Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VJ4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6C6sing1.43Å1.44Å
C6C5sing1.53Å1.53Å
O9P1doub1.48Å1.51Å
C5O5sing1.43Å1.43Å
C5C4sing1.53Å1.53Å
O5C1sing1.43Å1.43Å
O8P1sing1.61Å1.51Å
P1O4sing1.61Å1.56Å
P1O7sing1.61Å1.51Å
O4C4sing1.43Å1.43Å
C4C3sing1.53Å1.53Å
C1C2sing1.53Å1.52Å
C3C2sing1.53Å1.52Å
C3O3sing1.43Å1.43Å
C2N2sing1.47Å1.45Å
N2C13sing1.47Å1.43Å
O2C13sing1.43Å1.25Å
C13C14sing1.53Å1.51Å
O10C12doub1.21Å1.25Å
C12O11sing1.34Å1.37Å
C12C21sing1.51Å1.51Å
C14C15sing1.53Å1.53Å
O11C15sing1.45Å1.44Å
C21C31sing1.53Å1.52Å
C15C16sing1.53Å1.52Å
C16C17sing1.53Å1.52Å
C31C41sing1.53Å1.52Å
C17C18sing1.53Å1.52Å
C18C7sing1.53Å1.52Å
C41C51sing1.53Å1.52Å
C7C8sing1.53Å1.52Å
C8C9sing1.53Å1.53Å
C9C10sing1.53Å1.52Å
C10C11sing1.53Å1.52Å
N2HN21sing1.01Å1.00Å
O6HO6sing0.97Å0.95Å
C13H37sing1.09Å1.10Å
C14H38sing1.09Å1.10Å
C14H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C16H8sing1.09Å1.10Å
C16H9sing1.09Å1.10Å
O7H10sing0.97Å0.95Å
C17H11sing1.09Å1.10Å
C17H12sing1.09Å1.10Å
O8H13sing0.97Å0.95Å
C18H14sing1.09Å1.10Å
C18H15sing1.09Å1.10Å
C7H16sing1.09Å1.10Å
C7H17sing1.09Å1.10Å
C8H18sing1.09Å1.10Å
C8H19sing1.09Å1.10Å
C9H20sing1.09Å1.10Å
C9H21sing1.09Å1.10Å
C10H22sing1.09Å1.10Å
C10H23sing1.09Å1.10Å
C11H24sing1.09Å1.10Å
C11H25sing1.09Å1.10Å
C11H26sing1.09Å1.10Å
O2H27sing0.97Å0.95Å
C21H28sing1.09Å1.10Å
C21H29sing1.09Å1.10Å
C31H30sing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C41H32sing1.09Å1.10Å
C41H33sing1.09Å1.10Å
C51H34sing1.09Å1.10Å
C51H35sing1.09Å1.10Å
C51H36sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
C1O1sing1.43Å1.37Å
O1H39sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6C6C5109.1°109.5°
C6O6HO6109.5°114.0°
O6C6H61109.6°109.5°
O6C6H62109.6°109.5°
C6C5O5108.6°109.4°
C6C5C4113.1°109.5°
C6C5H5107.9°109.5°
C5C6H61109.6°109.5°
C5C6H62109.6°109.4°
O9P1O8109.3°109.5°
O9P1O4104.9°109.5°
O9P1O7109.5°109.5°
O5C5C4109.8°109.4°
C5O5C1114.4°114.1°
O5C5H5109.3°109.5°
C5C4O4110.5°109.5°
C5C4C3110.1°109.2°
C5C4H4108.3°109.6°
C4C5H5108.0°109.5°
O5C1C2111.5°109.4°
O5C1H1105.7°109.5°
O5C1O193.1°109.5°
O8P1O4105.6°109.5°
O8P1O7109.2°109.4°
P1O8H13109.5°114.0°
O4P1O7118.1°109.4°
P1O4C4128.9°123.0°
P1O7H10109.5°114.0°
O4C4C3110.0°109.5°
O4C4H4109.6°109.5°
C4C3C2109.3°109.0°
C4C3O3110.7°109.6°
C4C3H3108.6°109.6°
C3C4H4108.3°109.5°
