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VNR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Psing1.61Å1.52Å
PO2Psing1.61Å1.50Å
PO3Pdoub1.48Å1.50Å
PO5'sing1.61Å1.62Å
N1C2sing1.34Å1.35Å
N1C10doub1.31Å1.35Å
C2O2doub1.22Å1.24Å
C2N3sing1.34Å1.35Å
N3C4sing1.35Å1.35Å
C4O4doub1.21Å1.26Å
C4C4Asing1.50Å1.49Å
N5C4Asing1.47Å1.43Å
N5C5Asing1.41Å1.33Å
C6C7sing1.38Å1.38ÅAromatic
C6C5Adoub1.38Å1.38ÅAromatic
C7C8doub1.38Å1.49ÅAromatic
C7C7Msing1.51Å1.51Å
C8C9sing1.38Å1.38ÅAromatic
C8C8Msing1.51Å1.52Å
C9C9Adoub1.39Å1.38ÅAromatic
C1'N10sing1.46Å1.47Å
C1'C2'sing1.53Å1.53Å
C10N10sing1.35Å1.41Å
C10C4Asing1.51Å1.48Å
N10C9Asing1.40Å1.42Å
C11C14sing1.51Å1.49Å
C11C4Asing1.53Å1.52Å
C12C13sing1.53Å1.54Å
C12O15sing1.43Å1.44Å
C13C14sing1.51Å1.51Å
C14C15doub1.31Å1.33Å
C15C16sing1.51Å1.50Å
O15P99sing1.61Å1.62Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.53Å1.53Å
O22P55doub1.48Å1.51Å
C3'O3'sing1.43Å1.44Å
C3'C4'sing1.53Å1.53Å
O33P55sing1.61Å1.52Å
C4'O4'sing1.43Å1.44Å
C4'C5'sing1.53Å1.55Å
O44P55sing1.61Å1.51Å
C5'O5'sing1.43Å1.44Å
P55O66sing1.61Å1.64Å
C5AC9Asing1.40Å1.48ÅAromatic
O66P99sing1.61Å1.64Å
O77P99sing1.61Å1.52Å
O88P99doub1.48Å1.51Å
N3HN3sing0.97Å1.00Å
N5HN5sing0.97Å1.00Å
C6H6sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
C1'H1'Asing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C15H15sing1.08Å1.08Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
C16H16Bsing1.09Å1.10Å
O1PHO1Psing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O2PHO2Psing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O33HO33sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
O44HO44sing0.97Å0.95Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
O77HO77sing0.97Å0.95Å
C7MH7Msing1.09Å1.10Å
C7MH7MAsing1.09Å1.10Å
C7MH7MBsing1.09Å1.10Å
C8MH8Msing1.09Å1.10Å
C8MH8MAsing1.09Å1.10Å
C8MH8MBsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P111.7°109.5°
O1PPO3P115.3°109.5°
O1PPO5'104.7°109.5°
PO1PHO1P109.5°114.0°
O2PPO3P114.7°109.5°
O2PPO5'103.1°109.5°
PO2PHO2P109.5°114.0°
O3PPO5'105.8°109.5°
PO5'C5'121.6°123.0°
C2N1C10119.8°122.3°
N1C2O2118.2°119.1°
N1C2N3121.0°121.9°
N1C10N10117.4°120.4°
N1C10C4A121.8°120.7°
O2C2N3119.7°119.0°
C2N3C4121.7°120.9°
C2N3HN3119.2°119.6°
N3C4O4119.9°119.7°
N3C4C4A118.5°120.6°
C4N3HN3119.1°119.5°
O4C4C4A119.3°119.7°
C4C4AN5113.8°111.7°
C4C4AC10110.2°110.9°
