VP5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C4 | sing | 1.47Å | 1.49Å | |
| N1 | C3 | sing | 1.47Å | 1.46Å | |
| C4 | C5 | sing | 1.53Å | 1.52Å | |
| C3 | C2 | sing | 1.53Å | 1.53Å | |
| C5 | O4 | sing | 1.43Å | 1.41Å | |
| C5 | O3 | sing | 1.43Å | 1.42Å | |
| C5 | C6 | sing | 1.53Å | 1.54Å | |
| C2 | C6 | sing | 1.53Å | 1.53Å | |
| C2 | C1 | sing | 1.51Å | 1.52Å | |
| C6 | O5 | sing | 1.43Å | 1.42Å | |
| O1 | C1 | doub | 1.21Å | 1.23Å | |
| C1 | O2 | sing | 1.34Å | 1.24Å | |
| C4 | H1 | sing | 1.09Å | 1.10Å | |
| C4 | H2 | sing | 1.09Å | 1.10Å | |
| C6 | H3 | sing | 1.09Å | 1.10Å | |
| N1 | H4 | sing | 1.01Å | 1.00Å | |
| C3 | H6 | sing | 1.09Å | 1.10Å | |
| C3 | H7 | sing | 1.09Å | 1.10Å | |
| O2 | H8 | sing | 0.97Å | 0.95Å | |
| C2 | H9 | sing | 1.09Å | 1.10Å | |
| O3 | H10 | sing | 0.97Å | 0.95Å | |
| O4 | H11 | sing | 0.97Å | 0.95Å | |
| O5 | H12 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4 | N1 | C3 | 111.8° | 111.2° |
| N1 | C4 | C5 | 110.4° | 109.6° |
| N1 | C4 | H1 | 109.3° | 109.4° |
| N1 | C4 | H2 | 109.2° | 109.4° |
| C4 | N1 | H4 | 108.9° | 111.1° |
| N1 | C3 | C2 | 110.5° | 109.5° |
| C3 | N1 | H4 | 108.9° | 110.9° |
| N1 | C3 | H6 | 109.2° | 109.5° |
| N1 | C3 | H7 | 109.2° | 109.4° |
| C4 | C5 | O4 | 111.5° | 109.5° |
| C4 | C5 | O3 | 110.0° | 109.5° |
| C4 | C5 | C6 | 109.3° | 109.3° |
| C5 | C4 | H1 | 109.2° | 109.5° |
| C5 | C4 | H2 | 109.3° | 109.5° |
| C3 | C2 | C6 | 110.6° | 109.3° |
| C3 | C2 | C1 | 109.9° | 109.5° |
| C2 | C3 | H6 | 109.2° | 109.5° |
| C2 | C3 | H7 | 109.2° | 109.5° |
| C3 | C2 | H9 | 108.9° | 109.5° |
| O4 | C5 | O3 | 108.9° | 109.5° |
| O4 | C5 | C6 | 110.8° | 109.5° |
| C5 | O4 | H11 | 109.5° | 114.0° |
| O3 | C5 | C6 | 106.3° | 109.5° |
| C5 | O3 | H10 | 109.5° | 114.0° |
| C5 | C6 | C2 | 112.2° | 109.1° |
| C5 | C6 | O5 | 109.0° | 109.5° |
| C5 | C6 | H3 | 107.8° | 109.5° |
| C6 | C2 | C1 | 109.6° | 109.5° |
| C2 | C6 | O5 | 110.5° | 109.5° |
| C2 | C6 | H3 | 107.9° | 109.6° |
| C6 | C2 | H9 | 108.8° | 109.6° |
| C2 | C1 | O1 | 115.9° | 120.0° |
| C2 | C1 | O2 | 119.5° | 120.0° |
| C1 | C2 | H9 | 109.0° | 109.6° |
| O5 | C6 | H3 | 109.3° | 109.6° |
| C6 | O5 | H12 | 109.5° | 114.0° |
| O1 | C1 | O2 | 124.3° | 120.0° |
| C1 | O2 | H8 | 109.5° | 117.0° |
| H1 | C4 | H2 | 109.4° | 109.4° |
| H6 | C3 | H7 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4 | N1 | C3 | H4 | 120.4° | 124.1° |
| N1 | C4 | C5 | H1 | 120.2° | 120.0° |
| N1 | C4 | C5 | H2 | 120.1° | 120.0° |
| C4 | N1 | C3 | C2 | 60.3° | 61.7° |
| N1 | C4 | C5 | O4 | 179.5° | 179.1° |
| N1 | C4 | C5 | O3 | 59.6° | 60.8° |
| N1 | C4 | C5 | C6 | 56.7° | 59.2° |
| N1 | C4 | H1 | H2 | 119.5° | 119.9° |
| C4 | N1 | C3 | H6 | 59.9° | 58.3° |
| C4 | N1 | C3 | H7 | 179.6° | 178.3° |
| C3 | N1 | C4 | C5 | 61.8° | 61.7° |
| N1 | C3 | C2 | H6 | 120.2° | 120.0° |
| N1 | C3 | C2 | H7 | 120.2° | 120.0° |