C1C2C3110.2°109.2°
C1C2N2109.7°109.5°
C2C1H1104.7°109.5°
C1C2H2108.4°109.5°
C2C1O1133.0°109.5°
C2C3O3109.6°109.5°
C3C2N2110.6°109.5°
C3C2H2108.5°109.6°
C2C3H3108.7°109.5°
C3O3HO3109.5°114.0°
O3C3H3109.9°109.6°
C2N2C13137.0°111.0°
C2N2HN21102.2°111.0°
N2C2H2109.4°109.6°
N2C13O299.5°109.5°
N2C13C14120.0°109.4°
C13N2HN21102.2°111.1°
N2C13H37105.1°109.4°
O2C13C14119.6°109.5°
O2C13H37107.3°109.5°
C13O2H27109.5°114.0°
C13C14C15111.8°109.4°
C14C13H37104.2°109.5°
C13C14H38108.9°109.5°
C13C14H6108.9°109.5°
O10C12O11134.2°120.0°
O10C12C21119.0°120.0°
O11C12C21104.8°120.0°
C12O11C15168.8°117.0°
C12C21C31109.1°109.5°
C12C21H28109.6°109.5°
C12C21H29109.6°109.5°
C14C15O11110.1°109.5°
C14C15C16110.4°109.4°
C15C14H38108.9°109.5°
C15C14H6108.9°109.5°
C14C15H7108.4°109.5°
O11C15C16109.7°109.5°
O11C15H7109.7°109.5°
C21C31C41110.9°109.5°
C31C21H28109.6°109.5°
C31C21H29109.6°109.5°
C21C31H30109.1°109.4°
C21C31H31109.1°109.4°
C15C16C17111.4°109.4°
C16C15H7108.5°109.5°
C15C16H8109.0°109.5°
C15C16H9109.0°109.5°
C16C17C18110.7°109.5°
C17C16H8109.0°109.5°
C17C16H9109.0°109.4°
C16C17H11109.2°109.5°
C16C17H12109.2°109.5°
C31C41C51110.4°109.5°
C41C31H30109.1°109.5°
C41C31H31109.1°109.5°
C31C41H32109.2°109.5°
C31C41H33109.2°109.5°
C17C18C7110.9°109.5°
C18C17H11109.2°109.4°
C18C17H12109.2°109.4°
C17C18H14109.1°109.5°
C17C18H15109.1°109.5°
C18C7C8111.0°109.5°
C7C18H14109.1°109.5°
C7C18H15109.1°109.5°
C18C7H16109.1°109.5°
C18C7H17109.1°109.5°
C51C41H32109.3°109.4°
C51C41H33109.2°109.5°
C41C51H34109.5°109.5°
C41C51H35109.5°109.5°
C41C51H36109.4°109.4°
C7C8C9110.7°109.5°
C8C7H16109.1°109.4°
C8C7H17109.1°109.5°
C7C8H18109.2°109.5°
C7C8H19109.2°109.5°
C8C9C10111.2°109.5°
C9C8H18109.2°109.5°
C9C8H19109.2°109.5°
C8C9H20109.0°109.5°
C8C9H21109.0°109.5°
C9C10C11110.8°109.5°
C10C9H20109.0°109.5°
C10C9H21109.0°109.5°
C9C10H22109.1°109.5°
C9C10H23109.1°109.5°
C11C10H22109.2°109.5°
C11C10H23109.2°109.5°
C10C11H24109.5°109.5°
C10C11H25109.4°109.5°
C10C11H26109.5°109.5°
H38C14H6109.5°109.5°
H8C16H9109.5°109.5°
H11C17H12109.5°109.5°
H14C18H15109.5°109.5°
H16C7H17109.5°109.5°
H18C8H19109.4°109.5°
H20C9H21109.5°109.5°
H22C10H23109.5°109.5°
H24C11H25109.4°109.5°
H24C11H26109.5°109.5°
H25C11H26109.5°109.5°
H28C21H29109.4°109.4°
H30C31H31109.5°109.5°
H32C41H33109.4°109.4°
H34C51H35109.5°109.5°
H34C51H36109.5°109.4°
H35C51H36109.5°109.5°