C4C4AC11108.2°108.8°
C4AN5C5A117.2°116.5°
N5C4AC10106.3°108.6°
N5C4AC1198.4°108.8°
C4AN5HN5107.0°121.8°
N5C5AC6120.0°120.8°
N5C5AC9A116.2°118.9°
C5AN5HN5106.9°121.8°
C7C6C5A118.0°119.7°
C6C7C8118.5°120.1°
C6C7C7M117.8°119.9°
C7C6H6121.0°120.1°
C6C5AC9A121.4°120.4°
C5AC6H6121.0°120.2°
C8C7C7M119.7°119.9°
C7C8C9119.7°120.4°
C7C8C8M121.2°119.8°
C7C7MH7M109.5°109.4°
C7C7MH7MA109.5°109.5°
C7C7MH7MB109.5°109.5°
C9C8C8M118.1°119.8°
C8C9C9A119.4°119.9°
C8C9H9120.3°120.1°
C8C8MH8M109.5°109.5°
C8C8MH8MA109.5°109.5°
C8C8MH8MB109.5°109.4°
C9C9AN10122.2°120.3°
C9C9AC5A118.4°119.5°
C9AC9H9120.3°120.0°
N10C1'C2'106.2°109.5°
C1'N10C10117.2°119.9°
C1'N10C9A121.4°120.0°
N10C1'H1'110.6°109.4°
N10C1'H1'A110.6°109.5°
C1'C2'O2'108.2°109.4°
C1'C2'C3'112.6°109.5°
C2'C1'H1'110.6°109.5°
C2'C1'H1'A110.6°109.5°
C1'C2'H2'108.5°109.5°
N10C10C4A120.8°118.9°
C10N10C9A118.5°120.1°
C10C4AC11119.6°108.0°
N10C9AC5A116.8°120.2°
C14C11C4A115.1°109.5°
C11C14C13120.2°120.0°
C11C14C15114.6°120.0°
C14C11H11107.7°109.5°
C14C11H11A107.7°109.5°
C4AC11H11107.6°109.5°
C4AC11H11A107.6°109.4°
C13C12O15112.3°109.5°
C12C13C14109.7°109.4°
C13C12H12108.5°109.5°
C13C12H12A108.5°109.5°
C12C13H13109.4°109.5°
C12C13H13A109.4°109.5°
C12O15P99122.8°123.0°
O15C12H12108.5°109.5°
O15C12H12A108.5°109.4°
C13C14C15125.2°120.0°
C14C13H13109.4°109.5°
C14C13H13A109.4°109.5°
C14C15C16122.1°120.0°
C14C15H15119.0°120.0°
C16C15H15118.9°120.0°
C15C16H16109.5°109.5°
C15C16H16A109.5°109.5°
C15C16H16B109.5°109.5°
O15P99O66103.9°109.5°
O15P99O77107.3°109.5°
O15P99O88109.0°109.4°
O2'C2'C3'110.1°109.4°
O2'C2'H2'111.0°109.5°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'109.5°109.4°
C2'C3'C4'112.7°109.5°
C3'C2'H2'106.5°109.5°
C2'C3'H3'107.4°109.5°
O22P55O33114.7°109.5°
O22P55O44113.7°109.4°
O22P55O66104.8°109.4°
O3'C3'C4'109.9°109.4°
O3'C3'H3'110.4°109.5°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'108.1°109.5°
C3'C4'C5'112.6°109.5°
C4'C3'H3'107.0°109.5°
C3'C4'H4'108.8°109.5°
O33P55O44113.6°109.5°
O33P55O66104.6°109.5°
P55O33HO33109.5°114.0°
O4'C4'C5'110.7°109.5°
O4'C4'H4'110.7°109.5°
C4'O4'HO4'109.5°114.0°
C4'C5'O5'112.2°109.5°
C5'C4'H4'106.0°109.5°
C4'C5'H5'108.6°109.4°
C4'C5'H5'A108.6°109.4°
O44P55O66103.8°109.5°
P55O44HO44109.5°114.0°
O5'C5'H5'108.6°109.5°
O5'C5'H5'A108.6°109.5°
P55O66P99127.1°134.0°
O66P99O77109.2°109.5°
O66P99O88108.3°109.5°
