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SummaryGeometryRelated PDB entries

VPG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O28P26doub1.48Å1.61Å
O27P26sing1.61Å1.48Å
P26O29sing1.61Å1.61Å
P26C25sing1.82Å1.79Å
O24C25sing1.43Å1.43Å
O24C23sing1.43Å1.41Å
O21C22sing1.44Å1.43Å
O21C20sing1.44Å1.44Å
C22C23sing1.53Å1.51Å
C22C30sing1.54Å1.52Å
O33C32sing1.43Å1.43Å
C20C32sing1.54Å1.55Å
C20N19sing1.47Å1.43Å
O31C30sing1.43Å1.44Å
C32C30sing1.54Å1.55Å
N19C15sing1.36Å1.37ÅAromatic
N19N18sing1.40Å1.38ÅAromatic
N14C15doub1.33Å1.34ÅAromatic
N14C12sing1.32Å1.33ÅAromatic
CL13C12sing1.74Å1.75Å
C15C16sing1.41Å1.42ÅAromatic
C12N11doub1.32Å1.32ÅAromatic
N18C17doub1.30Å1.29ÅAromatic
C16C17sing1.41Å1.41ÅAromatic
C16C10doub1.41Å1.42ÅAromatic
N11C10sing1.33Å1.33ÅAromatic
C10N9sing1.38Å1.39Å
CL1C2sing1.74Å1.74Å
N9C8sing1.47Å1.47Å
C8C7sing1.51Å1.51Å
C2C7doub1.38Å1.40ÅAromatic
C2C3sing1.38Å1.39ÅAromatic
C7C6sing1.38Å1.40ÅAromatic
C3C4doub1.38Å1.39ÅAromatic
C6C5doub1.38Å1.39ÅAromatic
C4C5sing1.38Å1.39ÅAromatic
C3H1sing1.08Å1.08Å
C4H2sing1.08Å1.08Å
C5H3sing1.08Å1.08Å
C6H4sing1.08Å1.08Å
C8H5sing1.09Å1.10Å
C8H6sing1.09Å1.10Å
C17H7sing1.08Å1.08Å
C23H8sing1.09Å1.10Å
C23H9sing1.09Å1.10Å
O29H10sing0.97Å0.95Å
C30H11sing1.09Å1.10Å
C32H12sing1.09Å1.10Å
N9H13sing0.97Å1.00Å
C20H14sing1.09Å1.10Å
C22H15sing1.09Å1.10Å
C25H16sing1.09Å1.10Å
C25H17sing1.09Å1.10Å
O27H18sing0.97Å0.95Å
O31H19sing0.97Å0.95Å
O33H20sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O28P26O27109.7°109.5°
O28P26O29114.2°109.4°
O28P26C25102.8°109.4°
O27P26O29106.8°109.5°
O27P26C25112.1°109.5°
P26O27H18109.5°113.9°
O29P26C25111.4°109.5°
P26O29H10109.5°114.0°
P26C25O24106.1°109.5°
P26C25H16110.3°109.5°
P26C25H17110.3°109.5°
C25O24C23110.2°114.0°
O24C25H16110.3°109.5°
O24C25H17110.3°109.5°
O24C23C22108.6°109.5°
O24C23H8109.7°109.5°
O24C23H9109.7°109.5°
C22O21C20109.1°105.3°
O21C22C23110.1°110.4°
O21C22C30107.8°104.8°
O21C22H15111.8°110.4°
O21C20C32107.9°104.8°
O21C20N19106.4°110.4°
O21C20H14111.9°110.5°
C23C22C30106.1°110.4°
C22C23H8109.7°109.5°
C22C23H9109.7°109.4°
C23C22H15110.6°110.3°
C22C30O31109.4°110.6°
C22C30C32102.3°104.1°
C22C30H11110.2°110.5°
C30C22H15110.3°110.5°
O33C32C20109.8°110.6°
O33C32C30112.2°110.5°
O33C32H12111.4°110.4°
C32O33H20109.5°114.1°
C32C20N19108.1°110.4°
C20C32C30103.8°104.1°
C20C32H12109.8°110.5°
C32C20H14110.3°110.4°
C20N19C15129.2°125.9°
C20N19N18121.6°125.9°
N19C20H14112.0°110.3°
O31C30C32113.3°110.5°
O31C30H11111.5°110.4°
C30O31H19109.5°114.0°
C32C30H11109.8°110.5°
C30C32H12109.7°110.5°
C15N19N18109.3°108.3°
N19C15N14135.2°134.6°
N19C15C16105.7°106.5°
N19N18C17109.6°109.7°
C15N14C12120.9°120.7°
N14C15C16119.1°118.8°