H1C1O1106.3°109.5°
H61C6H62109.5°109.4°
C1O1H39109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6C6C5H61119.9°120.0°
O6C6C5H62120.0°120.0°
O6C6C5O546.9°65.0°
O6C6C5C4169.0°175.1°
O6C6C5H571.5°55.0°
O6C6H61H62120.2°120.0°
C6C5O5C4124.1°120.0°
C6C5O5H5117.5°120.1°
C6C5C4H5119.4°120.1°
C6C5O5C1177.5°178.9°
C6C5C4O459.8°62.6°
C6C5C4C3178.6°177.6°
C5C6O6HO6180.0°180.0°
C6C5C4H460.3°57.6°
C5C6H61H62120.2°120.0°
O9P1O8O4112.4°120.1°
O9P1O8O7119.7°120.0°
O9P1O4O7122.2°120.0°
O9P1O4C472.7°55.0°
O9P1O7H100.0°60.0°
O9P1O8H130.0°180.0°
O5C5C4H5119.1°120.0°
O5C5C4O4178.8°177.5°
O5C5C4C357.1°57.6°
C5O5C1C257.4°61.1°
C5O5C1H155.7°58.9°
O5C5C4H461.2°62.3°
O5C5C6H6173.0°55.0°
O5C5C6H62166.9°175.0°
C5O5C1O1163.6°178.9°
C4C5O5C158.3°61.1°
C5C4O4P1131.9°120.3°
C5C4O4C3121.7°119.7°
C5C4O4H4119.3°120.3°
C5C4C3H4118.3°120.0°
C5C4C3C256.4°57.0°
C5C4C3O3177.2°176.8°
C5C4C3H362.0°62.9°
C4C5C6H6149.1°64.9°
C4C5C6H6271.0°55.1°
O5C1C2H1113.8°120.0°
O5C1C2O1116.4°120.0°
O5C1C2C354.4°57.6°
O5C1C2N2176.4°177.5°
O5C1H1O198.1°120.0°
O5C1C2H264.2°62.4°
C1O5C5H560.0°58.9°
O5C1O1H39180.0°60.0°
O8P1O4O7122.4°119.9°
O8P1O4C4171.9°65.1°
O8P1O7H10119.7°60.0°
P1O4C4C3106.3°120.0°
O4P1O7H10119.8°180.0°
O4P1O8H13112.4°59.9°
P1O4C4H412.6°0.1°
O7P1O4C449.5°175.0°
O7P1O8H13119.7°60.0°
O4C4C3H4119.7°120.1°
O4C4C3C2178.3°176.9°
O4C4C3O360.8°63.3°
O4C4C3H359.9°57.0°
O4C4C5H559.7°57.5°
C4C3C2C154.6°57.0°
C4C3C2O3121.5°119.9°
C4C3C2H3118.4°119.9°
C4C3O3H3120.0°120.3°
C4C3C2N2176.0°176.9°
C4C3O3HO3180.0°60.5°
C4C3C2H264.0°62.9°
C3C4C5H562.0°62.4°
C1C2C3N2121.4°119.9°
C1C2C3H2118.6°119.9°
C1C2C3O3176.1°176.8°
C1C2N2H2118.8°120.1°
C1C2N2C1384.6°85.0°
C1C2N2HN21152.1°151.0°
C2C1H1O1144.1°120.0°
C1C2C3H363.8°62.9°
C2C1O1H3956.6°179.9°
C2C3O3H3119.4°120.2°
C3C2N2H2119.5°120.2°
C3C2N2C13153.7°155.3°
C3C2N2HN2130.3°31.3°
C2C3O3HO359.3°180.0°
C3C2C1H159.3°62.4°
C2C3C4H461.9°63.1°
C3C2C1O1170.9°177.6°
O3C3C2N262.4°63.3°
O3C3C2H257.6°56.9°
O3C3C4H458.9°56.8°
C2N2C13HN21123.3°124.0°
C2N2C13O216.3°100.0°
C2N2C13C14148.6°140.0°
C2N2C13H3794.6°20.0°
N2C2C1H162.7°57.5°
N2C2C3H357.7°57.0°
N2C2C1O167.2°62.5°
N2C13O2C14132.7°120.0°
N2C13O2H37109.2°120.0°
N2C13C14H37117.2°120.0°
N2C13C14C15122.2°175.0°
N2C13C14H381.8°65.0°
N2C13C14H6117.5°55.0°
N2C13O2H27180.0°60.0°
C13N2C2H234.2°35.1°
O2C13C14H37119.7°120.1°
O2C13C14C150.9°65.0°
