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SummaryGeometryRelated PDB entries

VNO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C10C09sing1.53Å1.43Å
C10S11sing1.81Å1.74Å
C01N02sing1.47Å1.45Å
C03N02sing1.46Å1.45Å
C04N02sing1.35Å1.46Å
C04N06sing1.35Å1.47Å
C04O05doub1.22Å1.18Å
C07N06sing1.47Å1.45Å
C08C14sing1.53Å1.44Å
C08N06sing1.46Å1.46Å
C14S11sing1.81Å1.74Å
O12S11doub1.42Å1.47Å
O13S11doub1.42Å1.47Å
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C01H5sing1.09Å1.10Å
C03H6sing1.09Å1.10Å
C03H7sing1.09Å1.10Å
C03H8sing1.09Å1.10Å
C07H9sing1.09Å1.10Å
C07H10sing1.09Å1.10Å
C07H11sing1.09Å1.10Å
C08H12sing1.09Å1.10Å
C08H13sing1.09Å1.10Å
C09H14sing1.09Å1.10Å
C09H15sing1.09Å1.10Å
C09H16sing1.09Å1.10Å
C14H17sing1.09Å1.10Å
C14H18sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C09C10S11104.3°109.5°
C09C10H1110.7°109.5°
C09C10H2110.7°109.4°
C10C09H14109.5°109.5°
C10C09H15109.5°109.4°
C10C09H16109.5°109.5°
C10S11C14104.1°101.9°
C10S11O12108.2°108.6°
C10S11O13107.8°108.6°
S11C10H1110.8°109.5°
S11C10H2110.7°109.5°
C01N02C03118.5°120.0°
C01N02C04123.7°120.1°
N02C01H3109.5°109.5°
N02C01H4109.4°109.4°
N02C01H5109.4°109.4°
C03N02C04117.8°120.0°
N02C03H6109.5°109.5°
N02C03H7109.5°109.5°
N02C03H8109.5°109.5°
N02C04N06126.3°120.0°
N02C04O05116.2°120.0°
N06C04O05117.6°120.0°
C04N06C07122.5°120.0°
C04N06C08119.1°120.0°
C07N06C08118.4°120.0°
N06C07H9109.5°109.4°
N06C07H10109.4°109.5°
N06C07H11109.5°109.5°
C14C08N06111.2°109.5°
C08C14S11106.9°109.5°
C14C08H12109.1°109.5°
C14C08H13109.0°109.4°
C08C14H17110.1°109.4°
C08C14H18110.1°109.5°
N06C08H12109.0°109.6°
N06C08H13109.0°109.5°
C14S11O12109.8°108.6°
C14S11O13108.0°108.6°
S11C14H17110.1°109.5°
S11C14H18110.1°109.5°
O12S11O13118.1°119.2°
H1C10H2109.5°109.5°
H3C01H4109.5°109.5°
H3C01H5109.5°109.5°
H4C01H5109.5°109.5°
H6C03H7109.5°109.5°
H6C03H8109.4°109.4°
H7C03H8109.5°109.5°
H9C07H10109.4°109.5°
H9C07H11109.5°109.4°
H10C07H11109.5°109.5°
H12C08H13109.5°109.4°
H14C09H15109.4°109.5°
H14C09H16109.5°109.5°
H15C09H16109.5°109.5°
H17C14H18109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C09C10S11H1119.2°120.1°
C09C10S11H2119.2°120.0°
C09C10S11C1429.1°180.0°
C09C10S11O12145.8°65.4°
C09C10S11O1385.5°65.5°
C09C10H1H2122.4°120.0°
C10C09H14H15120.0°119.9°
C10C09H14H16120.0°120.1°
C10C09H15H16120.0°120.1°
C10S11C14C0818.1°180.0°
C10S11C14O12115.6°114.5°
C10S11C14O13114.4°114.5°
C10S11O12O13122.7°124.9°
S11C10H1H2122.4°120.0°
S11C10C09H14180.0°180.0°
S11C10C09H1560.0°60.1°
S11C10C09H1660.0°60.0°
C10S11C14H17137.7°60.0°
C10S11C14H18101.5°60.0°
C01N02C03C04179.9°179.9°
C01N02C04N060.4°160.1°
C01N02C04O05179.7°20.0°
N02C01H3H4120.0°120.0°
N02C01H3H5120.0°120.0°
N02C01H4H5119.9°119.9°
C01N02C03H6180.0°95.7°
C01N02C03H760.0°144.3°
C01N02C03H860.0°24.3°
C03N02C04N06179.7°19.9°
C03N02C04O050.4°160.1°
C03N02C01H3180.0°0.0°
C03N02C01H460.0°120.1°
C03N02C01H560.0°120.0°
N02C03H6H7120.0°120.0°
N02C03H6H8120.0°120.0°
N02C03H7H8120.0°120.0°
N02C04N06O05179.3°180.0°
N02C04N06C070.4°12.1°
N02C04N06C08179.9°167.9°
C04N02C01H30.1°180.0°
C04N02C01H4120.1°60.0°
C04N02C01H5119.9°59.9°
C04N02C03H60.1°84.2°
C04N02C03H7119.9°35.8°
C04N02C03H8120.1°155.8°
C04N06C07C08179.7°180.0°
C04N06C08C14136.4°90.1°
C04N06C07H9180.0°81.1°
C04N06C07H1060.0°158.9°
C04N06C07H1160.0°38.8°
C04N06C08H12103.4°30.0°
C04N06C08H1316.1°150.0°
O05C04N06C07179.8°167.9°
O05C04N06C080.6°12.1°
C07N06C08C1443.4°90.0°
N06C07H9H10120.0°120.0°
N06C07H9H11120.0°119.9°
N06C07H10H11120.0°120.0°
C07N06C08H1276.9°150.0°
C07N06C08H13163.6°30.0°
C14C08N06H12120.3°120.1°
C14C08N06H13120.2°119.9°
C08C14S11H17119.6°120.0°
C08C14S11H18119.6°120.0°
C08C14S11O12133.7°65.5°
C08C14S11O1396.3°65.5°
C14C08H12H13119.2°120.0°
C08C14H17H18121.2°120.0°
N06C08C14S11120.2°180.0°
C08N06C07H90.3°98.9°
C08N06C07H10120.3°21.1°
C08N06C07H11119.7°141.2°
N06C08H12H13119.2°120.0°
N06C08C14H170.6°60.0°
N06C08C14H18120.2°60.0°
C14S11O12O13124.3°125.0°
C14S11C10H190.1°59.9°
C14S11C10H2148.2°60.0°
S11C14C08H120.1°59.9°
S11C14C08H13119.6°60.0°
S11C14H17H18121.2°120.0°
O12S11C10H126.6°174.5°
O12S11C10H295.1°54.5°
O12S11C14H17106.7°54.5°
O12S11C14H1814.1°174.5°
O13S11C10H1155.4°54.5°
O13S11C10H233.7°174.5°
O13S11C14H1723.3°174.5°
O13S11C14H18144.2°54.5°
H1C10C09H1460.8°60.0°
H1C10C09H1559.2°60.0°
H1C10C09H16179.2°180.0°
H2C10C09H1460.9°60.0°
H2C10C09H15179.2°180.0°
H2C10C09H1659.2°60.0°
H3C01H4H5120.0°120.0°
H6C03H7H8120.0°120.0°
H9C07H10H11120.0°120.0°
H12C08C14H17119.7°60.1°
H12C08C14H18119.5°179.9°
H13C08C14H17120.9°180.0°
H13C08C14H180.0°60.0°
H14C09H15H16120.0°120.0°

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PDB entries from 2024-10-09

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