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VPK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CC1sing1.53Å1.53Å
C4C5doub1.38Å1.34ÅAromatic
C4C3sing1.39Å1.37ÅAromatic
OC1sing1.45Å1.42Å
OC2sing1.35Å1.33Å
NC3sing1.40Å1.39Å
NC2sing1.35Å1.36Å
C5C6sing1.38Å1.38ÅAromatic
C3C7doub1.39Å1.37ÅAromatic
C2O1doub1.22Å1.21Å
C6N1doub1.32Å1.33ÅAromatic
C7N1sing1.32Å1.32ÅAromatic
C7H1sing1.08Å1.08Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C5H4sing1.08Å1.08Å
C6H5sing1.08Å1.08Å
C4H6sing1.08Å1.08Å
CH7sing1.09Å1.10Å
CH8sing1.09Å1.10Å
CH9sing1.09Å1.10Å
NH10sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CC1O106.1°109.5°
CC1H2110.3°109.5°
CC1H3110.3°109.5°
C1CH7109.5°109.5°
C1CH8109.5°109.4°
C1CH9109.5°109.5°
C5C4C3119.8°118.4°
C4C5C6117.1°119.2°
C4C5H4121.5°120.4°
C5C4H6120.1°120.8°
C4C3N115.8°120.5°
C4C3C7119.6°119.0°
C3C4H6120.1°120.8°
C1OC2117.4°117.0°
OC1H2110.3°109.5°
OC1H3110.3°109.5°
OC2N106.3°120.0°
OC2O1122.5°120.0°
C3NC2127.7°120.0°
NC3C7124.6°120.5°
C3NH10116.1°120.1°
NC2O1131.2°120.0°
C2NH10116.1°120.0°
C5C6N1124.1°120.9°
C6C5H4121.4°120.4°
C5C6H5117.9°119.5°
C3C7N1122.1°120.7°
C3C7H1119.0°119.7°
C6N1C7117.3°121.8°
N1C6H5117.9°119.6°
N1C7H1119.0°119.7°
H2C1H3109.5°109.5°
H7CH8109.4°109.4°
H7CH9109.5°109.5°
H8CH9109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CC1OH2119.5°120.0°
CC1OH3119.4°120.0°
CC1OC2164.7°180.0°
CC1H2H3121.6°120.0°
C1CH7H8120.0°120.0°
C1CH7H9120.0°120.1°
C1CH8H9120.0°120.0°
C5C4C3H6180.0°179.9°
C5C4C3N177.4°180.0°
C4C5C6H4180.0°179.9°
C5C4C3C71.2°0.0°
C4C5C6N10.4°0.1°
C4C5C6H5179.6°180.0°
C4C3NC7178.5°179.9°
C4C3NC2135.8°32.7°
C3C4C5C61.2°0.0°
C4C3C7N10.3°0.1°
C4C3C7H1179.7°180.0°
C3C4C5H4178.8°179.9°
C4C3NH1044.3°147.3°
C1OC2N178.9°180.0°
C1OC2O10.9°0.0°
OC1H2H3121.6°120.0°
OC1CH7180.0°59.9°
OC1CH860.0°60.0°
OC1CH960.0°179.9°
OC2NC3177.4°174.7°
OC2NO1179.7°180.0°
C2OC1H275.8°60.0°
C2OC1H345.3°60.0°
OC2NH102.7°5.3°
C3NC2H10180.0°180.0°
C3NC2O12.3°5.3°
NC3C7N1178.2°180.0°
NC3C7H11.8°0.1°
NC3C4H62.6°0.0°
C2NC3C745.7°147.4°
C5C6N1H5180.0°179.9°
C5C6N1C70.5°0.0°
C6C5C4H6178.8°180.0°
C3C7N1C60.5°0.0°
C3C7N1H1180.0°179.9°
C7C3C4H6178.8°179.9°
C7C3NH10134.2°32.6°
O1C2NH10177.7°174.7°
C6N1C7H1179.5°179.9°
N1C6C5H4179.6°180.0°
C7N1C6H5179.5°180.0°
H2C1CH760.5°179.9°
H2C1CH859.5°60.0°
H2C1CH9179.4°60.0°
H3C1CH760.6°60.1°
H3C1CH8179.5°180.0°
H3C1CH959.5°60.0°
H4C5C6H50.4°0.1°
H4C5C4H61.2°0.1°
H7CH8H9120.0°120.0°

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PDB entries from 2024-07-10

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