N14C12CL13121.5°118.7°
N14C12N11121.3°122.7°
CL13C12N11117.2°118.7°
C15C16C17106.1°107.0°
C15C16C10118.1°118.3°
C12N11C10123.0°121.1°
N18C17C16109.3°108.5°
N18C17H7125.4°125.7°
C17C16C10135.8°134.7°
C16C17H7125.3°125.8°
C16C10N11117.6°118.4°
C16C10N9125.3°120.7°
N11C10N9117.2°120.8°
C10N9C8124.8°120.0°
C10N9H13105.5°120.1°
CL1C2C7122.2°120.0°
CL1C2C3118.2°120.0°
N9C8C7110.3°109.5°
N9C8H5109.3°109.5°
N9C8H6109.2°109.5°
C8N9H13105.5°119.9°
C8C7C2122.3°120.0°
C8C7C6118.1°120.0°
C7C8H5109.3°109.5°
C7C8H6109.3°109.4°
C7C2C3119.7°120.0°
C2C7C6119.7°120.0°
C2C3C4120.3°120.0°
C2C3H1119.9°120.0°
C7C6C5120.3°120.0°
C7C6H4119.9°120.0°
C3C4C5120.3°120.0°
C4C3H1119.9°120.0°
C3C4H2119.8°120.0°
C6C5C4119.8°120.0°
C6C5H3120.1°120.0°
C5C6H4119.9°120.0°
C5C4H2119.8°120.0°
C4C5H3120.1°120.0°
H5C8H6109.5°109.4°
H8C23H9109.5°109.6°
H16C25H17109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O28P26O27O29124.2°120.0°
O28P26O27C25113.5°120.0°
O28P26O29C25115.9°119.9°
O28P26C25O2489.7°60.0°
O28P26O29H100.0°179.9°
O28P26C25H16150.9°180.0°
O28P26C25H1729.8°60.0°
O28P26O27H180.0°60.0°
O27P26O29C25122.7°120.0°
O27P26C25O2428.0°180.0°
O27P26O29H10121.4°60.0°
O27P26C25H1691.4°60.0°
O27P26C25H17147.5°60.0°
O29P26C25O24147.7°60.0°
O29P26C25H1628.2°60.1°
O29P26C25H1792.9°180.0°
O29P26O27H18124.2°60.0°
P26C25O24H16119.5°120.1°
P26C25O24H17119.5°120.0°
P26C25O24C23144.1°75.0°
C25P26O29H10115.9°60.0°
P26C25H16H17121.6°120.0°
C25P26O27H18113.5°180.0°
C25O24C23C22179.7°180.0°
C25O24C23H860.4°60.1°
C25O24C23H959.8°60.0°
O24C25H16H17121.6°120.0°
O24C23C22O2172.0°66.4°
O24C23C22H8119.9°120.0°
O24C23C22H9119.9°119.9°
O24C23C22C30171.7°178.2°
O24C23H8H9120.4°120.0°
O24C23C22H1552.0°55.8°
C23O24C25H1624.6°164.9°
C23O24C25H1796.5°45.0°
O21C22C23C30116.4°115.4°
O21C22C23H15124.0°122.2°
O21C22C30H15122.3°118.9°
C22O21C20C326.2°40.5°
C22O21C20N19122.0°159.3°
O21C22C30O31151.0°142.7°
O21C22C30C3230.6°24.0°
O21C22C23H847.9°173.6°
O21C22C23H9168.2°53.5°
O21C22C30H1186.1°94.7°
C22O21C20H14115.4°78.4°
C20O21C22C23138.8°159.4°
C20O21C22C3023.5°40.5°
O21C20C32O33107.1°142.7°
O21C20C32N19114.7°118.8°
O21C20C32H14122.5°119.0°
O21C20N19H14122.5°122.4°
O21C20C32C3013.0°24.0°
O21C20N19C15143.1°139.6°
O21C20N19N1837.2°39.9°
O21C20C32H12130.1°94.7°
C20O21C22H1597.9°78.5°
C23C22C30H15119.8°122.3°
C23C22C30O3191.1°98.4°
C23C22C30C32148.5°142.8°
C22C23H8H9120.4°120.0°
C23C22C30H1131.8°24.2°
C22C30C32O3392.9°118.8°
C22C30C32C2025.5°0.0°
C22C30O31C32113.5°114.7°
C22C30O31H11122.1°122.6°
C22C30C32H11117.0°118.6°
C30C22C23H868.5°58.2°
C30C22C23H951.8°61.9°
C22C30C32H12142.8°118.6°
C22C30O31H19180.0°178.0°
O33C32C20C30120.0°118.7°
O33C32C20H12122.8°122.7°
