VPH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O4' | C4' | sing | 1.43Å | 1.41Å | |
| C3' | C4' | sing | 1.53Å | 1.52Å | |
| C3' | C2' | sing | 1.53Å | 1.51Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C2' | C1' | sing | 1.53Å | 1.53Å | |
| C5' | C6' | sing | 1.53Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C6' | O6' | sing | 1.43Å | 1.42Å | |
| O5' | C1' | sing | 1.43Å | 1.43Å | |
| C1' | C7 | sing | 1.51Å | 1.52Å | |
| C7 | O7 | doub | 1.21Å | 1.20Å | |
| C7 | O8 | sing | 1.34Å | 1.32Å | |
| O8 | C9 | sing | 1.45Å | 1.45Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C6' | H61' | sing | 1.09Å | 1.10Å | |
| C6' | H62' | sing | 1.09Å | 1.10Å | |
| O6' | HO6' | sing | 0.97Å | 0.95Å | |
| O4' | HO4' | sing | 0.97Å | 0.95Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C9 | H12 | sing | 1.09Å | 1.10Å | |
| C9 | H13 | sing | 1.09Å | 1.10Å | |
| C9 | H14 | sing | 1.09Å | 1.10Å | |
| C2' | S1 | sing | 1.81Å | 55.18Å | |
| S1 | HS1' | sing | 1.35Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 110.9° | 109.5° |
| O3' | C3' | C2' | 109.4° | 109.6° |
| O3' | C3' | H3' | 109.6° | 109.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| O4' | C4' | C3' | 109.6° | 109.6° |
| O4' | C4' | C5' | 109.4° | 109.5° |
| O4' | C4' | H4' | 110.5° | 109.6° |
| C4' | O4' | HO4' | 109.5° | 114.0° |
| C4' | C3' | C2' | 110.2° | 109.0° |
| C3' | C4' | C5' | 109.1° | 109.2° |
| C3' | C4' | H4' | 109.1° | 109.5° |
| C4' | C3' | H3' | 108.3° | 109.5° |
| C3' | C2' | C1' | 110.6° | 109.2° |
| C2' | C3' | H3' | 108.4° | 109.6° |
| C3' | C2' | H2' | 106.1° | 109.5° |
| C3' | C2' | S1 | 84.4° | 109.5° |
| C4' | C5' | C6' | 113.8° | 109.5° |
| C4' | C5' | O5' | 110.0° | 109.4° |
| C4' | C5' | H5' | 108.0° | 109.5° |
| C5' | C4' | H4' | 109.1° | 109.5° |
| C2' | C1' | O5' | 109.1° | 109.4° |
| C2' | C1' | C7 | 112.2° | 109.5° |
| C1' | C2' | H2' | 106.0° | 109.6° |
| C2' | C1' | H1' | 107.7° | 109.5° |
| C1' | C2' | S1 | 152.8° | 109.5° |
| C6' | C5' | O5' | 107.8° | 109.4° |
| C5' | C6' | O6' | 109.5° | 109.5° |
| C6' | C5' | H5' | 108.2° | 109.5° |
| C5' | C6' | H61' | 109.5° | 109.4° |
| C5' | C6' | H62' | 109.5° | 109.5° |
| C5' | O5' | C1' | 111.7° | 114.1° |
| O5' | C5' | H5' | 109.1° | 109.5° |
| O6' | C6' | H61' | 109.5° | 109.5° |
| O6' | C6' | H62' | 109.5° | 109.5° |
| C6' | O6' | HO6' | 109.5° | 114.0° |
| O5' | C1' | C7 | 111.0° | 109.4° |
| O5' | C1' | H1' | 109.0° | 109.5° |