| N1 | C3 | C2 | C6 | 54.9° | 59.2° |
| N1 | C3 | C2 | C1 | 176.0° | 179.1° |
| C3 | N1 | C4 | H1 | 178.0° | 58.3° |
| C3 | N1 | C4 | H2 | 58.3° | 178.2° |
| N1 | C3 | H6 | H7 | 119.5° | 120.0° |
| N1 | C3 | C2 | H9 | 64.6° | 60.8° |
| C4 | C5 | O4 | O3 | 121.5° | 120.1° |
| C4 | C5 | O4 | C6 | 122.0° | 119.8° |
| C4 | C5 | O3 | C6 | 118.2° | 119.8° |
| C4 | C5 | C6 | C2 | 53.1° | 57.7° |
| C4 | C5 | C6 | O5 | 175.8° | 177.5° |
| C5 | C4 | H1 | H2 | 119.6° | 120.0° |
| C4 | C5 | C6 | H3 | 65.6° | 62.3° |
| C5 | C4 | N1 | H4 | 177.8° | 174.2° |
| C4 | C5 | O3 | H10 | 180.0° | 60.0° |
| C4 | C5 | O4 | H11 | 180.0° | 60.0° |
| C3 | C2 | C6 | C5 | 52.3° | 57.7° |
| C3 | C2 | C6 | C1 | 121.3° | 119.9° |
| C3 | C2 | C6 | H9 | 119.5° | 119.9° |
| C3 | C2 | C1 | H9 | 119.3° | 120.1° |
| C3 | C2 | C6 | O5 | 174.2° | 177.6° |
| C3 | C2 | C1 | O1 | 36.5° | 120.0° |
| C3 | C2 | C1 | O2 | 138.0° | 60.0° |
| C3 | C2 | C6 | H3 | 66.3° | 62.2° |
| C2 | C3 | N1 | H4 | 179.4° | 174.1° |
| C2 | C3 | H6 | H7 | 119.5° | 120.0° |
| O4 | C5 | O3 | C6 | 119.4° | 120.1° |
| O4 | C5 | C6 | C2 | 176.3° | 177.6° |
| O4 | C5 | C6 | O5 | 60.9° | 62.5° |
| O4 | C5 | C4 | H1 | 60.3° | 59.1° |
| O4 | C5 | C4 | H2 | 59.4° | 60.9° |
| O4 | C5 | C6 | H3 | 57.7° | 57.7° |
| O4 | C5 | O3 | H10 | 57.6° | 60.1° |
| O3 | C5 | C6 | C2 | 65.5° | 62.3° |
| O3 | C5 | C6 | O5 | 57.2° | 57.6° |
| O3 | C5 | C4 | H1 | 60.6° | 179.2° |
| O3 | C5 | C4 | H2 | 179.8° | 59.2° |
| O3 | C5 | C6 | H3 | 175.8° | 177.8° |
| O3 | C5 | O4 | H11 | 58.5° | 60.1° |
| C5 | C6 | C2 | O5 | 121.9° | 119.9° |
| C5 | C6 | C2 | H3 | 118.6° | 119.9° |
| C5 | C6 | C2 | C1 | 173.6° | 177.6° |
| C5 | C6 | O5 | H3 | 117.7° | 120.1° |
| C6 | C5 | C4 | H1 | 176.8° | 60.8° |
| C6 | C5 | C4 | H2 | 63.5° | 179.2° |
| C5 | C6 | C2 | H9 | 67.3° | 62.3° |
| C6 | C5 | O3 | H10 | 61.8° | 179.9° |
| C6 | C5 | O4 | H11 | 58.0° | 179.8° |
| C5 | C6 | O5 | H12 | 180.0° | 60.1° |
| C6 | C2 | C1 | H9 | 119.0° | 120.2° |
| C2 | C6 | O5 | H3 | 118.6° | 120.2° |
| C6 | C2 | C1 | O1 | 85.3° | 0.3° |
| C6 | C2 | C1 | O2 | 100.3° | 179.8° |
| C6 | C2 | C3 | H6 | 65.3° | 60.8° |
| C6 | C2 | C3 | H7 | 175.1° | 179.2° |
| C2 | C6 | O5 | H12 | 56.3° | 179.7° |
| C1 | C2 | C6 | O5 | 64.5° | 62.6° |
| C2 | C1 | O1 | O2 | 174.2° | 180.0° |
| C1 | C2 | C6 | H3 | 55.0° | 57.7° |
| C1 | C2 | C3 | H6 | 55.9° | 59.1° |
| C1 | C2 | C3 | H7 | 63.8° | 60.9° |
| C2 | C1 | O2 | H8 | 174.0° | 179.9° |
| O5 | C6 | C2 | H9 | 54.6° | 57.6° |
| O1 | C1 | O2 | H8 | 0.0° | 0.0° |
| O1 | C1 | C2 | H9 | 155.7° | 119.9° |
| O2 | C1 | C2 | H9 | 18.7° | 60.0° |
| H1 | C4 | N1 | H4 | 57.7° | 65.8° |
| H2 | C4 | N1 | H4 | 62.0° | 54.1° |
| H3 | C6 | C2 | H9 | 174.1° | 177.9° |
| H3 | C6 | O5 | H12 | 62.3° | 60.1° |
| H4 | N1 | C3 | H6 | 60.5° | 65.9° |
| H4 | N1 | C3 | H7 | 59.2° | 54.2° |
| H6 | C3 | C2 | H9 | 175.2° | 179.2° |
| H7 | C3 | C2 | H9 | 55.6° | 59.2° |
