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VPA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4'C4'sing1.43Å1.42Å
O3'C3'sing1.43Å1.43Å
C3'C4'sing1.53Å1.52Å
C3'C2'sing1.53Å1.53Å
C4'C5'sing1.53Å1.52Å
C5'C6'sing1.53Å1.51Å
C5'O5'sing1.43Å1.43Å
C6'O6'sing1.43Å1.44Å
O2AC2Asing1.43Å1.43Å
O2'C2'sing1.43Å1.43Å
C2'C1'sing1.53Å1.54Å
O6'C1Asing1.43Å1.43Å
O5'C1'sing1.43Å1.45Å
C1AC2Asing1.53Å1.53Å
C1AO5Asing1.43Å1.45Å
C1'N1sing1.46Å1.48Å
C2AC3Asing1.53Å1.52Å
C3AO3Asing1.43Å1.42Å
C3AC4Asing1.53Å1.52Å
O5AC5Asing1.43Å1.44Å
C5AC4Asing1.53Å1.53Å
N1C1sing1.37Å1.32Å
N2C1doub1.29Å1.32Å
C4AO4Asing1.43Å1.43Å
C1C2sing1.51Å1.53Å
C8C7doub1.38Å1.39ÅAromatic
C8C3sing1.38Å1.40ÅAromatic
C2C3sing1.51Å1.55Å
C7C6sing1.38Å1.39ÅAromatic
C3C4doub1.38Å1.39ÅAromatic
C6C5doub1.38Å1.39ÅAromatic
C4C5sing1.38Å1.39ÅAromatic
C2H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
N2H3sing0.97Å1.00Å
C4H4sing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C8H7sing1.08Å1.08Å
C7H8sing1.08Å1.08Å
N1H9sing0.97Å1.00Å
C1'H10sing1.09Å1.10Å
C2'H11sing1.09Å1.10Å
O2'H12sing0.97Å0.95Å
C3'H13sing1.09Å1.10Å
O3'H14sing0.97Å0.95Å
C4'H15sing1.09Å1.10Å
O4'H16sing0.97Å0.95Å
C5'H17sing1.09Å1.10Å
C6'H18sing1.09Å1.10Å
C6'H19sing1.09Å1.10Å
C1AH20sing1.09Å1.10Å
C5AH21sing1.09Å1.10Å
C5AH22sing1.09Å1.10Å
C4AH23sing1.09Å1.10Å
O4AH24sing0.97Å0.95Å
C3AH25sing1.09Å1.10Å
O3AH26sing0.97Å0.95Å
C2AH27sing1.09Å1.10Å
O2AH28sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4'C4'C3'110.3°109.5°
O4'C4'C5'110.7°109.5°
O4'C4'H15109.8°109.6°
C4'O4'H16109.5°114.0°
O3'C3'C4'109.5°109.6°
O3'C3'C2'110.9°109.5°
O3'C3'H13110.3°109.6°
C3'O3'H14109.5°114.0°
C4'C3'C2'108.1°109.0°
C3'C4'C5'108.7°109.2°
C4'C3'H13109.1°109.6°
C3'C4'H15108.6°109.5°
C3'C2'O2'110.5°109.6°
C3'C2'C1'113.0°109.2°
C3'C2'H11107.7°109.5°
C2'C3'H13108.9°109.5°
C4'C5'C6'109.8°109.4°
C4'C5'O5'107.4°109.4°
C5'C4'H15108.6°109.5°
C4'C5'H17111.0°109.5°
C6'C5'O5'104.8°109.5°
C5'C6'O6'102.9°109.4°
C6'C5'H17111.1°109.5°
C5'C6'H18111.1°109.5°
C5'C6'H19111.1°109.5°
C5'O5'C1'118.3°114.1°
O5'C5'H17112.4°109.5°
C6'O6'C1A111.7°114.0°
O6'C6'H18111.1°109.4°
O6'C6'H19111.1°109.5°
O2AC2AC1A110.6°109.5°
O2AC2AC3A110.8°109.5°
O2AC2AH27109.6°109.6°
C2AO2AH28109.5°114.0°
O2'C2'C1'109.1°109.5°