O2C13N2HN21107.1°24.0°
O2C13C14H38121.3°55.0°
O2C13C14H6119.4°175.0°
C13C14C15H38120.4°120.0°
C13C14C15H6120.3°120.0°
C13C14C15O1141.2°65.0°
C13C14C15C1680.1°175.0°
C14C13N2HN2125.3°96.0°
C13C14H38H6118.9°120.0°
C13C14C15H7161.2°55.0°
C14C13O2H2747.3°59.9°
O10C12O11C21162.9°179.9°
O10C12O11C15113.4°0.1°
O10C12C21C31123.6°0.1°
O10C12C21H28116.4°119.9°
O10C12C21H293.7°120.1°
C12O11C15C14117.0°150.0°
O11C12C21C3170.3°180.0°
C12O11C15C16121.4°90.1°
C12O11C15H72.3°30.0°
O11C12C21H2849.7°60.0°
O11C12C21H29169.8°60.0°
C21C12O11C1583.7°180.0°
C12C21C31H28119.9°120.0°
C12C21C31H29119.9°120.0°
C12C21C31C41132.7°180.0°
C12C21H28H29120.2°120.0°
C12C21C31H30107.1°60.0°
C12C21C31H3112.5°60.0°
C14C15O11C16121.7°120.0°
C14C15O11H7119.3°120.0°
C14C15C16H7118.7°120.0°
C14C15C16C1769.5°175.0°
C15C14C13H37120.7°55.0°
C15C14H38H6119.0°120.0°
C14C15C16H850.8°55.0°
C14C15C16H9170.2°65.1°
O11C15C16H7119.8°120.0°
O11C15C16C17169.0°65.0°
O11C15C14H3879.2°175.0°
O11C15C14H6161.5°55.0°
O11C15C16H870.8°175.0°
O11C15C16H948.6°54.9°
C21C31C41H30120.2°120.0°
C21C31C41H31120.2°119.9°
C21C31C41C51165.0°180.0°
C31C21H28H29120.2°120.0°
C21C31H30H31119.3°119.9°
C21C31C41H3244.8°60.0°
C21C31C41H3374.9°60.0°
C15C16C17H8120.3°120.0°
C15C16C17H9120.3°119.9°
C15C16C17C18175.0°180.0°
C16C15C14H38159.5°55.0°
C16C15C14H640.2°65.0°
C15C16H8H9119.1°120.1°
C15C16C17H1154.8°60.0°
C15C16C17H1264.8°60.1°
C16C17C18H11120.2°120.1°
C16C17C18H12120.2°119.9°
C16C17C18C7167.8°180.0°
C17C16C15H749.2°55.0°
C17C16H8H9119.1°120.0°
C16C17H11H12119.5°120.1°
C16C17C18H1472.0°60.0°
C16C17C18H1547.5°60.0°
C31C41C51H32120.1°120.0°
C31C41C51H33120.1°120.0°
C41C31C21H2812.8°59.9°
C41C31C21H29107.3°60.0°
C41C31H30H31119.3°120.1°
C31C41H32H33119.6°120.0°
C31C41C51H34180.0°60.0°
C31C41C51H3560.0°180.0°
C31C41C51H3660.0°60.0°
C17C18C7H14120.2°120.0°
C17C18C7H15120.2°120.0°
C17C18C7C8172.2°180.0°
C18C17C16H864.7°60.0°
C18C17C16H954.7°60.1°
C18C17H11H12119.4°119.9°
C17C18H14H15119.3°120.0°
C17C18C7H1651.9°60.0°
C17C18C7H1767.6°60.0°
C18C7C8H16120.2°120.0°
C18C7C8H17120.2°120.0°
C18C7C8C9153.9°180.0°
C7C18C17H1147.6°60.0°
C7C18C17H1272.0°60.0°
C7C18H14H15119.4°120.0°
C18C7H16H17119.3°120.0°
C18C7C8H1885.9°60.0°
C18C7C8H1933.7°60.0°
C51C41C31H3074.8°60.0°
C51C41C31H3144.8°60.1°
C51C41H32H33119.6°120.0°
C41C51H34H35120.0°120.1°
C41C51H34H36120.0°120.0°