| C1' | C7 | O7 | 124.1° | 120.0° |
| C1' | C7 | O8 | 111.0° | 120.0° |
| C7 | C1' | H1' | 107.8° | 109.4° |
| O7 | C7 | O8 | 124.9° | 120.0° |
| C7 | O8 | C9 | 115.8° | 117.0° |
| O8 | C9 | H12 | 109.5° | 109.5° |
| O8 | C9 | H13 | 109.5° | 109.4° |
| O8 | C9 | H14 | 109.5° | 109.4° |
| H2' | C2' | S1 | 90.4° | 109.6° |
| H61' | C6' | H62' | 109.5° | 109.4° |
| H12 | C9 | H13 | 109.5° | 109.5° |
| H12 | C9 | H14 | 109.4° | 109.5° |
| H13 | C9 | H14 | 109.4° | 109.5° |
| C2' | S1 | HS1' | 90.0° | 103.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 55.3° | 56.9° |
| O3' | C3' | C4' | C2' | 121.3° | 119.9° |
| O3' | C3' | C4' | H3' | 120.3° | 120.3° |
| O3' | C3' | C2' | H3' | 119.5° | 120.3° |
| O3' | C3' | C4' | C5' | 175.1° | 176.9° |
| O3' | C3' | C2' | C1' | 175.8° | 176.9° |
| O3' | C3' | C4' | H4' | 65.8° | 63.3° |
| O3' | C3' | C2' | H2' | 61.3° | 56.9° |
| O3' | C3' | C2' | S1 | 27.6° | 63.2° |
| O4' | C4' | C3' | C5' | 119.8° | 120.0° |
| O4' | C4' | C3' | H4' | 121.1° | 120.2° |
| O4' | C4' | C3' | C2' | 66.0° | 63.0° |
| O4' | C4' | C5' | H4' | 121.0° | 120.2° |
| O4' | C4' | C5' | C6' | 59.4° | 57.6° |
| O4' | C4' | C5' | O5' | 61.6° | 62.3° |
| O4' | C4' | C5' | H5' | 179.4° | 177.7° |
| O4' | C4' | C3' | H3' | 175.6° | 177.2° |
| C4' | C3' | C2' | H3' | 118.3° | 119.8° |
| C3' | C4' | C5' | H4' | 119.1° | 119.9° |
| C4' | C3' | C2' | C1' | 53.6° | 57.0° |
| C3' | C4' | C5' | C6' | 179.3° | 177.6° |
| C3' | C4' | C5' | O5' | 58.3° | 57.6° |
| C3' | C4' | C5' | H5' | 60.6° | 62.4° |
| C4' | C3' | C2' | H2' | 60.9° | 63.0° |
| C3' | C4' | O4' | HO4' | 180.0° | 60.3° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | S1 | 149.8° | 176.9° |
| C2' | C3' | C4' | C5' | 53.8° | 57.0° |
| C3' | C2' | C1' | H2' | 114.6° | 119.9° |
| C3' | C2' | C1' | S1 | 120.3° | 119.9° |
| C3' | C2' | C1' | O5' | 56.9° | 57.7° |
| C3' | C2' | C1' | C7 | 179.6° | 177.6° |
| C2' | C3' | C4' | H4' | 172.9° | 176.9° |
| C3' | C2' | H2' | S1 | 84.3° | 120.1° |
| C3' | C2' | C1' | H1' | 61.2° | 62.4° |
| C2' | C3' | O3' | HO3' | 58.2° | 60.4° |
| C3' | C2' | S1 | HS1' | 90.0° | 180.0° |
| C4' | C5' | C6' | O5' | 122.2° | 119.9° |
| C4' | C5' | C6' | H5' | 120.0° | 120.1° |
| C4' | C5' | O5' | H5' | 118.2° | 120.0° |
| C4' | C5' | C6' | O6' | 159.5° | 175.1° |
| C4' | C5' | O5' | C1' | 64.1° | 61.2° |
| C5' | C4' | C3' | H3' | 64.6° | 62.9° |
| C4' | C5' | C6' | H61' | 39.4° | 55.1° |
| C4' | C5' | C6' | H62' | 80.5° | 64.9° |
| C5' | C4' | O4' | HO4' | 60.3° | 180.0° |
| C2' | C1' | O5' | C5' | 62.5° | 61.2° |
| C2' | C1' | O5' | C7 | 124.1° | 120.0° |
| C2' | C1' | O5' | H1' | 117.3° | 120.1° |
| C2' | C1' | C7 | H1' | 118.3° | 120.0° |
| C2' | C1' | C7 | O7 | 66.3° | 115.0° |
| C2' | C1' | C7 | O8 | 113.5° | 65.0° |
| C1' | C2' | C3' | H3' | 64.7° | 62.8° |
| C1' | C2' | H2' | S1 | 158.0° | 120.2° |
| C1' | C2' | S1 | HS1' | 90.0° | 60.3° |
| C6' | C5' | O5' | H5' | 117.2° | 120.0° |
| C5' | C6' | O6' | H61' | 120.0° | 120.0° |
| C5' | C6' | O6' | H62' | 120.0° | 120.0° |
| C6' | C5' | O5' | C1' | 171.3° | 178.8° |
| C6' | C5' | C4' | H4' | 61.6° | 62.6° |
| C5' | C6' | H61' | H62' | 120.0° | 120.0° |
| C5' | C6' | O6' | HO6' | 180.0° | 180.0° |
| O5' | C5' | C6' | O6' | 78.3° | 65.0° |
| C5' | O5' | C1' | C7 | 173.3° | 178.9° |
| O5' | C5' | C4' | H4' | 177.4° | 177.5° |
| C5' | O5' | C1' | H1' | 54.8° | 58.9° |
| O5' | C5' | C6' | H61' | 161.7° | 175.0° |
| O5' | C5' | C6' | H62' | 41.7° | 55.1° |
| O6' | C6' | C5' | H5' | 39.5° | 55.0° |
| O6' | C6' | H61' | H62' | 120.0° | 120.0° |
| O5' | C1' | C7 | H1' | 119.3° | 120.0° |
| O5' | C1' | C7 | O7 | 171.3° | 5.0° |
| O5' | C1' | C7 | O8 | 8.8° | 175.1° |
| C1' | O5' | C5' | H5' | 54.1° | 58.9° |
| O5' | C1' | C2' | H2' | 57.7° | 62.2° |
| O5' | C1' | C2' | S1 | 177.2° | 177.5° |
| C1' | C7 | O7 | O8 | 179.9° | 180.0° |
| C1' | C7 | O8 | C9 | 144.8° | 180.0° |
| C7 | C1' | C2' | H2' | 65.7° | 57.7° |
| C7 | C1' | C2' | S1 | 59.3° | 62.5° |
| O7 | C7 | O8 | C9 | 35.1° | 0.0° |
| O7 | C7 | C1' | H1' | 52.0° | 125.0° |
| O8 | C7 | C1' | H1' | 128.1° | 55.0° |
| C7 | O8 | C9 | H12 | 180.0° | 180.0° |
| C7 | O8 | C9 | H13 | 60.0° | 60.0° |
| C7 | O8 | C9 | H14 | 60.0° | 60.0° |
| O8 | C9 | H12 | H13 | 120.0° | 120.0° |
| O8 | C9 | H12 | H14 | 120.0° | 120.0° |
| O8 | C9 | H13 | H14 | 120.0° | 120.0° |
| H5' | C5' | C4' | H4' | 58.4° | 57.5° |
| H5' | C5' | C6' | H61' | 80.5° | 65.0° |
| H5' | C5' | C6' | H62' | 159.5° | 175.0° |
| H4' | C4' | C3' | H3' | 54.5° | 57.0° |
| H4' | C4' | O4' | HO4' | 59.8° | 59.8° |
| H3' | C3' | C2' | H2' | 179.3° | 177.2° |
| H3' | C3' | O3' | HO3' | 60.5° | 59.8° |
| H3' | C3' | C2' | S1 | 91.9° | 57.1° |
| H2' | C2' | C1' | H1' | 175.9° | 177.7° |
| H2' | C2' | S1 | HS1' | 90.0° | 59.9° |
| H1' | C1' | C2' | S1 | 59.1° | 57.5° |
| H61' | C6' | O6' | HO6' | 60.0° | 60.0° |
| H62' | C6' | O6' | HO6' | 60.0° | 60.0° |
| H12 | C9 | H13 | H14 | 119.9° | 120.1° |
