VIG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1' | O1' | sing | 1.34Å | 1.23Å | |
| C1' | O2' | doub | 1.21Å | 1.23Å | |
| C1' | C1 | sing | 1.51Å | 1.51Å | |
| O1' | H1' | sing | 0.97Å | 0.95Å | |
| C1 | C2 | sing | 1.53Å | 1.52Å | |
| C1 | H1C1 | sing | 1.09Å | 1.10Å | |
| C1 | H1C2 | sing | 1.09Å | 1.10Å | |
| C2 | C3 | sing | 1.53Å | 1.53Å | |
| C2 | H2C1 | sing | 1.09Å | 1.10Å | |
| C2 | H2C2 | sing | 1.09Å | 1.10Å | |
| C3 | C4 | sing | 1.53Å | 1.53Å | |
| C3 | N3 | sing | 1.47Å | 1.46Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| C4 | C5 | sing | 1.53Å | 1.52Å | |
| C4 | H4C1 | sing | 1.09Å | 1.10Å | |
| C4 | H4C2 | sing | 1.09Å | 1.10Å | |
| C5 | H5C1 | sing | 1.09Å | 1.10Å | |
| C5 | H5C2 | sing | 1.09Å | 1.10Å | |
| C5 | H5C3 | sing | 1.09Å | 1.10Å | |
| N3 | H3N1 | sing | 1.01Å | 1.03Å | |
| N3 | H3N2 | sing | 1.01Å | 1.03Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1' | C1' | O2' | 121.3° | 120.0° |
| O1' | C1' | C1 | 119.9° | 120.1° |
| C1' | O1' | H1' | 121.3° | 120.0° |
| O2' | C1' | C1 | 118.7° | 119.9° |
| C1' | C1 | C2 | 108.7° | 109.5° |
| C1' | C1 | H1C1 | 109.6° | 109.5° |
| C1' | C1 | H1C2 | 109.9° | 109.4° |
| C2 | C1 | H1C1 | 109.7° | 109.4° |
| C2 | C1 | H1C2 | 109.9° | 109.5° |
| C1 | C2 | C3 | 109.9° | 109.5° |
| C1 | C2 | H2C1 | 109.4° | 109.5° |
| C1 | C2 | H2C2 | 109.2° | 109.5° |
| H1C1 | C1 | H1C2 | 109.0° | 109.4° |
| C3 | C2 | H2C1 | 109.4° | 109.5° |
| C3 | C2 | H2C2 | 109.2° | 109.4° |
| C2 | C3 | C4 | 110.4° | 109.5° |
| C2 | C3 | N3 | 107.8° | 109.4° |
| C2 | C3 | H3 | 109.5° | 109.5° |
| H2C1 | C2 | H2C2 | 109.8° | 109.4° |
| C4 | C3 | N3 | 107.9° | 109.5° |
| C4 | C3 | H3 | 109.4° | 109.5° |
| C3 | C4 | C5 | 115.6° | 109.5° |
| C3 | C4 | H4C1 | 107.9° | 109.5° |
| C3 | C4 | H4C2 | 105.9° | 109.4° |
| N3 | C3 | H3 | 111.9° | 109.5° |
| C3 | N3 | H3N1 | 109.5° | 106.7° |
| C3 | N3 | H3N2 | 109.5° | 106.8° |
| C5 | C4 | H4C1 | 107.9° | 109.5° |
| C5 | C4 | H4C2 | 105.9° | 109.5° |
| C4 | C5 | H5C1 | 109.5° | 109.5° |
| C4 | C5 | H5C2 | 109.5° | 109.5° |
| C4 | C5 | H5C3 | 109.4° | 109.4° |
| H4C1 | C4 | H4C2 | 113.8° | 109.5° |
| H5C1 | C5 | H5C2 | 109.4° | 109.5° |
| H5C1 | C5 | H5C3 | 109.5° | 109.5° |
| H5C2 | C5 | H5C3 | 109.5° | 109.5° |
| H3N1 | N3 | H3N2 | 109.5° | 106.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1' | C1' | O2' | C1 | 179.5° | 179.9° |
| O1' | C1' | C1 | C2 | 99.6° | 179.9° |
| O1' | C1' | C1 | H1C1 | 20.3° | 60.0° |
| O1' | C1' | C1 | H1C2 | 140.0° | 59.9° |
| O2' | C1' | O1' | H1' | 180.0° | 0.1° |
| O2' | C1' | C1 | C2 | 79.8° | 0.0° |
| O2' | C1' | C1 | H1C1 | 160.3° | 119.9° |
| O2' | C1' | C1 | H1C2 | 40.5° | 120.1° |
