VIO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.49Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | HN2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.57Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.25Å | |
| C | OXT | sing | 1.34Å | 1.26Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| CB | CG | sing | 1.53Å | 1.53Å | |
| CB | HB1 | sing | 1.09Å | 1.11Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CG | CD | sing | 1.53Å | 1.50Å | |
| CG | HG1 | sing | 1.09Å | 1.12Å | |
| CG | HG2 | sing | 1.09Å | 1.11Å | |
| CD | NE | sing | 1.46Å | 1.50Å | |
| CD | HD1 | sing | 1.09Å | 1.12Å | |
| CD | HD2 | sing | 1.09Å | 1.11Å | |
| NE | CZ | sing | 1.37Å | 1.37Å | |
| NE | HE | sing | 0.97Å | 1.02Å | |
| CZ | CH1 | sing | 1.51Å | 1.56Å | |
| CZ | NH2 | doub | 1.29Å | 1.33Å | |
| CH1 | C1 | sing | 1.53Å | 1.51Å | |
| CH1 | HH11 | sing | 1.09Å | 1.11Å | |
| CH1 | HH12 | sing | 1.09Å | 1.12Å | |
| NH2 | HH21 | sing | 0.97Å | 1.02Å | |
| NH2 | HH22 | sing | 0.97Å | 1.02Å | |
| C1 | C2 | sing | 1.53Å | 1.32Å | |
| C1 | H11 | sing | 1.09Å | 1.11Å | |
| C1 | H12 | sing | 1.09Å | 1.11Å | |
| C2 | H21 | sing | 1.09Å | 1.11Å | |
| C2 | H22 | sing | 1.09Å | 1.12Å | |
| C2 | H23 | sing | 1.09Å | 1.12Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.6° | 106.6° |
| CA | N | HN2 | 112.1° | 106.7° |
| N | CA | C | 109.7° | 109.5° |
| N | CA | CB | 106.6° | 109.5° |
| N | CA | HA | 112.1° | 109.5° |
| H | N | HN2 | 112.2° | 106.7° |
| C | CA | CB | 111.8° | 109.4° |
| C | CA | HA | 106.9° | 109.5° |
| CA | C | O | 118.7° | 120.0° |
| CA | C | OXT | 121.2° | 120.0° |
| CB | CA | HA | 109.9° | 109.5° |
| CA | CB | CG | 117.3° | 109.4° |
| CA | CB | HB1 | 109.4° | 109.5° |
| CA | CB | HB2 | 109.4° | 109.5° |
| O | C | OXT | 120.1° | 120.0° |
| C | OXT | HXT | 121.2° | 120.0° |
| CG | CB | HB1 | 109.4° | 109.5° |
| CG | CB | HB2 | 109.4° | 109.4° |
| CB | CG | CD | 108.1° | 109.4° |
| CB | CG | HG1 | 112.7° | 109.5° |
| CB | CG | HG2 | 112.7° | 109.4° |
| HB1 | CB | HB2 | 100.8° | 109.5° |
| CD | CG | HG1 | 112.8° | 109.5° |
| CD | CG | HG2 | 112.7° | 109.5° |
| CG | CD | NE | 111.4° | 109.4° |
| CG | CD | HD1 | 111.5° | 109.5° |
| CG | CD | HD2 | 111.5° | 109.5° |
| HG1 | CG | HG2 | 97.7° | 109.5° |
| NE | CD | HD1 | 111.5° | 109.5° |
| NE | CD | HD2 | 111.5° | 109.5° |
| CD | NE | CZ | 131.6° | 120.0° |
| CD | NE | HE | 104.5° | 120.0° |
| HD1 | CD | HD2 | 98.9° | 109.5° |
| CZ | NE | HE | 104.6° | 120.0° |
| NE | CZ | CH1 | 127.7° | 120.0° |
| NE | CZ | NH2 | 114.4° | 120.0° |
| CH1 | CZ | NH2 | 117.9° | 120.0° |
| CZ | CH1 | C1 | 117.4° | 109.5° |
| CZ | CH1 | HH11 | 109.3° | 109.4° |
| CZ | CH1 | HH12 | 109.3° | 109.5° |
| CZ | NH2 | HH21 | 117.8° | 120.1° |
| CZ | NH2 | HH22 | 114.4° | 120.0° |
| C1 | CH1 | HH11 | 109.4° | 109.5° |
| C1 | CH1 | HH12 | 109.3° | 109.5° |
| CH1 | C1 | C2 | 123.9° | 109.5° |
| CH1 | C1 | H11 | 107.1° | 109.5° |
| CH1 | C1 | H12 | 107.1° | 109.4° |
| HH11 | CH1 | HH12 | 100.8° | 109.5° |
| HH21 | NH2 | HH22 | 127.8° | 120.0° |
| C2 | C1 | H11 | 107.1° | 109.5° |
| C2 | C1 | H12 | 107.1° | 109.5° |
| C1 | C2 | H21 | 124.0° | 109.5° |
| C1 | C2 | H22 | 107.1° | 109.5° |
| C1 | C2 | H23 | 107.1° | 109.4° |
| H11 | C1 | H12 | 102.7° | 109.4° |
| H21 | C2 | H22 | 107.1° | 109.5° |
| H21 | C2 | H23 | 107.0° | 109.5° |
| H22 | C2 | H23 | 102.6° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | HN2 | 125.3° | 113.8° |
| N | CA | C | CB | 118.0° | 119.9° |
| N | CA | C | HA | 121.7° | 120.1° |
| N | CA | CB | HA | 121.7° | 120.0° |
| N | CA | C | O | 179.9° | 19.9° |
| N | CA | C | OXT | 1.6° | 160.0° |
| N | CA | CB | CG | 60.8° | 65.0° |
| N | CA | CB | HB1 | 64.5° | 175.0° |
| N | CA | CB | HB2 | 174.0° | 54.9° |
| H | N | CA | C | 180.0° | 53.9° |
| H | N | CA | CB | 58.8° | 173.8° |
| H | N | CA | HA | 61.5° | 66.2° |
| HN2 | N | CA | C | 54.7° | 59.9° |
| HN2 | N | CA | CB | 66.5° | 60.0° |
| HN2 | N | CA | HA | 173.3° | 180.0° |
| C | CA | CB | HA | 118.5° | 120.0° |
| CA | C | O | OXT | 178.5° | 180.0° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| C | CA | CB | CG | 179.4° | 175.0° |
| C | CA | CB | HB1 | 55.4° | 55.0° |
| C | CA | CB | HB2 | 54.1° | 65.0° |
| CB | CA | C | O | 62.1° | 100.0° |
| CB | CA | C | OXT | 116.4° | 80.0° |
| CA | CB | CG | HB1 | 125.3° | 120.0° |
| CA | CB | CG | HB2 | 125.2° | 120.0° |
| CA | CB | HB1 | HB2 | 115.2° | 120.0° |
| CA | CB | CG | CD | 171.3° | 180.0° |
| CA | CB | CG | HG1 | 63.5° | 60.0° |
| CA | CB | CG | HG2 | 46.0° | 60.0° |
| HA | CA | C | O | 58.2° | 140.0° |
| HA | CA | C | OXT | 123.3° | 40.0° |
| HA | CA | CB | CG | 60.9° | 55.0° |
| HA | CA | CB | HB1 | 173.9° | 65.0° |
| HA | CA | CB | HB2 | 64.4° | 175.0° |
| O | C | OXT | HXT | 1.6° | 0.0° |
| CG | CB | HB1 | HB2 | 115.1° | 120.0° |
| CB | CG | CD | HG1 | 125.2° | 120.0° |
| CB | CG | CD | HG2 | 125.3° | 119.9° |
| CB | CG | HG1 | HG2 | 118.6° | 120.0° |
| CB | CG | CD | NE | 59.2° | 180.0° |
| CB | CG | CD | HD1 | 66.0° | 60.0° |
| CB | CG | CD | HD2 | 175.5° | 60.0° |
| HB1 | CB | CG | CD | 46.0° | 60.0° |
| HB1 | CB | CG | HG1 | 171.3° | 180.0° |
| HB1 | CB | CG | HG2 | 79.3° | 60.0° |
| HB2 | CB | CG | CD | 63.5° | 60.0° |
| HB2 | CB | CG | HG1 | 61.8° | 59.9° |
| HB2 | CB | CG | HG2 | 171.2° | 180.0° |
| CD | CG | HG1 | HG2 | 118.7° | 120.1° |
| CG | CD | NE | HD1 | 125.2° | 120.0° |
| CG | CD | NE | HD2 | 125.3° | 120.0° |
| CG | CD | HD1 | HD2 | 117.4° | 120.0° |
| CG | CD | NE | CZ | 172.9° | 180.0° |
| CG | CD | NE | HE | 47.6° | 0.0° |
| HG1 | CG | CD | NE | 175.6° | 60.0° |
| HG1 | CG | CD | HD1 | 59.2° | 180.0° |
| HG1 | CG | CD | HD2 | 50.3° | 59.9° |
| HG2 | CG | CD | NE | 66.1° | 60.0° |
| HG2 | CG | CD | HD1 | 168.7° | 60.0° |
| HG2 | CG | CD | HD2 | 59.2° | 180.0° |
| NE | CD | HD1 | HD2 | 117.4° | 120.0° |
| CD | NE | CZ | HE | 125.2° | 180.0° |
| CD | NE | CZ | CH1 | 0.1° | 180.0° |
| CD | NE | CZ | NH2 | 179.4° | 0.0° |
| HD1 | CD | NE | CZ | 47.7° | 60.0° |
| HD1 | CD | NE | HE | 77.6° | 120.0° |
| HD2 | CD | NE | CZ | 61.8° | 60.0° |
| HD2 | CD | NE | HE | 172.9° | 120.0° |
| NE | CZ | CH1 | NH2 | 179.3° | 179.9° |
| NE | CZ | CH1 | C1 | 39.3° | 89.9° |
| NE | CZ | CH1 | HH11 | 164.6° | 150.0° |
| NE | CZ | CH1 | HH12 | 85.9° | 30.0° |
| NE | CZ | NH2 | HH21 | 0.6° | 0.0° |
| NE | CZ | NH2 | HH22 | 180.0° | 180.0° |
| HE | NE | CZ | CH1 | 125.3° | 0.0° |
| HE | NE | CZ | NH2 | 55.4° | 180.0° |
| CZ | CH1 | C1 | HH11 | 125.3° | 120.0° |
| CZ | CH1 | C1 | HH12 | 125.2° | 120.0° |
| CZ | CH1 | HH11 | HH12 | 115.1° | 120.0° |
| CH1 | CZ | NH2 | HH21 | 180.0° | 179.9° |
| CH1 | CZ | NH2 | HH22 | 0.6° | 0.0° |
| CZ | CH1 | C1 | C2 | 124.8° | 180.0° |
| CZ | CH1 | C1 | H11 | 0.4° | 60.0° |
| CZ | CH1 | C1 | H12 | 110.0° | 60.0° |
| NH2 | CZ | CH1 | C1 | 140.0° | 90.0° |
| NH2 | CZ | CH1 | HH11 | 14.7° | 30.0° |
| NH2 | CZ | CH1 | HH12 | 94.8° | 150.0° |
| CZ | NH2 | HH21 | HH22 | 179.3° | 180.0° |
| C1 | CH1 | HH11 | HH12 | 115.1° | 120.0° |
| CH1 | C1 | C2 | H11 | 125.2° | 120.1° |
| CH1 | C1 | C2 | H12 | 125.2° | 120.0° |
| CH1 | C1 | H11 | H12 | 112.6° | 120.0° |
| CH1 | C1 | C2 | H21 | 180.0° | 60.0° |
| CH1 | C1 | C2 | H22 | 54.7° | 180.0° |
| CH1 | C1 | C2 | H23 | 54.7° | 60.0° |
| HH11 | CH1 | C1 | C2 | 109.9° | 60.0° |
| HH11 | CH1 | C1 | H11 | 124.8° | 180.0° |
| HH11 | CH1 | C1 | H12 | 15.3° | 60.0° |
| HH12 | CH1 | C1 | C2 | 0.4° | 60.0° |
| HH12 | CH1 | C1 | H11 | 125.7° | 60.0° |
| HH12 | CH1 | C1 | H12 | 124.8° | 180.0° |
| C2 | C1 | H11 | H12 | 112.6° | 120.0° |
| C1 | C2 | H21 | H22 | 125.3° | 120.0° |
| C1 | C2 | H21 | H23 | 125.3° | 120.0° |
| C1 | C2 | H22 | H23 | 112.6° | 120.0° |
| H11 | C1 | C2 | H21 | 54.8° | 180.0° |
| H11 | C1 | C2 | H22 | 179.9° | 60.0° |
| H11 | C1 | C2 | H23 | 70.5° | 60.1° |
| H12 | C1 | C2 | H21 | 54.8° | 60.0° |
| H12 | C1 | C2 | H22 | 70.5° | 60.0° |
| H12 | C1 | C2 | H23 | 180.0° | 180.0° |
| H21 | C2 | H22 | H23 | 112.5° | 120.0° |