O77P99O88118.2°109.5°
P99O77HO77109.5°114.0°
H1'C1'H1'A108.3°109.5°
H11C11H11A111.2°109.5°
H12C12H12A110.4°109.5°
H13C13H13A109.5°109.5°
H16C16H16A109.5°109.4°
H16C16H16B109.5°109.4°
H16AC16H16B109.4°109.4°
H5'C5'H5'A110.4°109.5°
H7MC7MH7MA109.5°109.4°
H7MC7MH7MB109.4°109.5°
H7MAC7MH7MB109.5°109.5°
H8MC8MH8MA109.5°109.5°
H8MC8MH8MB109.5°109.4°
H8MAC8MH8MB109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO3P133.6°120.0°
O1PPO2PO5'111.9°120.0°
O1PPO3PO5'115.3°120.0°
O1PPO5'C5'170.1°175.0°
O1PPO2PHO2P133.6°60.1°
O2PPO3PO5'112.9°120.0°
O2PPO5'C5'53.2°65.0°
O2PPO1PHO1P133.2°60.0°
O3PPO5'C5'67.6°55.0°
O3PPO1PHO1P0.0°60.1°
O3PPO2PHO2P0.0°179.9°
PO5'C5'C4'98.2°180.0°
O5'PO1PHO1P115.9°179.9°
O5'PO2PHO2P114.4°59.9°
PO5'C5'H5'21.8°60.0°
PO5'C5'H5'A141.8°60.0°
N1C2O2N3168.4°180.0°
N1C2N3C414.9°9.4°
C2N1C10N10166.1°172.8°
C2N1C10C4A15.5°8.1°
N1C2N3HN3165.1°170.6°
C10N1C2O2177.8°173.5°
C10N1C2N39.5°6.5°
N1C10C4AC423.5°17.7°
N1C10C4AN5147.2°140.8°
N1C10N10C1'21.9°13.3°
N1C10N10C4A178.4°179.1°
N1C10N10C9A176.8°166.8°
N1C10C4AC11102.9°101.4°
O2C2N3C4177.0°170.6°
O2C2N3HN33.0°9.3°
C2N3C4HN3180.0°179.9°
C2N3C4O4172.5°177.5°
C2N3C4C4A25.1°2.5°
N3C4O4C4A162.3°179.9°
N3C4C4AN5146.8°136.0°
N3C4C4AC1027.6°14.8°
N3C4C4AC11104.9°103.9°
O4C4C4AN550.6°43.9°
O4C4C4AC10169.8°165.2°
O4C4C4AC1157.6°76.2°
O4C4N3HN37.5°2.6°
C4C4AN5C10121.5°122.6°
C4C4AN5C11114.2°120.1°
C4C4AN5C5A179.1°168.9°
C4C4AC10N10158.2°163.2°
C4C4AC10C11126.4°119.1°
C4C4AC11C1475.3°60.0°
C4AC4N3HN3154.9°177.5°
C4C4AN5HN559.2°11.2°
C4C4AC11H1144.8°180.0°
C4C4AC11H11A164.7°60.0°
C4AN5C5AHN5120.0°179.9°
C4AN5C5AC6148.5°152.0°
N5C4AC10N1034.5°40.1°
N5C4AC10C11109.9°117.8°
N5C4AC11C14166.2°61.9°
C4AN5C5AC9A48.9°27.8°
N5C4AC11H1173.7°58.1°
N5C4AC11H11A46.2°178.1°
N5C5AC6C7143.8°179.3°
N5C5AC6C9A161.6°179.8°
N5C5AC9AC9149.2°179.1°
C5AN5C4AC1057.6°46.3°
N5C5AC9AN1013.0°1.6°
C5AN5C4AC1166.6°71.1°
N5C5AC6H636.2°0.7°
C7C6C5AH6180.0°180.0°
C6C7C8C7M156.9°180.0°
C6C7C8C920.6°0.4°
C6C7C8C8M171.1°179.7°
C7C6C5AC9A17.8°0.5°
C6C7C7MH7M79.0°90.0°
C6C7C7MH7MA161.0°150.0°
C6C7C7MH7MB41.0°30.0°
C5AC6C7C821.0°0.0°
C5AC6C7C7M178.3°180.0°
C6C5AC9AC913.1°0.6°
C6C5AC9AN10175.3°178.6°
C6C5AN5HN591.5°28.0°
C7C8C9C8M168.7°179.9°
C7C8C9C9A16.0°0.2°
C8C7C6H6159.0°180.0°
C7C8C9H9164.0°179.8°
C8C7C7MH7M78.1°90.0°
C8C7C7MH7MA41.9°29.9°
C8C7C7MH7MB161.9°150.0°
C7C8C8MH8M96.1°90.0°
C7C8C8MH8MA143.9°150.0°
C7C8C8MH8MB23.9°30.0°
C7MC7C8C9177.5°179.6°
C7MC7C8C8M14.2°0.3°
C7MC7C6H61.7°0.0°
C7C7MH7MH7MA120.0°119.9°
C7C7MH7MH7MB120.0°120.0°
C7C7MH7MAH7MB120.0°120.0°
C8C9C9AH9180.0°179.9°
C8C9C9AN10173.3°179.0°
C8C9C9AC5A12.1°0.3°
C9C8C8MH8M95.4°90.1°
C9C8C8MH8MA24.6°30.0°
C9C8C8MH8MB144.6°149.9°
C8MC8C9C9A175.3°179.8°
C8MC8C9H94.7°0.1°
C8C8MH8MH8MA120.0°120.1°
C8C8MH8MH8MB120.0°120.0°
C8C8MH8MAH8MB120.0°119.9°
C9C9AN10C1'30.1°7.7°
C9C9AN10C10169.4°172.2°
C9C9AN10C5A161.5°179.2°
N10C1'C2'H1'120.0°120.0°
N10C1'C2'H1'A120.0°120.0°
C1'N10C10C9A161.3°179.9°
C1'N10C10C4A156.5°165.9°
N10C1'C2'O2'64.9°60.0°
N10C1'C2'C3'173.1°180.0°
C1'N10C9AC5A168.5°171.5°
N10C1'H1'H1'A121.4°120.0°
N10C1'C2'H2'55.6°60.0°
C2'C1'N10C10117.5°90.0°
C2'C1'N10C9A81.7°90.0°
C1'C2'O2'C3'123.4°120.0°
C1'C2'O2'H2'118.9°120.0°
C1'C2'C3'H2'118.7°120.0°
C1'C2'C3'O3'64.5°60.0°
C1'C2'C3'C4'58.0°180.0°
C2'C1'H1'H1'A121.3°120.0°
C1'C2'O2'HO2'180.0°60.0°
C1'C2'C3'H3'175.6°60.0°
N10C10C4AC1175.4°77.7°
C10N10C9AC5A8.0°8.5°
C10N10C1'H1'122.5°150.0°
C10N10C1'H1'A2.5°30.0°
C4AC10N10C9A4.8°14.1°
C10C4AC11C1452.1°179.6°
C10C4AN5HN562.3°133.8°
C10C4AC11H11172.1°59.6°
C10C4AC11H11A68.0°60.4°
N10C9AC9H96.7°1.1°
C9AN10C1'H1'38.3°29.9°
C9AN10C1'H1'A158.3°149.9°
C14C11C4AH11120.0°120.0°
C14C11C4AH11A120.0°120.0°
C11C14C13C1228.2°85.0°
C11C14C13C15177.1°180.0°
C11C14C15C16180.0°180.0°
C14C11H11H11A117.7°120.0°
C11C14C13H13148.2°155.0°
C11C14C13H13A91.8°35.0°
C11C14C15H150.1°0.1°
C4AC11C14C13112.4°85.0°
C4AC11C14C1570.2°95.0°
C11C4AN5HN5173.4°108.9°
C4AC11H11H11A117.7°120.0°
C13C12O15H12120.0°120.0°
C13C12O15H12A120.0°120.0°
C12C13C14H13120.0°120.0°
C12C13C14H13A120.0°120.0°
C12C13C14C15148.9°95.0°
C13C12O15P99117.0°180.0°
C13C12H12H12A118.8°120.0°
C12C13H13H13A119.9°120.0°
O15C12C13C14120.9°180.0°
C12O15P99O667.0°175.0°
C12O15P99O77122.6°65.0°
C12O15P99O88108.2°55.0°
O15C12H12H12A118.8°120.0°
O15C12C13H130.8°60.0°
O15C12C13H13A119.1°60.0°
C13C14C15C162.7°0.1°
C13C14C11H117.6°35.0°
C13C14C11H11A127.6°155.0°
C14C13C12H120.9°60.0°
C14C13C12H12A119.1°60.0°
C14C13H13H13A119.9°120.0°
C13C14C15H15177.4°180.0°
C14C15C16H15180.0°179.9°
C15C14C11H11169.8°145.0°
C15C14C11H11A49.8°25.0°
C15C14C13H1328.9°24.9°
C15C14C13H13A91.1°145.0°
C14C15C16H16180.0°60.0°
C14C15C16H16A60.0°60.0°
C14C15C16H16B60.0°180.0°
C15C16H16H16A120.0°120.1°