| C1 | C1' | O1' | H1' | 0.6° | 180.0° |
| C1' | C1 | C2 | H1C1 | 119.9° | 120.0° |
| C1' | C1 | C2 | H1C2 | 120.3° | 120.1° |
| C1' | C1 | H1C1 | H1C2 | 120.3° | 119.9° |
| C1' | C1 | C2 | C3 | 149.4° | 180.0° |
| C1' | C1 | C2 | H2C1 | 90.5° | 60.0° |
| C1' | C1 | C2 | H2C2 | 29.6° | 60.0° |
| C2 | C1 | H1C1 | H1C2 | 120.4° | 120.0° |
| C1 | C2 | C3 | H2C1 | 120.1° | 120.0° |
| C1 | C2 | C3 | H2C2 | 119.8° | 120.1° |
| C1 | C2 | H2C1 | H2C2 | 119.8° | 120.0° |
| C1 | C2 | C3 | C4 | 88.1° | 180.0° |
| C1 | C2 | C3 | N3 | 154.3° | 60.0° |
| C1 | C2 | C3 | H3 | 32.4° | 60.0° |
| H1C1 | C1 | C2 | C3 | 29.6° | 60.0° |
| H1C1 | C1 | C2 | H2C1 | 149.6° | 179.9° |
| H1C1 | C1 | C2 | H2C2 | 90.2° | 60.0° |
| H1C2 | C1 | C2 | C3 | 90.2° | 59.9° |
| H1C2 | C1 | C2 | H2C1 | 29.8° | 60.1° |
| H1C2 | C1 | C2 | H2C2 | 150.0° | 180.0° |
| C3 | C2 | H2C1 | H2C2 | 119.8° | 119.9° |
| C2 | C3 | C4 | N3 | 117.6° | 120.0° |
| C2 | C3 | C4 | H3 | 120.5° | 120.0° |
| C2 | C3 | N3 | H3 | 120.4° | 120.0° |
| C2 | C3 | C4 | C5 | 153.0° | 180.0° |
| C2 | C3 | C4 | H4C1 | 86.1° | 60.0° |
| C2 | C3 | C4 | H4C2 | 36.1° | 60.0° |
| C2 | C3 | N3 | H3N1 | 29.1° | 60.1° |
| C2 | C3 | N3 | H3N2 | 149.1° | 53.8° |
| H2C1 | C2 | C3 | C4 | 32.0° | 60.0° |
| H2C1 | C2 | C3 | N3 | 85.7° | 60.1° |
| H2C1 | C2 | C3 | H3 | 152.4° | 179.9° |
| H2C2 | C2 | C3 | C4 | 152.1° | 60.0° |
| H2C2 | C2 | C3 | N3 | 34.5° | 180.0° |
| H2C2 | C2 | C3 | H3 | 87.4° | 60.0° |
| C4 | C3 | N3 | H3 | 120.4° | 120.0° |
| C3 | C4 | C5 | H4C1 | 120.9° | 120.0° |
| C3 | C4 | C5 | H4C2 | 116.9° | 120.0° |
| C3 | C4 | H4C1 | H4C2 | 117.2° | 120.0° |
| C3 | C4 | C5 | H5C1 | 79.5° | 180.0° |
| C3 | C4 | C5 | H5C2 | 40.5° | 59.9° |
| C3 | C4 | C5 | H5C3 | 160.4° | 60.0° |
| C4 | C3 | N3 | H3N1 | 148.3° | 60.0° |
| C4 | C3 | N3 | H3N2 | 91.7° | 173.8° |
| N3 | C3 | C4 | C5 | 35.4° | 60.0° |
| N3 | C3 | C4 | H4C1 | 156.3° | 60.0° |
| N3 | C3 | C4 | H4C2 | 81.5° | 180.0° |
| C3 | N3 | H3N1 | H3N2 | 120.0° | 113.8° |
| H3 | C3 | C4 | C5 | 86.5° | 60.0° |
| H3 | C3 | C4 | H4C1 | 34.4° | 180.0° |
| H3 | C3 | C4 | H4C2 | 156.6° | 60.0° |
| H3 | C3 | N3 | H3N1 | 91.3° | 180.0° |
| H3 | C3 | N3 | H3N2 | 28.7° | 66.2° |
| C5 | C4 | H4C1 | H4C2 | 117.2° | 120.1° |
| C4 | C5 | H5C1 | H5C2 | 120.0° | 120.0° |
| C4 | C5 | H5C1 | H5C3 | 120.0° | 120.0° |
| C4 | C5 | H5C2 | H5C3 | 120.0° | 119.9° |
| H4C1 | C4 | C5 | H5C1 | 159.6° | 60.0° |
| H4C1 | C4 | C5 | H5C2 | 80.4° | 60.0° |
| H4C1 | C4 | C5 | H5C3 | 39.5° | 180.0° |
| H4C2 | C4 | C5 | H5C1 | 37.3° | 60.0° |
| H4C2 | C4 | C5 | H5C2 | 157.3° | 179.9° |
| H4C2 | C4 | C5 | H5C3 | 82.7° | 60.0° |
| H5C1 | C5 | H5C2 | H5C3 | 120.0° | 120.0° |
