Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VL8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C4Nsing1.46Å1.45Å
OC3doub1.21Å1.23Å
NC3sing1.35Å1.33Å
C3C2sing1.51Å1.52Å
C1C2sing1.53Å1.52Å
C1Csing1.53Å1.50Å
C2O1sing1.43Å1.43Å
CLC9sing1.74Å1.73Å
C10C9doub1.38Å1.38ÅAromatic
C10C5sing1.39Å1.39ÅAromatic
O1C5sing1.36Å1.37Å
C9C8sing1.39Å1.39ÅAromatic
C5C6doub1.39Å1.38ÅAromatic
C8CL1sing1.74Å1.74Å
C8C7doub1.38Å1.38ÅAromatic
C6C7sing1.38Å1.38ÅAromatic
C7H1sing1.08Å1.08Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C6H4sing1.08Å1.08Å
C4H5sing1.09Å1.10Å
C4H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C2H8sing1.09Å1.10Å
C10H9sing1.08Å1.08Å
CH10sing1.09Å1.10Å
CH11sing1.09Å1.10Å
CH12sing1.09Å1.10Å
NH13sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4NC3122.1°120.0°
NC4H5109.5°109.5°
NC4H6109.5°109.5°
NC4H7109.5°109.5°
C4NH13119.0°120.0°
OC3N123.3°120.0°
OC3C2119.4°120.0°
NC3C2117.3°120.0°
C3NH13119.0°120.0°
C3C2C1107.8°109.5°
C3C2O1112.3°109.4°
C3C2H8109.8°109.5°
C2C1C109.7°109.4°
C1C2O1105.8°109.4°
C2C1H2109.4°109.5°
C2C1H3109.4°109.5°
C1C2H8109.9°109.5°
CC1H2109.4°109.5°
CC1H3109.4°109.5°
C1CH10109.5°109.4°
C1CH11109.4°109.5°
C1CH12109.4°109.5°
C2O1C5116.3°116.9°
O1C2H8111.1°109.5°
CLC9C10118.7°120.0°
CLC9C8120.9°120.0°
C9C10C5119.3°119.9°
C10C9C8120.4°120.1°
C9C10H9120.3°120.0°
C10C5O1123.7°120.0°
C10C5C6120.5°119.9°
C5C10H9120.4°120.1°
O1C5C6115.8°120.1°
C9C8CL1121.1°120.0°
C9C8C7119.8°120.0°
C5C6C7119.7°120.0°
C5C6H4120.1°120.0°
CL1C8C7119.1°120.0°
C8C7C6120.2°120.1°
C8C7H1119.9°119.9°
C6C7H1119.9°120.0°
C7C6H4120.1°120.0°
H2C1H3109.4°109.4°
H5C4H6109.5°109.4°
H5C4H7109.4°109.4°
H6C4H7109.5°109.5°
H10CH11109.5°109.5°
H10CH12109.5°109.5°
H11CH12109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4NC3O6.7°0.0°
C4NC3H13180.0°180.0°
C4NC3C2173.5°180.0°
NC4H5H6120.0°120.0°
NC4H5H7120.0°120.0°
NC4H6H7120.0°120.0°
OC3NC2179.8°180.0°
OC3C2C180.4°115.0°
OC3C2O1163.5°5.0°
OC3C2H839.3°125.0°
OC3NH13173.3°180.0°
NC3C2C199.4°65.0°
NC3C2O116.8°175.0°
C3NC4H5180.0°180.0°
C3NC4H660.0°60.0°
C3NC4H760.0°60.0°
NC3C2H8140.9°55.0°
C3C2C1O1120.3°119.9°
C3C2C1H8119.6°120.0°
C3C2C1C178.9°175.0°
C3C2O1H8123.4°120.0°
C3C2O1C558.8°146.1°
C3C2C1H258.9°55.0°
C3C2C1H361.0°64.9°
C2C3NH136.5°0.0°
C2C1CH2120.1°120.0°
C2C1CH3120.1°120.0°
C1C2O1H8119.2°120.1°
C1C2O1C5176.1°94.0°
C2C1H2H3119.9°120.0°
C2C1CH10180.0°180.0°
C2C1CH1160.0°60.0°
C2C1CH1260.0°60.0°
CC1C2O160.8°65.0°
CC1H2H3119.9°120.0°
CC1C2H859.3°55.0°
C1CH10H11120.0°120.0°
C1CH10H12120.0°120.0°
C1CH11H12119.9°120.0°
C2O1C5C106.1°177.2°
C2O1C5C6172.8°2.6°
O1C2C1H2179.2°174.9°
O1C2C1H359.3°55.0°
CLC9C10C8178.0°180.0°
CLC9C10C5177.1°179.8°
CLC9C8CL16.6°0.0°
CLC9C8C7176.3°179.9°
CLC9C10H92.8°0.0°
C9C10C5H9180.0°179.8°
C9C10C5O1178.6°179.7°
C9C10C5C60.2°0.2°
C10C9C8CL1175.5°180.0°
C10C9C8C71.7°0.0°
C10C5O1C6178.9°179.9°
C5C10C9C80.9°0.2°
C10C5C6C70.5°0.1°
C10C5C6H4179.6°180.0°
O1C5C6C7178.5°180.0°
O1C5C6H41.5°0.1°
C5O1C2H864.6°26.1°
O1C5C10H91.4°0.1°
C9C8CL1C7177.2°180.0°
C9C8C7C61.4°0.3°
C9C8C7H1178.6°180.0°
C8C9C10H9179.2°180.0°
C5C6C7C80.4°0.3°
C5C6C7H4180.0°179.9°
C5C6C7H1179.6°180.0°
C6C5C10H9179.8°180.0°
CL1C8C7C6175.8°179.7°
CL1C8C7H14.2°0.1°
C8C7C6H1180.0°179.6°
C8C7C6H4179.6°179.8°
H1C7C6H40.4°0.1°
H2C1C2H860.8°65.0°
H2C1CH1059.9°60.0°
H2C1CH11179.9°180.0°
H2C1CH1260.1°60.0°
H3C1C2H8179.3°175.1°
H3C1CH1059.9°60.0°
H3C1CH1160.1°60.0°
H3C1CH12180.0°180.0°
H5C4H6H7120.0°119.9°
H5C4NH130.0°0.0°
H6C4NH13120.1°120.0°
H7C4NH13120.0°120.0°
H10CH11H12120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon