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VMD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C31C29sing1.53Å1.64Å
C30C29sing1.53Å1.51Å
O32C29sing1.44Å1.42Å
O32C26sing1.45Å1.43Å
C29O28sing1.44Å1.43Å
C26C25sing1.53Å1.13Å
C26C27sing1.54Å1.53Å
O28C27sing1.44Å1.43Å
C27C2sing1.53Å1.52Å
C5N4sing1.47Å1.50Å
C5C6sing1.53Å1.01Å
N4C3sing1.47Å1.50Å
N23N24doub1.29Å1.31ÅAromatic
N23C10sing1.34Å1.36ÅAromatic
C2C3sing1.53Å1.53Å
C2O1sing1.43Å1.43Å
C11C10sing1.51Å1.49Å
C11N12sing1.47Å1.42Å
N24N8sing1.29Å1.34ÅAromatic
C6C7sing1.53Å1.52Å
C10C9doub1.35Å1.37ÅAromatic
N12C13sing1.40Å1.38Å
N8C9sing1.35Å1.34ÅAromatic
N8C7sing1.46Å1.46Å
C13C14doub1.39Å1.39ÅAromatic
C13C22sing1.39Å1.38ÅAromatic
C14C15sing1.38Å1.37ÅAromatic
C22C21doub1.38Å1.38ÅAromatic
C15C16doub1.38Å1.39ÅAromatic
C21C16sing1.38Å1.39ÅAromatic
C16S17sing1.76Å1.77Å
N19S17sing1.66Å1.57Å
O18S17doub1.42Å1.44Å
S17O20doub1.42Å1.45Å
O1H1sing0.97Å0.95Å
C14H2sing1.08Å1.08Å
C15H3sing1.08Å1.08Å
C21H4sing1.08Å1.08Å
C22H5sing1.08Å1.08Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C9H8sing1.08Å1.08Å
C11H9sing1.09Å1.10Å
C11H10sing1.09Å1.10Å
N4H11sing1.01Å1.00Å
C2H13sing1.09Å1.10Å
C3H14sing1.09Å1.10Å
C3H15sing1.09Å1.10Å
C5H16sing1.09Å1.10Å
C5H17sing1.09Å1.10Å
C6H18sing1.09Å1.10Å
C6H19sing1.09Å1.10Å
N12H20sing0.97Å1.00Å
N19H21sing0.97Å1.00Å
N19H22sing0.97Å1.00Å
C25H23sing1.09Å1.10Å
C25H24sing1.09Å1.10Å
C25H25sing1.09Å1.10Å
C26H26sing1.09Å1.10Å
C27H27sing1.09Å1.10Å
C30H28sing1.09Å1.10Å
C30H29sing1.09Å1.10Å
C30H30sing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C31H32sing1.09Å1.10Å
C31H33sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C31C29C30102.5°110.1°
C31C29O32106.9°110.2°
C31C29O28123.4°110.1°
C29C31H31109.5°109.5°
C29C31H32109.4°109.5°
C29C31H33109.5°109.5°
C30C29O32109.5°110.1°
C30C29O28109.5°110.1°
C29C30H28109.5°109.5°
C29C30H29109.5°109.5°
C29C30H30109.4°109.5°
C29O32C26107.7°103.2°
O32C29O28104.6°106.1°
O32C26C2598.6°110.7°
O32C26C27104.8°102.9°
O32C26H26104.7°110.9°
C29O28C27107.7°107.1°
C25C26C27133.2°110.7°
C26C25H23109.5°109.4°
C26C25H24109.5°109.4°
C26C25H25109.5°109.5°
C25C26H26108.7°110.6°
C26C27O28104.6°105.1°
C26C27C2113.6°110.3°
C27C26H26103.8°110.7°
C26C27H27108.7°110.3°
O28C27C2111.0°110.4°
O28C27H27110.1°110.4°
C27C2C3111.0°109.4°
C27C2O1109.9°109.5°
C27C2H13108.4°109.5°
C2C27H27108.9°110.3°
N4C5C6128.6°109.5°
C5N4C3111.2°111.0°
C5N4H11109.1°111.1°
N4C5H16104.5°109.5°