C15C16H16H16B120.0°120.0°
C15C16H16AH16B120.0°120.0°
O15P99O66P55177.0°160.0°
O15P99O66O77114.3°120.0°
O15P99O66O88115.8°120.0°
O15P99O77O88123.7°120.0°
P99O15C12H12123.0°60.0°
P99O15C12H12A3.0°60.0°
O15P99O77HO77123.7°60.0°
O2'C2'C3'H2'120.5°120.0°
O2'C2'C3'O3'56.3°NaN°
O2'C2'C3'C4'178.9°60.0°
O2'C2'C1'H1'175.1°180.0°
O2'C2'C1'H1'A55.1°60.0°
O2'C2'C3'H3'63.5°60.0°
C2'C3'O3'C4'124.2°120.0°
C2'C3'O3'H3'118.0°120.0°
C2'C3'C4'H3'117.8°120.1°
C2'C3'C4'O4'35.0°60.0°
C2'C3'C4'C5'157.7°180.0°
C3'C2'C1'H1'53.1°60.0°
C3'C2'C1'H1'A66.8°60.0°
C3'C2'O2'HO2'56.6°60.0°
C2'C3'O3'HO3'180.0°60.0°
C2'C3'C4'H4'85.2°60.0°
O22P55O33O44133.2°120.0°
O22P55O33O66114.3°120.0°
O22P55O44O66113.3°119.9°
O22P55O66P9995.8°40.0°
O22P55O33HO330.0°60.0°
O22P55O44HO440.0°180.0°
O3'C3'C4'H3'119.8°120.0°
O3'C3'C4'O4'157.4°180.0°
O3'C3'C4'C5'80.0°60.0°
O3'C3'C2'H2'176.7°60.0°
O3'C3'C4'H4'37.2°60.0°
C3'C4'O4'C5'123.8°120.0°
C3'C4'O4'H4'119.0°120.0°
C3'C4'C5'H4'118.8°120.0°
C3'C4'C5'O5'53.8°175.0°
C4'C3'C2'H2'60.7°60.0°
C4'C3'O3'HO3'55.8°60.0°
C3'C4'O4'HO4'95.1°60.0°
C3'C4'C5'H5'173.8°55.0°
C3'C4'C5'H5'A66.2°64.9°
O33P55O44O66113.0°120.1°
O33P55O66P9925.2°160.0°
O33P55O44HO44133.7°60.0°
O4'C4'C5'H4'120.1°120.0°
O4'C4'C5'O5'67.3°65.0°
O4'C4'C3'H3'82.8°60.0°
O4'C4'C5'H5'52.7°175.0°
O4'C4'C5'H5'A172.7°55.0°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C5'C4'C3'H3'39.8°60.0°
C5'C4'O4'HO4'28.7°60.0°
C4'C5'H5'H5'A118.9°119.9°
O44P55O66P99144.6°79.9°
O44P55O33HO33133.3°60.0°
O5'C5'C4'H4'172.6°55.0°
O5'C5'H5'H5'A118.9°120.0°
P55O66P99O7768.7°80.0°
P55O66P99O8861.3°40.0°
O66P55O33HO33114.2°180.0°
O66P55O44HO44113.3°60.1°
C9AC5AN5HN571.1°152.2°
C9AC5AC6H6162.2°179.5°
C5AC9AC9H9167.9°179.7°
O66P99O77O88124.3°120.0°
O66P99O77HO77124.3°60.0°
O88P99O77HO770.0°180.0°
H1'C1'C2'H2'64.4°60.0°
H1'AC1'C2'H2'175.6°180.0°
H12C12C13H13119.2°60.0°
H12C12C13H13A120.9°180.0°
H12AC12C13H13120.8°180.0°
H12AC12C13H13A0.9°60.0°
H15C15C16H160.0°119.9°
H15C15C16H16A120.1°120.0°
H15C15C16H16B120.0°0.1°
H16C16H16AH16B120.0°119.9°
H2'C2'O2'HO2'61.1°180.0°
H2'C2'C3'H3'56.9°180.0°
H3'C3'O3'HO3'62.0°180.0°
H3'C3'C4'H4'157.0°180.0°
H4'C4'O4'HO4'145.9°180.0°
H4'C4'C5'H5'67.4°65.0°
H4'C4'C5'H5'A52.7°175.0°
H7MC7MH7MAH7MB119.9°120.1°
H8MC8MH8MAH8MB120.0°120.0°

223532

PDB entries from 2024-08-07

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