O33C32C20N19138.2°98.5°
O33C32C30O3124.8°0.0°
O33C32C30H12124.4°122.6°
O33C32C30H11150.1°122.6°
O33C32C20H1415.5°23.7°
C32C20N19H14121.8°122.2°
C20C32C30O31143.2°118.8°
C20C32C30H12117.2°118.6°
C32C20N19C15101.2°105.0°
C32C20N19N1878.5°75.5°
C20C32C30H1191.5°118.6°
C20C32O33H20180.0°176.1°
N19C20C32C30101.7°142.8°
C20N19C15N18179.8°179.6°
C20N19C15N140.2°0.4°
C20N19C15C16180.0°180.0°
C20N19N18C17179.8°180.0°
N19C20C32H1215.5°24.2°
O31C30C32H11125.3°122.6°
O31C30C32H1299.6°122.6°
O31C30C22H1528.7°23.8°
C30C32C20H14135.5°95.0°
C32C30C22H1591.7°94.9°
C32C30O31H1966.5°63.3°
C30C32O33H2065.2°61.4°
N19C15N14C16179.8°179.5°
N19C15N14C12179.3°179.6°
C15N19N18C170.5°0.4°
N19C15C16C170.0°0.3°
N19C15C16C10180.0°180.0°
C15N19C20H1420.6°17.2°
N18N19C15N14179.5°180.0°
N18N19C15C160.2°0.4°
N19N18C17C160.5°0.2°
N19N18C17H7179.5°179.7°
N18N19C20H14159.7°162.3°
C15N14C12CL13179.6°179.8°
C15N14C12N110.7°0.1°
N14C15C16C17179.9°180.0°
N14C15C16C100.2°0.3°
N14C12CL13N11179.7°179.7°
C12N14C15C160.5°0.1°
N14C12N11C100.2°0.3°
CL13C12N11C10180.0°180.0°
C15C16C17N180.3°0.1°
C15C16C17C10179.9°179.6°
C15C16C10N110.6°0.6°
C15C16C10N9179.6°180.0°
C15C16C17H7179.6°180.0°
C12N11C10C160.5°0.6°
C12N11C10N9179.5°180.0°
N18C17C16H7180.0°179.9°
N18C17C16C10179.7°179.7°
C17C16C10N11179.4°179.9°
C17C16C10N90.5°0.4°
C16C10N11N9179.1°179.5°
C16C10N9C813.4°180.0°
C10C16C17H70.3°0.4°
C16C10N9H13108.7°0.0°
N11C10N9C8167.7°0.5°
N11C10N9H1370.2°179.5°
C10N9C8H13122.1°180.0°
C10N9C8C7166.6°180.0°
C10N9C8H546.4°60.0°
C10N9C8H673.3°60.0°
CL1C2C7C80.1°0.3°
CL1C2C7C3179.2°179.7°
CL1C2C7C6179.9°179.8°
CL1C2C3C4179.8°179.7°
CL1C2C3H10.3°0.3°
N9C8C7H5120.1°120.0°
N9C8C7H6120.1°120.0°
N9C8C7C2107.2°80.0°
N9C8C7C672.9°99.9°
N9C8H5H6119.6°120.0°
C8C7C2C6180.0°179.9°
C8C7C2C3179.3°180.0°
C8C7C6C5179.8°180.0°
C8C7C6H40.2°0.0°
C7C8H5H6119.6°119.9°
C7C8N9H1371.3°0.0°
C7C2C3C41.0°0.0°
C2C7C6C50.2°0.1°
C7C2C3H1179.0°180.0°
C2C7C6H4179.8°179.9°
C2C7C8H513.0°160.0°
C2C7C8H6132.7°40.1°
C3C2C7C60.7°0.0°
C2C3C4H1180.0°180.0°
C2C3C4C50.8°0.0°
C2C3C4H2179.2°179.9°
C7C6C5H4180.0°180.0°
C7C6C5C40.0°0.1°
C7C6C5H3180.0°180.0°
C6C7C8H5167.0°20.1°
C6C7C8H647.2°140.0°
C3C4C5C60.2°0.0°
C3C4C5H2180.0°179.9°
C3C4C5H3179.8°180.0°
C6C5C4H3180.0°179.9°
C6C5C4H2179.8°180.0°
C5C4C3H1179.2°180.0°
C4C5C6H4180.0°179.9°
H1C3C4H20.8°0.1°
H2C4C5H30.2°0.1°
H3C5C6H40.0°0.0°
H5C8N9H13168.5°120.0°
H6C8N9H1348.8°120.0°
H8C23C22H15171.9°64.2°
H9C23C22H1567.8°175.7°
H11C30C32H1225.8°0.0°
H11C30C22H15151.6°146.4°
H11C30O31H1957.9°59.3°
H12C32C20H14107.3°146.4°
H12C32O33H2058.2°61.2°

225399

PDB entries from 2024-09-25

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