O2'C2'H11108.9°109.5°
C2'O2'H12109.5°114.0°
C2'C1'O5'117.8°109.4°
C2'C1'N1105.5°109.5°
C2'C1'H10107.7°109.5°
C1'C2'H11107.5°109.5°
O6'C1AC2A108.1°109.5°
O6'C1AO5A108.3°109.4°
O6'C1AH20110.5°109.5°
O5'C1'N1108.1°109.5°
O5'C1'H10108.8°109.5°
C2AC1AO5A110.8°109.4°
C1AC2AC3A109.2°109.2°
C2AC1AH20109.0°109.5°
C1AC2AH27108.3°109.5°
C1AO5AC5A111.9°114.1°
O5AC1AH20110.1°109.5°
C1'N1C1121.5°120.0°
C1'N1H9119.2°120.0°
N1C1'H10108.5°109.5°
C2AC3AO3A110.2°109.6°
C2AC3AC4A108.3°109.1°
C2AC3AH25109.0°109.6°
C3AC2AH27108.4°109.5°
O3AC3AC4A110.0°109.6°
O3AC3AH25110.4°109.5°
C3AO3AH26109.5°114.0°
C3AC4AC5A108.6°109.2°
C3AC4AO4A110.2°109.6°
C3AC4AH23108.8°109.6°
C4AC3AH25108.9°109.5°
O5AC5AC4A109.3°109.4°
O5AC5AH21109.5°109.4°
O5AC5AH22109.5°109.5°
C5AC4AO4A110.4°109.5°
C4AC5AH21109.5°109.5°
C4AC5AH22109.5°109.5°
C5AC4AH23108.7°109.5°
N1C1N2119.4°120.0°
N1C1C2119.1°120.0°
C1N1H9119.3°120.0°
N2C1C2121.4°120.0°
C1N2H3112.0°120.1°
O4AC4AH23110.1°109.5°
C4AO4AH24109.5°114.0°
C1C2C3113.0°109.5°
C1C2H1108.6°109.5°
C1C2H2108.6°109.5°
C7C8C3120.6°120.0°
C8C7C6120.1°120.1°
C7C8H7119.7°120.0°
C8C7H8120.0°119.9°
C8C3C2122.7°120.0°
C8C3C4118.7°120.0°
C3C8H7119.7°120.0°
C2C3C4118.6°120.0°
C3C2H1108.6°109.5°
C3C2H2108.6°109.5°
C7C6C5119.7°120.0°
C7C6H6120.1°120.0°
C6C7H8119.9°120.0°
C3C4C5120.8°120.0°
C3C4H4119.6°120.0°
C6C5C4120.0°120.0°
C6C5H5120.0°120.0°
C5C6H6120.1°120.0°
C5C4H4119.6°120.0°
C4C5H5120.0°120.0°
H1C2H2109.5°109.5°
H18C6'H19109.5°109.5°
H21C5AH22109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4'C4'C3'O3'51.3°63.2°
O4'C4'C3'C5'121.6°119.9°
O4'C4'C3'H15120.4°120.2°
O4'C4'C3'C2'172.2°176.9°
O4'C4'C5'H15120.7°120.2°
O4'C4'C5'C6'57.0°62.5°
O4'C4'C5'O5'170.5°177.5°
O4'C4'C3'H1369.5°57.1°
O4'C4'C5'H1766.2°57.5°
O3'C3'C4'C2'120.9°119.9°
O3'C3'C4'H13120.8°120.3°
O3'C3'C2'H13121.5°120.2°
O3'C3'C4'C5'172.9°176.9°
O3'C3'C2'O2'72.6°63.2°
O3'C3'C2'C1'164.9°176.9°
O3'C3'C2'H1146.3°56.9°
O3'C3'C4'H1569.1°56.9°
C4'C3'C2'H13118.4°119.8°
C3'C4'C5'H15118.0°119.9°
C3'C4'C5'C6'178.3°177.6°
C3'C4'C5'O5'68.2°57.6°
C4'C3'C2'O2'167.4°176.9°
C4'C3'C2'C1'44.8°56.9°
C4'C3'C2'H1173.8°63.0°
C4'C3'O3'H14180.0°180.0°
C3'C4'O4'H16180.0°59.9°
C3'C4'C5'H1755.1°62.4°
C2'C3'C4'C5'66.2°57.0°
C3'C2'O2'C1'124.8°119.7°
C3'C2'O2'H11118.1°120.1°
C3'C2'C1'H11118.7°119.9°
C3'C2'C1'O5'28.0°57.6°
C3'C2'C1'N1148.8°177.6°
C3'C2'C1'H1095.4°62.4°
C3'C2'O2'H12180.0°179.7°
C2'C3'O3'H1460.8°60.4°
C2'C3'C4'H1551.8°62.9°
C4'C5'C6'O5'115.1°119.9°
C4'C5'C6'H17123.2°120.0°
C4'C5'O5'H17122.4°120.0°
C4'C5'C6'O6'62.7°175.0°
C4'C5'O5'C1'50.1°61.2°
C5'C4'C3'H1352.1°62.8°
C5'C4'O4'H1659.6°179.6°
C4'C5'C6'H18178.4°55.1°
C4'C5'C6'H1956.2°65.0°
C6'C5'O5'H17120.8°120.1°
C5'C6'O6'H18118.9°119.9°
C5'C6'O6'H19118.9°120.0°
C5'C6'O6'C1A171.2°180.0°
C6'C5'O5'C1'166.9°178.9°
C6'C5'C4'H1563.6°57.7°
C5'C6'H18H19123.1°120.1°
O5'C5'C6'O6'52.4°65.1°
C5'O5'C1'C2'31.7°61.2°
C5'O5'C1'N1151.1°178.8°
C5'O5'C1'H1091.2°58.8°
O5'C5'C4'H1549.8°62.3°
O5'C5'C6'H1866.5°175.0°
O5'C5'C6'H19171.3°54.9°
C6'O6'C1AC2A137.8°175.0°
C6'O6'C1AO5A102.1°65.1°
O6'C6'C5'H17174.1°55.0°
O6'C6'H18H19123.1°120.0°
C6'O6'C1AH2018.5°54.9°
O2AC2AC1AO6'62.2°62.5°
O2AC2AC1AC3A122.1°119.9°
O2AC2AC1AH27120.1°120.2°
O2AC2AC1AO5A179.3°177.6°
O2AC2AC3AH27120.2°120.2°
O2AC2AC3AO3A59.7°63.2°
O2AC2AC3AC4A179.9°176.9°
O2AC2AC1AH2057.9°57.6°
O2AC2AC3AH2561.6°57.0°
O2'C2'C1'H11118.0°120.1°
O2'C2'C1'O5'151.4°177.6°
O2'C2'C1'N187.8°62.4°
O2'C2'C1'H1028.0°57.6°
O2'C2'C3'H1348.9°57.0°
C2'C1'O5'N1119.4°120.0°
C2'C1'O5'H10122.9°120.0°
C2'C1'N1H10115.2°120.0°
C2'C1'N1C1103.9°145.0°
C2'C1'N1H976.1°35.0°
C1'C2'O2'H1255.2°60.0°
C1'C2'C3'H1373.6°62.9°
O6'C1AC2AO5A118.5°119.9°
O6'C1AC2AH20120.1°120.1°
O6'C1AO5AH20120.9°120.0°
O6'C1AC2AC3A175.6°177.5°
O6'C1AO5AC5A177.7°178.9°
C1AO6'C6'H1869.9°60.1°
C1AO6'C6'H1952.2°59.9°
O6'C1AC2AH2757.9°57.7°
O5'C1'N1H10117.9°120.0°
O5'C1'N1C123.0°95.0°
O5'C1'N1H9157.0°84.9°
O5'C1'C2'H1190.6°62.3°
C1'O5'C5'H1772.3°58.8°
C2AC1AO5AH20120.7°120.0°
C1AC2AC3AH27117.7°119.9°
C1AC2AC3AO3A178.2°176.9°
C1AC2AC3AC4A57.9°57.0°
C2AC1AO5AC5A59.3°61.2°
C1AC2AC3AH2560.5°63.0°
C1AC2AO2AH28180.0°59.9°
O5AC1AC2AC3A57.1°57.6°
C1AO5AC5AC4A61.1°61.2°
C1AO5AC5AH21179.0°178.8°
C1AO5AC5AH2258.9°58.8°
O5AC1AC2AH2760.7°62.3°
C1'N1C1H9180.0°179.9°
C1'N1C1N24.1°0.3°
C1'N1C1C2178.9°180.0°
N1C1'C2'H1130.2°57.7°
C2AC3AO3AC4A119.3°119.6°
C2AC3AO3AH25120.4°120.2°
C2AC3AC4AH25118.4°120.0°
C2AC3AC4AC5A60.1°56.9°
C2AC3AC4AO4A178.8°176.9°
C3AC2AC1AH2064.2°62.4°
C2AC3AC4AH2358.1°63.0°
C2AC3AO3AH26180.0°179.5°
C3AC2AO2AH2858.8°179.7°
O3AC3AC4AH25121.1°120.1°
O3AC3AC4AC5A179.4°176.9°
O3AC3AC4AO4A58.3°63.2°
O3AC3AC4AH2362.5°56.9°
O3AC3AC2AH2760.5°57.0°
C3AC4AC5AO5A61.3°57.6°
C3AC4AC5AO4A121.0°120.0°
C3AC4AC5AH23118.2°120.0°
C3AC4AO4AH23119.9°120.2°
C3AC4AC5AH21178.7°177.5°
C3AC4AC5AH2258.7°62.4°
C3AC4AO4AH24180.0°179.7°
C4AC3AO3AH2660.6°59.9°
C4AC3AC2AH2759.9°62.9°
O5AC5AC4AH21120.0°120.0°
O5AC5AC4AH22120.0°120.0°
O5AC5AC4AO4A177.7°177.6°
C5AO5AC1AH2061.4°58.8°
O5AC5AH21H22120.0°120.0°
O5AC5AC4AH2356.9°62.4°
C5AC4AO4AH23120.0°120.1°
C4AC5AH21H22120.1°120.0°
C5AC4AO4AH2460.0°59.9°
C5AC4AC3AH2558.3°63.0°
N1C1N2C2176.9°179.8°
N1C1C2C3145.2°179.7°
N1C1C2H124.7°60.2°
N1C1C2H294.3°59.8°
N1C1N2H3177.0°179.8°
C1N1C1'H10140.9°25.0°
N2C1C2C337.8°0.0°
N2C1C2H1158.3°120.0°
N2C1C2H282.7°120.0°
N2C1N1H9175.9°179.8°
O4AC4AC5AH2157.8°62.5°
O4AC4AC5AH2262.3°57.6°
O4AC4AC3AH2562.8°56.9°
C1C2C3C822.5°90.3°
C1C2C3H1120.5°120.0°
C1C2C3H2120.5°120.0°
C1C2C3C4158.0°90.1°
C1C2H1H2118.4°120.0°
C2C1N2H30.0°0.0°
C2C1N1H91.1°0.0°
C7C8C3H7180.0°179.5°
C7C8C3C2179.9°179.8°
C8C7C6H8180.0°179.5°
C7C8C3C40.6°0.6°
C8C7C6C50.4°0.3°
C8C7C6H6179.5°179.8°
C8C3C2C4179.5°179.7°
C3C8C7C60.7°0.5°
C8C3C4C50.4°0.3°
C8C3C2H198.0°149.7°
C8C3C2H2143.0°29.7°
C8C3C4H4179.6°179.7°
C3C8C7H8179.3°180.0°
C2C3C4C5179.9°180.0°
C3C2H1H2118.4°120.0°
C2C3C4H40.1°0.1°
C2C3C8H70.2°0.3°
C7C6C5H6180.0°180.0°
C7C6C5C40.2°0.0°
C7C6C5H5179.9°180.0°
C6C7C8H7179.3°180.0°
C3C4C5C60.1°0.0°
C3C4C5H4180.0°180.0°
C4C3C2H181.5°29.9°
C4C3C2H237.5°150.0°
C3C4C5H5179.9°179.9°
C4C3C8H7179.3°180.0°
C6C5C4H5180.0°179.9°
C6C5C4H4179.9°180.0°
C5C6C7H8179.5°179.7°
C4C5C6H6179.8°180.0°
H4C4C5H50.1°0.0°
H5C5C6H60.2°0.0°
H6C6C7H80.5°0.3°
H7C8C7H80.7°0.5°
H9N1C1'H1039.1°155.1°
H10C1'C2'H11145.9°177.7°
H11C2'O2'H1261.9°60.2°
H11C2'C3'H13167.8°177.2°
H13C3'O3'H1459.9°59.8°
H13C3'C4'H15170.1°177.2°
H15C4'O4'H1660.3°60.2°
H15C4'C5'H17173.1°177.7°
H17C5'C6'H1855.2°64.9°
H17C5'C6'H1966.9°175.0°
H20C1AC2AH27178.0°177.7°
H21C5AC4AH2363.0°57.6°
H22C5AC4AH23176.9°177.6°
H23C4AO4AH2460.1°60.2°
H23C4AC3AH25176.5°177.0°
H25C3AO3AH2659.6°60.3°
H25C3AC2AH27178.2°177.2°
H27C2AO2AH2860.7°60.2°

224931

PDB entries from 2024-09-11

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