VME
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.51Å | 1.50Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.22Å | |
| C | OXT | sing | 1.34Å | 1.25Å | |
| CB | CG1 | sing | 1.53Å | 1.52Å | |
| CB | CG2 | sing | 1.53Å | 1.54Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CG1 | HG11 | sing | 1.09Å | 1.10Å | |
| CG1 | HG12 | sing | 1.09Å | 1.10Å | |
| CG1 | HG13 | sing | 1.09Å | 1.10Å | |
| CG2 | HG21 | sing | 1.09Å | 1.10Å | |
| CG2 | HG22 | sing | 1.09Å | 1.10Å | |
| CG2 | HG23 | sing | 1.09Å | 1.10Å | |
| CM | OXT | sing | 1.45Å | 1.56Å | |
| CM | HMC1 | sing | 1.09Å | 1.10Å | |
| CM | HMC2 | sing | 1.09Å | 1.10Å | |
| CM | HMC3 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 109.4° | 109.5° |
| N | CA | CB | 109.1° | 109.5° |
| N | CA | HA | 110.2° | 109.5° |
| H | N | H2 | 109.5° | 111.0° |
| C | CA | CB | 110.6° | 109.5° |
| C | CA | HA | 108.7° | 109.5° |
| CA | C | O | 128.4° | 120.0° |
| CA | C | OXT | 113.3° | 119.9° |
| CB | CA | HA | 108.9° | 109.4° |
| CA | CB | CG1 | 110.4° | 109.5° |
| CA | CB | CG2 | 107.2° | 109.5° |
| CA | CB | HB | 110.8° | 109.5° |
| O | C | OXT | 118.3° | 120.1° |
| C | OXT | CM | 110.7° | 117.0° |
| CG1 | CB | CG2 | 110.8° | 109.5° |
| CG1 | CB | HB | 107.2° | 109.4° |
| CB | CG1 | HG11 | 109.5° | 109.4° |
| CB | CG1 | HG12 | 109.5° | 109.5° |
| CB | CG1 | HG13 | 109.5° | 109.5° |
| CG2 | CB | HB | 110.4° | 109.5° |
| CB | CG2 | HG21 | 109.5° | 109.5° |
| CB | CG2 | HG22 | 109.5° | 109.5° |
| CB | CG2 | HG23 | 109.5° | 109.5° |
| HG11 | CG1 | HG12 | 109.5° | 109.5° |
| HG11 | CG1 | HG13 | 109.4° | 109.5° |
| HG12 | CG1 | HG13 | 109.5° | 109.5° |
| HG21 | CG2 | HG22 | 109.5° | 109.4° |
| HG21 | CG2 | HG23 | 109.5° | 109.5° |
| HG22 | CG2 | HG23 | 109.5° | 109.5° |
| OXT | CM | HMC1 | 109.5° | 109.5° |
| OXT | CM | HMC2 | 109.5° | 109.5° |
| OXT | CM | HMC3 | 109.5° | 109.5° |
| HMC1 | CM | HMC2 | 109.4° | 109.4° |
| HMC1 | CM | HMC3 | 109.4° | 109.5° |
| HMC2 | CM | HMC3 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 123.9° |
| N | CA | C | CB | 120.2° | 120.0° |
| N | CA | C | HA | 120.3° | 120.0° |
| N | CA | CB | HA | 120.3° | 120.0° |
| N | CA | C | O | 3.2° | 20.0° |
| N | CA | C | OXT | 179.4° | 160.0° |
| N | CA | CB | CG1 | 61.3° | 180.0° |
| N | CA | CB | CG2 | 59.5° | 60.0° |
| N | CA | CB | HB | 179.9° | 60.0° |
| H | N | CA | C | 180.0° | 63.9° |
| H | N | CA | CB | 58.9° | 176.0° |
| H | N | CA | HA | 60.6° | 56.1° |
| H2 | N | CA | C | 60.0° | 60.0° |
| H2 | N | CA | CB | 178.9° | 60.0° |
| H2 | N | CA | HA | 59.4° | 180.0° |
| C | CA | CB | HA | 119.4° | 120.0° |
| CA | C | O | OXT | 177.3° | 180.0° |
| C | CA | CB | CG1 | 178.3° | 60.0° |
| C | CA | CB | CG2 | 60.8° | 180.0° |
| C | CA | CB | HB | 59.7° | 60.0° |
| CA | C | OXT | CM | 150.7° | 180.0° |
| CB | CA | C | O | 123.4° | 100.0° |
| CB | CA | C | OXT | 59.2° | 80.0° |
| CA | CB | CG1 | CG2 | 118.6° | 120.0° |
| CA | CB | CG1 | HB | 120.8° | 120.0° |
| CA | CB | CG2 | HB | 120.8° | 120.0° |
| CA | CB | CG1 | HG11 | 180.0° | 180.0° |
| CA | CB | CG1 | HG12 | 60.0° | 60.0° |
| CA | CB | CG1 | HG13 | 60.0° | 60.1° |
| CA | CB | CG2 | HG21 | 180.0° | 60.0° |
| CA | CB | CG2 | HG22 | 60.0° | 180.0° |
| CA | CB | CG2 | HG23 | 60.0° | 60.0° |
| HA | CA | C | O | 117.1° | 140.0° |
| HA | CA | C | OXT | 60.3° | 40.0° |
| HA | CA | CB | CG1 | 59.0° | 60.0° |
| HA | CA | CB | CG2 | 179.8° | 60.0° |
| HA | CA | CB | HB | 59.6° | 180.0° |
| O | C | OXT | CM | 27.0° | 0.0° |
| C | OXT | CM | HMC1 | 180.0° | 60.0° |
| C | OXT | CM | HMC2 | 60.0° | 60.0° |
| C | OXT | CM | HMC3 | 60.0° | 180.0° |
| CG1 | CB | CG2 | HB | 118.6° | 120.0° |
| CB | CG1 | HG11 | HG12 | 120.0° | 120.0° |
| CB | CG1 | HG11 | HG13 | 120.0° | 120.0° |
| CB | CG1 | HG12 | HG13 | 120.0° | 120.0° |
| CG1 | CB | CG2 | HG21 | 59.4° | 180.0° |
| CG1 | CB | CG2 | HG22 | 60.6° | 60.0° |
| CG1 | CB | CG2 | HG23 | 179.5° | 60.0° |
| CG2 | CB | CG1 | HG11 | 61.4° | 60.0° |
| CG2 | CB | CG1 | HG12 | 178.6° | 180.0° |
| CG2 | CB | CG1 | HG13 | 58.6° | 60.0° |
| CB | CG2 | HG21 | HG22 | 120.0° | 120.0° |
| CB | CG2 | HG21 | HG23 | 120.0° | 120.0° |
| CB | CG2 | HG22 | HG23 | 120.0° | 120.0° |
| HB | CB | CG1 | HG11 | 59.2° | 60.0° |
| HB | CB | CG1 | HG12 | 60.8° | 60.0° |
| HB | CB | CG1 | HG13 | 179.2° | 180.0° |
| HB | CB | CG2 | HG21 | 59.2° | 60.0° |
| HB | CB | CG2 | HG22 | 179.2° | 60.0° |
| HB | CB | CG2 | HG23 | 60.8° | 180.0° |
| HG11 | CG1 | HG12 | HG13 | 120.0° | 120.0° |
| HG21 | CG2 | HG22 | HG23 | 120.0° | 120.0° |
| OXT | CM | HMC1 | HMC2 | 120.0° | 120.0° |
| OXT | CM | HMC1 | HMC3 | 120.0° | 120.0° |
| OXT | CM | HMC2 | HMC3 | 120.0° | 120.0° |
| HMC1 | CM | HMC2 | HMC3 | 120.0° | 120.0° |