N4C5H17104.5°109.5°
C5C6C7122.4°109.5°
C6C5H16104.5°109.4°
C6C5H17104.5°109.5°
C5C6H18106.2°109.5°
C5C6H19106.2°109.4°
N4C3C2111.8°109.5°
C3N4H11109.0°111.0°
N4C3H14108.9°109.4°
N4C3H15108.9°109.5°
N24N23C10109.2°108.9°
N23N24N8107.0°110.2°
N23C10C11121.8°126.8°
N23C10C9108.1°106.5°
C3C2O1109.5°109.5°
C3C2H13108.3°109.5°
C2C3H14108.9°109.5°
C2C3H15108.9°109.5°
C2O1H1109.5°114.1°
O1C2H13109.6°109.5°
C10C11N12111.9°109.5°
C11C10C9130.0°126.7°
C10C11H9108.9°109.5°
C10C11H10108.8°109.5°
C11N12C13121.4°120.0°
N12C11H9108.8°109.4°
N12C11H10108.9°109.5°
C11N12H20106.4°120.0°
N24N8C9110.9°108.3°
N24N8C7120.0°125.9°
C6C7N8110.0°109.5°
C6C7H6109.3°109.4°
C6C7H7109.3°109.5°
C7C6H18106.2°109.5°
C7C6H19106.2°109.5°
C10C9N8104.9°106.1°
C10C9H8127.6°126.9°
N12C13C14119.5°120.1°
N12C13C22121.1°120.1°
C13N12H20106.4°120.0°
C9N8C7128.6°125.8°
N8C9H8127.5°126.9°
N8C7H6109.4°109.5°
N8C7H7109.4°109.5°
C14C13C22119.3°119.8°
C13C14C15121.0°119.9°
C13C14H2119.5°120.0°
C13C22C21120.3°120.0°
C13C22H5119.9°120.0°
C14C15C16119.3°120.1°
C15C14H2119.5°120.1°
C14C15H3120.3°120.0°
C22C21C16119.9°120.1°
C22C21H4120.0°119.9°
C21C22H5119.8°120.1°
C15C16C21120.1°120.1°
C15C16S17120.3°119.9°
C16C15H3120.3°119.9°
C21C16S17119.6°119.9°
C16C21H4120.0°120.0°
C16S17N19108.1°107.2°
C16S17O18106.1°106.4°
C16S17O20105.8°106.4°
N19S17O18107.9°106.4°
N19S17O20111.1°106.4°
S17N19H21109.5°120.1°
S17N19H22109.5°120.0°
O18S17O20117.5°123.2°
H6C7H7109.4°109.4°
H9C11H10109.5°109.5°
H14C3H15109.4°109.5°
H16C5H17109.5°109.4°
H18C6H19109.4°109.4°
H21N19H22109.5°119.9°
H23C25H24109.5°109.5°
H23C25H25109.4°109.5°
H24C25H25109.5°109.5°
H28C30H29109.4°109.5°
H28C30H30109.5°109.5°
H29C30H30109.5°109.4°
H31C31H32109.5°109.5°
H31C31H33109.5°109.5°
H32C31H33109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C31C29C30O32113.2°121.7°
C31C29C30O28132.6°121.6°
C31C29O32O28132.3°119.2°
C31C29O32C26163.2°158.4°
C31C29O28C27154.7°144.3°
C31C29C30H28180.0°178.4°
C31C29C30H2960.0°58.4°
C31C29C30H3060.0°61.6°
C29C31H31H32120.0°120.0°
C29C31H31H33120.0°120.0°
C29C31H32H33120.0°120.0°
C30C29O32O28117.3°119.2°
C30C29O32C2686.5°80.0°
C30C29O28C2784.7°94.1°
C29C30H28H29120.0°120.0°
C29C30H28H30120.0°120.0°
C29C30H29H30120.0°120.0°
C30C29C31H31180.0°61.6°
C30C29C31H3260.0°58.4°
C30C29C31H3360.0°178.4°
C29O32C26C25156.5°155.0°
C29O32C26C2717.4°36.6°
O32C29O28C2732.6°25.1°
C29O32C26H2691.5°81.8°
O32C29C30H2866.8°56.7°
O32C29C30H2953.2°63.3°
O32C29C30H30173.2°176.7°
O32C29C31H3164.9°176.7°
O32C29C31H32175.1°63.2°
O32C29C31H3355.2°56.8°
C26O32C29O2830.8°39.2°
O32C26C25C27119.7°113.5°
O32C26C25H26108.8°123.3°
O32C26C27H26109.6°118.5°
O32C26C27O282.5°21.8°
O32C26C27C2123.6°97.2°
O32C26C25H23180.0°53.5°
O32C26C25H2460.0°66.5°
O32C26C25H2560.0°173.5°
O32C26C27H27115.1°140.8°
C29O28C27C2621.5°1.7°
C29O28C27C2144.3°120.6°
C29O28C27H2795.1°117.2°
O28C29C30H2847.4°60.0°
O28C29C30H29167.4°180.0°
O28C29C30H3072.6°60.0°
O28C29C31H3156.2°60.0°
O28C29C31H3263.8°180.0°
O28C29C31H33176.2°60.0°
C25C26C27H26133.1°123.1°
C25C26C27O28114.9°140.2°
C25C26C27C26.2°21.2°
C26C25H23H24120.0°119.9°
C26C25H23H25120.0°120.0°
C26C25H24H25120.0°120.0°
C25C26C27H27127.6°100.8°
C26C27O28C2122.9°118.9°
C26C27O28H27116.6°118.9°
C26C27C2H27121.2°122.1°
C26C27C2C350.8°175.0°
C26C27C2O1172.0°55.1°
C26C27C2H1368.1°65.0°
C27C26C25H2360.3°60.0°
C27C26C25H2459.7°180.0°
C27C26C25H25179.8°60.0°
O28C27C2H27121.3°122.2°
O28C27C2C3168.3°59.3°
O28C27C2O170.4°60.7°
O28C27C2H1349.4°179.3°
O28C27C26H26112.0°96.7°
C27C2C3N449.4°175.0°
C27C2C3O1121.5°120.0°
C27C2C3H13119.0°120.0°
C27C2O1H13119.1°120.0°
C27C2O1H1180.0°59.9°
C27C2C3H14169.8°65.0°
C27C2C3H1571.0°55.0°
C2C27C26H26126.8°144.3°
N4C5C6H16122.5°120.0°
N4C5C6H17122.5°120.1°
C5N4C3H11120.2°124.0°
C5N4C3C2122.9°180.0°
N4C5C6C789.6°180.0°
C5N4C3H14116.8°60.0°
C5N4C3H152.5°60.0°
N4C5H16H17111.4°120.0°
N4C5C6H1832.1°59.9°
N4C5C6H19148.6°60.0°
C6C5N4C377.5°180.0°
C5C6C7H18121.8°120.1°
C5C6C7H19121.8°120.0°
C5C6C7N888.4°180.0°
C5C6C7H631.7°60.0°
C5C6C7H7151.4°59.9°
C6C5N4H11162.3°56.0°
C6C5H16H17111.4°120.0°
C5C6H18H19114.2°120.0°
N4C3C2H14120.4°120.0°
N4C3C2H15120.4°120.0°
N4C3C2O1170.9°65.0°
N4C3C2H1369.6°55.0°
N4C3H14H15118.9°120.0°
C3N4C5H16160.0°60.0°
C3N4C5H1745.1°60.0°
N24N23C10C11177.5°179.8°
N24N23C10C90.1°0.2°
N23N24N8C90.1°0.2°
N23N24N8C7172.1°179.8°
N23C10C11C9176.8°180.0°
N23C10C11N12179.0°85.0°
C10N23N24N80.0°0.0°
N23C10C9N80.1°0.3°
N23C10C9H8179.9°180.0°
N23C10C11H960.6°35.0°
N23C10C11H1058.6°155.0°
C3C2O1H13118.7°120.0°
C3C2O1H157.8°60.0°
C2C3N4H112.6°56.0°
C2C3H14H15118.9°120.0°
C3C2C27H2770.4°62.9°
O1C2C3H1468.7°54.9°
O1C2C3H1550.6°175.0°
O1C2C27H2750.8°177.1°
C10C11N12H9120.4°119.9°
C10C11N12H10120.4°120.1°
C10C11N12C13142.5°180.0°
C11C10C9N8177.3°179.7°
C11C10C9H82.7°0.0°
C10C11H9H10118.8°120.1°
C10C11N12H2020.9°0.1°
N12C11C10C92.2°95.1°
C11N12C13H20121.7°180.0°
C11N12C13C14161.6°179.9°
C11N12C13C2221.7°0.3°
N12C11H9H10118.9°120.0°
N24N8C7C676.2°55.0°
N24N8C9C100.1°0.3°
N24N8C9C7171.3°180.0°
N24N8C7H643.9°175.0°
N24N8C7H7163.7°65.0°
N24N8C9H8179.9°180.0°
C6C7N8C994.4°125.0°
C6C7N8H6120.1°120.0°
C6C7N8H7120.1°120.0°
C6C7H6H7119.7°120.0°
C7C6C5H16147.9°60.0°
C7C6C5H1732.9°60.0°
C7C6H18H19114.2°120.0°
C10C9N8H8180.0°179.7°
C10C9N8C7171.2°179.7°
C9C10C11H9122.6°145.0°
C9C10C11H10118.2°25.0°
N12C13C14C22176.8°179.8°
N12C13C14C15176.3°179.7°
N12C13C22C21176.1°179.7°
N12C13C14H23.7°0.3°
N12C13C22H53.9°0.2°
C13N12C11H997.1°60.0°
C13N12C11H1022.2°60.0°
C9N8C7H6145.5°5.0°
C9N8C7H725.7°115.0°
N8C7H6H7119.8°120.0°
C7N8C9H88.8°0.0°
N8C7C6H18149.8°60.0°
N8C7C6H1933.4°60.0°
C13C14C15H2180.0°180.0°
C14C13C22C210.6°0.1°
C13C14C15C160.3°0.0°
C13C14C15H3179.8°180.0°
C14C13C22H5179.4°180.0°
C14C13N12H2076.8°0.0°
C22C13C14C150.5°0.1°
C13C22C21H5180.0°179.9°
C13C22C21C160.5°0.0°
C22C13C14H2179.5°179.9°
C13C22C21H4179.5°180.0°
C22C13N12H2099.9°179.8°
C14C15C16H3180.0°180.0°
C14C15C16C210.1°0.0°
C14C15C16S17179.8°180.0°
C22C21C16C150.2°0.0°
C22C21C16H4180.0°180.0°
C22C21C16S17179.7°180.0°
C15C16C21S17179.9°179.9°
C15C16S17N19129.5°90.0°
C15C16S17O1814.1°23.5°
C15C16S17O20111.4°156.5°
C16C15C14H2179.7°180.0°
C15C16C21H4179.8°180.0°
C21C16S17N1950.4°90.1°
C21C16S17O18165.9°156.4°
C21C16S17O2068.6°23.5°
C21C16C15H3179.9°180.0°
C16C21C22H5179.5°179.9°
C16S17N19O18114.3°113.5°
C16S17N19O20115.6°113.5°
C16S17O18O20118.0°122.9°
S17C16C15H30.2°0.0°
S17C16C21H40.3°0.0°
C16S17N19H21180.0°0.1°
C16S17N19H2260.0°180.0°
N19S17O18O20126.4°123.0°
S17N19H21H22120.0°179.9°
O18S17N19H2165.7°113.5°
O18S17N19H2254.2°66.5°
O20S17N19H2164.4°113.5°
O20S17N19H22175.7°66.4°
H1O1C2H1360.9°180.0°
H2C14C15H30.3°0.0°
H4C21C22H50.4°0.1°
H6C7C6H1890.1°60.1°
H6C7C6H19153.5°180.0°
H7C7C6H1829.7°180.0°
H7C7C6H1986.8°60.0°
H9C11N12H20141.2°120.0°
H10C11N12H2099.5°120.0°
H11N4C3H14123.0°176.0°
H11N4C3H15117.7°64.0°
H11N4C5H1639.8°63.9°
H11N4C5H1775.2°176.1°
H13C2C3H1450.8°175.0°
H13C2C3H15170.0°65.0°
H13C2C27H27170.6°57.1°
H16C5C6H1890.3°60.0°
H16C5C6H1926.1°180.0°
H17C5C6H18154.7°180.0°
H17C5C6H1988.9°60.0°
H23C25H24H25120.0°120.1°
H23C25C26H2671.2°176.8°
H24C25C26H26168.8°56.8°
H25C25C26H2648.8°63.1°
H26C26C27H275.5°22.3°
H28C30H29H30120.0°120.0°
H31C31H32H33120.0°120.0°

224931

PDB entries from 2024-09-11

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