C41C51H35H36120.0°120.0°
C7C8C9H18120.2°120.0°
C7C8C9H19120.2°120.0°
C7C8C9C10176.3°180.0°
C8C7C18H1467.6°60.0°
C8C7C18H1551.9°60.0°
C8C7H16H17119.3°119.9°
C7C8H18H19119.4°120.0°
C7C8C9H2056.1°60.0°
C7C8C9H2163.4°60.0°
C8C9C10H20120.3°120.0°
C8C9C10H21120.2°120.0°
C8C9C10C11168.1°180.0°
C9C8C7H1633.7°60.0°
C9C8C7H1785.9°60.0°
C9C8H18H19119.4°120.0°
C8C9H20H21119.2°120.0°
C8C9C10H2271.7°60.0°
C8C9C10H2347.9°60.0°
C9C10C11H22120.2°120.0°
C9C10C11H23120.2°120.0°
C10C9C8H1863.5°60.0°
C10C9C8H1956.1°60.0°
C10C9H20H21119.2°120.0°
C9C10H22H23119.4°120.0°
C9C10C11H24180.0°60.0°
C9C10C11H2560.0°60.0°
C9C10C11H2660.0°180.0°
C11C10C9H2047.8°60.0°
C11C10C9H2171.7°60.0°
C11C10H22H23119.4°120.0°
C10C11H24H25120.0°120.0°
C10C11H24H26120.0°120.0°
C10C11H25H26120.0°120.0°
HN21N2C13H37142.0°144.0°
HN21N2C2H289.1°88.9°
HO6O6C6H6160.1°60.0°
HO6O6C6H6260.0°60.0°
H37C13C14H38119.0°175.0°
H37C13C14H60.3°64.9°
H37C13O2H2770.8°180.0°
H38C14C15H740.8°65.0°
H6C14C15H778.5°175.0°
H7C15C16H8169.5°65.0°
H7C15C16H971.1°175.0°
H8C16C17H11175.1°180.0°
H8C16C17H1255.5°59.9°
H9C16C17H1165.5°59.9°
H9C16C17H12174.9°180.0°
H11C17C18H14167.8°180.0°
H11C17C18H1572.7°60.0°
H12C17C18H1448.2°60.0°
H12C17C18H15167.7°180.0°
H14C18C7H16172.1°180.0°
H14C18C7H1752.6°60.0°
H15C18C7H1668.3°60.0°
H15C18C7H17172.1°180.0°
H16C7C8H18153.9°180.0°
H16C7C8H1986.5°60.0°
H17C7C8H1834.3°60.0°
H17C7C8H19153.9°180.0°
H18C8C9H20176.3°180.0°
H18C8C9H2156.8°60.0°
H19C8C9H2064.1°60.0°
H19C8C9H21176.4°180.0°
H20C9C10H22168.1°NaN°
H20C9C10H2372.4°60.0°
H21C9C10H2248.6°60.0°
H21C9C10H23168.1°180.0°
H22C10C11H2459.8°180.0°
H22C10C11H25179.8°60.0°
H22C10C11H2660.2°60.0°
H23C10C11H2459.8°60.0°
H23C10C11H2560.2°180.0°
H23C10C11H26179.8°60.0°
H24C11H25H26120.0°120.0°
H28C21C31H30133.0°180.0°
H28C21C31H31107.4°60.0°
H29C21C31H3012.9°60.0°
H29C21C31H31132.5°180.0°
H30C31C41H32165.1°180.0°
H30C31C41H3345.4°60.0°
H31C31C41H3275.4°59.9°
H31C31C41H33164.9°179.9°
H32C41C51H3459.8°60.0°
H32C41C51H35179.9°60.0°
H32C41C51H3660.2°NaN°
H33C41C51H3459.9°180.0°
H33C41C51H3560.1°60.0°
H33C41C51H36179.9°60.0°
H34C51H35H36120.0°120.0°
HO3O3C3H360.0°59.8°
H1C1C2H2178.0°177.7°
H1C1O1H3972.7°60.0°
H2C2C3H3177.7°177.2°
H2C2C1O152.2°57.7°
H3C3C4H4179.7°177.1°
H4C4C5H5179.7°177.7°
H5C5C6H61168.6°175.1°
H5C5C6H6248.5°65.0°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon