Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VMN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.37Å
C1C6sing1.41Å1.44Å
C1O7sing1.35Å1.36Å
C2C3sing1.40Å1.47Å
C3N4sing1.35Å1.43Å
C3O8doub1.22Å1.29Å
N4C5sing1.36Å1.37Å
N4C9sing1.47Å1.45Å
C5C6doub1.35Å1.36Å
C9C10sing1.51Å1.51Å
C10C11doub1.38Å1.39ÅAromatic
C10C15sing1.38Å1.40ÅAromatic
C11C12sing1.38Å1.40ÅAromatic
C12C13doub1.38Å1.41ÅAromatic
C13C14sing1.38Å1.42ÅAromatic
C13CL16sing1.74Å1.71Å
C14C15doub1.38Å1.41ÅAromatic
C2H1sing1.08Å1.08Å
C5H2sing1.08Å1.08Å
C6H3sing1.08Å1.08Å
O7H4sing0.97Å0.95Å
C9H5sing1.09Å1.10Å
C9H6sing1.09Å1.10Å
C11H7sing1.08Å1.08Å
C12H8sing1.08Å1.08Å
C14H9sing1.08Å1.08Å
C15H10sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6121.3°119.0°
C2C1O7119.2°120.5°
C1C2C3118.6°119.1°
C1C2H1120.7°120.4°
C6C1O7119.5°120.5°
C1C6C5119.5°119.8°
C1C6H3120.2°120.1°
C1O7H4109.5°114.0°
C2C3N4117.3°120.1°
C2C3O8125.4°119.9°
C3C2H1120.7°120.5°
N4C3O8117.3°120.0°
C3N4C5121.3°121.1°
C3N4C9121.0°119.4°
C5N4C9117.7°119.5°
N4C5C6121.6°120.9°
N4C5H2119.2°119.6°
N4C9C10110.3°109.5°
N4C9H5109.2°109.4°
N4C9H6109.2°109.5°
C6C5H2119.2°119.5°
C5C6H3120.2°120.1°
C9C10C11118.2°120.0°
C9C10C15122.1°119.9°
C10C9H5109.3°109.5°
C10C9H6109.3°109.5°
C11C10C15119.7°120.1°
C10C11C12121.6°120.0°
C10C11H7119.2°120.0°
C10C15C14120.4°120.0°
C10C15H10119.8°120.0°
C11C12C13118.5°120.0°
C12C11H7119.2°120.0°
C11C12H8120.7°120.0°
C12C13C14120.9°120.0°
C12C13CL16120.5°120.0°
C13C12H8120.8°120.0°
C14C13CL16118.6°120.0°
C13C14C15118.7°120.0°
C13C14H9120.6°120.0°
C15C14H9120.6°120.0°
C14C15H10119.8°120.0°
H5C9H6109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6O7179.8°179.7°
C1C2C3H1180.0°179.9°
C1C2C3N42.4°0.0°
C1C2C3O8179.3°179.9°
C2C1C6C53.6°0.1°
C2C1C6H3176.4°179.9°
C2C1O7H4180.0°180.0°
C6C1C2C32.8°0.0°
C1C6C5N41.2°0.1°
C1C6C5H3180.0°180.0°
C6C1C2H1177.2°180.0°
C1C6C5H2178.8°179.9°
C6C1O7H40.3°0.3°
O7C1C2C3177.0°179.7°
O7C1C6C5176.2°179.8°
O7C1C2H13.1°0.3°
O7C1C6H33.8°0.2°
C2C3N4O8177.2°180.0°
C2C3N4C57.1°0.0°
C2C3N4C9170.4°180.0°
C3N4C5C9177.6°180.0°
C3N4C5C66.7°0.1°
C3N4C9C10112.5°90.0°
N4C3C2H1177.7°180.0°
C3N4C5H2173.3°179.9°
C3N4C9H5127.4°150.0°
C3N4C9H67.7°30.0°
O8C3N4C5175.7°179.9°
O8C3N4C96.7°0.0°
O8C3C2H10.7°0.0°
N4C5C6H2180.0°180.0°
C5N4C9C1065.2°90.0°
N4C5C6H3178.8°179.9°
C5N4C9H555.0°30.0°
C5N4C9H6174.7°150.0°
C9N4C5C6171.0°180.0°
N4C9C10H5120.1°120.0°
N4C9C10H6120.1°120.0°
N4C9C10C11139.1°90.0°
N4C9C10C1540.7°90.3°
C9N4C5H29.0°0.0°
N4C9H5H6119.6°120.0°
C9C10C11C15179.8°179.7°
C9C10C11C12179.6°180.0°
C9C10C15C14178.5°179.7°
C10C9H5H6119.7°120.0°
C9C10C11H70.4°0.0°
C9C10C15H101.5°0.0°
C10C11C12H7180.0°180.0°
C10C11C12C131.5°0.0°
C11C10C15C141.3°0.5°
C11C10C9H519.0°30.0°
C11C10C9H6100.8°150.0°
C10C11C12H8178.5°180.0°
C11C10C15H10178.7°179.7°
C15C10C11C120.5°0.2°
C10C15C14C132.1°0.5°
C10C15C14H10180.0°179.7°
C15C10C9H5160.8°149.7°
C15C10C9H679.4°29.7°
C15C10C11H7179.4°179.7°
C10C15C14H9177.9°179.7°
C11C12C13H8180.0°179.9°
C11C12C13C140.7°0.0°
C11C12C13CL16178.7°180.0°
C12C13C14CL16178.1°180.0°
C12C13C14C151.1°0.2°
C13C12C11H7178.5°180.0°
C12C13C14H9178.9°180.0°
C13C14C15H9180.0°179.7°
C14C13C12H8179.4°180.0°
C13C14C15H10177.9°179.7°
CL16C13C14C15177.0°179.7°
CL16C13C12H81.3°0.0°
CL16C13C14H93.0°0.0°
H2C5C6H31.2°0.1°
H7C11C12H81.5°0.0°
H9C14C15H102.1°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon