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SummaryGeometryRelated PDB entries

VM1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C1BO1Adoub1.21Å1.25Å
C1GC1Bsing1.48Å1.53Å
C1BO1Csing1.35Å1.25Å
O1CHO1Csing0.97Å0.95Å
C1ES1Dsing1.76Å1.70ÅAromatic
S1DC1Jsing1.76Å1.71ÅAromatic
C1EC1Fdoub1.34Å1.33ÅAromatic
C1EH1Esing1.08Å1.08Å
C1FC1Ksing1.38Å1.34ÅAromatic
C1FH1Fsing1.08Å1.08Å
C1HC1Gdoub1.40Å1.39ÅAromatic
C1LC1Gsing1.40Å1.39ÅAromatic
C1IC1Hsing1.40Å1.39ÅAromatic
C1HH1Hsing1.08Å1.08Å
C1JC1Ising1.48Å1.39ÅAromatic
C1NC1Idoub1.40Å1.39ÅAromatic
C1JC1Kdoub1.35Å1.33ÅAromatic
C1KH1Ksing1.08Å1.08Å
N1MC1Ldoub1.32Å1.32ÅAromatic
C1LH1Lsing1.08Å1.08Å
C1NN1Msing1.32Å1.32ÅAromatic
C1NH1Nsing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O1AC1BC1G117.6°120.0°
O1AC1BO1C124.3°120.0°
C1GC1BO1C118.1°120.0°
C1BC1GC1H119.8°120.5°
C1BC1GC1L120.8°120.5°
C1BO1CHO1C109.5°117.0°
C1ES1DC1J94.4°91.0°
S1DC1EC1F106.5°109.8°
S1DC1EH1E126.8°125.1°
S1DC1JC1I123.3°125.3°
S1DC1JC1K107.1°109.4°
C1FC1EH1E126.7°125.1°
C1EC1FC1K116.8°115.1°
C1EC1FH1F121.7°122.4°
C1KC1FH1F121.6°122.5°
C1FC1KC1J115.3°114.7°
C1FC1KH1K122.3°122.7°
C1HC1GC1L119.4°119.0°
C1GC1HC1I118.2°118.1°
C1GC1HH1H120.9°121.0°
C1GC1LN1M120.6°120.8°
C1GC1LH1L119.7°119.6°
C1IC1HH1H120.9°120.9°
C1HC1IC1J120.0°120.5°
C1HC1IC1N119.2°119.0°
C1JC1IC1N120.7°120.5°
C1IC1JC1K129.5°125.2°
C1IC1NN1M120.7°120.9°
C1IC1NH1N119.7°119.5°
C1JC1KH1K122.4°122.6°
N1MC1LH1L119.7°119.6°
C1LN1MC1N121.8°122.1°
N1MC1NH1N119.6°119.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O1AC1BC1GO1C179.9°179.7°
O1AC1BO1CHO1C0.0°0.1°
O1AC1BC1GC1H3.0°0.1°
O1AC1BC1GC1L177.5°179.7°
C1GC1BO1CHO1C180.0°179.8°
C1BC1GC1HC1L179.6°179.6°
C1BC1GC1HC1I179.5°180.0°
C1BC1GC1HH1H0.5°0.1°
C1BC1GC1LN1M179.5°180.0°
C1BC1GC1LH1L0.5°0.1°
O1CC1BC1GC1H177.0°179.8°
O1CC1BC1GC1L2.6°0.6°
S1DC1EC1FH1E180.0°179.9°
S1DC1EC1FC1K0.1°0.0°
S1DC1EC1FH1F179.9°180.0°
C1ES1DC1JC1I177.9°180.0°
C1ES1DC1JC1K0.1°0.1°
C1JS1DC1EC1F0.1°0.0°
C1JS1DC1EH1E179.9°180.0°
S1DC1JC1KC1F0.0°0.1°
S1DC1JC1IC1H163.4°0.0°
S1DC1JC1IC1K177.5°179.9°
S1DC1JC1IC1N15.1°180.0°
S1DC1JC1KH1K180.0°180.0°
C1EC1FC1KH1F180.0°180.0°
C1EC1FC1KC1J0.1°0.0°
C1EC1FC1KH1K179.9°180.0°
H1EC1EC1FC1K179.8°179.9°
H1EC1EC1FH1F0.2°0.0°
C1FC1KC1JC1I177.8°180.0°
C1FC1KC1JH1K180.0°179.9°
H1FC1FC1KC1J179.9°180.0°
H1FC1FC1KH1K0.1°0.1°
C1GC1HC1IH1H180.0°179.9°
C1GC1HC1IC1J178.5°180.0°
C1GC1HC1IC1N0.1°0.0°
C1HC1GC1LN1M0.0°0.3°
C1HC1GC1LH1L179.9°179.7°
C1LC1GC1HC1I0.1°0.3°
C1LC1GC1HH1H179.9°179.8°
C1GC1LN1MH1L180.0°180.0°
C1GC1LN1MC1N0.1°0.0°
C1HC1IC1JC1N178.5°180.0°
C1HC1IC1JC1K14.1°180.0°
C1HC1IC1NN1M0.0°0.3°
C1HC1IC1NH1N180.0°179.9°
H1HC1HC1IC1J1.5°0.0°
H1HC1HC1IC1N179.9°180.0°
C1IC1JC1KH1K2.2°0.1°
C1JC1IC1NN1M178.6°179.7°
C1JC1IC1NH1N1.4°0.1°
C1NC1IC1JC1K167.4°0.0°
C1IC1NN1MC1L0.1°0.3°
C1IC1NN1MH1N180.0°179.8°
C1LN1MC1NH1N179.9°179.9°
H1LC1LN1MC1N180.0°180.0°

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PDB entries from 2024-07-17

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