5' | C6' | O6' | H9 | 180.0° | 180.0° |
| O5' | C5' | C6' | O6' | 75.3° | 65.0° |
| C5' | O5' | C1' | C7 | 169.9° | 178.9° |
| O5' | C5' | C4' | H2 | 176.3° | 177.5° |
| C5' | O5' | C1' | H6 | 51.3° | 58.8° |
| O5' | C5' | C6' | H7 | 164.8° | 175.0° |
| O5' | C5' | C6' | H8 | 44.7° | 55.0° |
| O6' | C6' | C5' | H1 | 43.2° | 55.0° |
| O6' | C6' | H7 | H8 | 120.2° | 120.0° |
| O5' | C1' | C7 | H6 | 119.3° | 120.1° |
| O5' | C1' | C7 | N1 | 172.8° | 175.1° |
| O5' | C1' | C7 | O7 | 8.2° | 4.6° |
| C1' | O5' | C5' | H1 | 51.9° | 58.8° |
| O5' | C1' | C2' | H4 | 61.7° | 62.3° |
| O5' | C1' | C2' | H5 | 178.0° | 177.5° |
| C1' | C7 | N1 | O7 | 179.1° | 179.7° |
| C7 | C1' | C2' | H4 | 58.1° | 57.6° |
| C7 | C1' | C2' | H5 | 62.2° | 62.5° |
| C1' | C7 | N1 | H12 | 179.1° | 179.7° |
| C1' | C7 | N1 | H13 | 1.0° | 0.3° |
| N1 | C7 | C1' | H6 | 53.5° | 55.0° |
| C7 | N1 | H12 | H13 | 180.0° | 180.0° |
| O7 | C7 | C1' | H6 | 127.5° | 124.6° |
| O7 | C7 | N1 | H12 | 0.0° | 0.0° |
| O7 | C7 | N1 | H13 | 180.0° | 180.0° |
| H1 | C5' | C4' | H2 | 57.3° | 57.5° |
| H1 | C5' | C6' | H7 | 76.7° | 65.0° |
| H1 | C5' | C6' | H8 | 163.2° | 175.0° |
| H2 | C4' | C3' | H3 | 53.8° | 57.0° |
| H2 | C4' | O4' | H10 | 61.1° | 59.8° |
| H3 | C3' | C2' | H4 | 175.1° | 177.2° |
| H3 | C3' | C2' | H5 | 54.8° | 57.0° |
| H3 | C3' | O3' | H11 | 61.2° | 59.7° |
| H4 | C2' | C1' | H6 | 178.9° | 177.7° |
| H5 | C2' | C1' | H6 | 58.6° | 57.6° |
| H7 | C6' | O6' | H9 | 60.1° | 60.0° |
| H8 | C6' | O6' | H9 | 60.1° | 60.0° |
