VIB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CM2 | C2A | sing | 1.51Å | 1.50Å | |
CM2 | HM21 | sing | 1.09Å | 1.11Å | |
CM2 | HM22 | sing | 1.09Å | 1.11Å | |
CM2 | HM23 | sing | 1.09Å | 1.12Å | |
N4A | C4A | sing | 1.39Å | 1.41Å | |
N4A | H4A1 | sing | 0.97Å | 1.02Å | |
N4A | H4A2 | sing | 0.97Å | 1.02Å | |
CM4 | C4 | sing | 1.51Å | 1.52Å | |
CM4 | HM41 | sing | 1.09Å | 1.11Å | |
CM4 | HM42 | sing | 1.09Å | 1.12Å | |
CM4 | HM43 | sing | 1.09Å | 1.12Å | |
O1 | C7 | sing | 1.43Å | 1.42Å | |
O1 | HO1 | sing | 0.97Å | 0.95Å | |
C7 | C6 | sing | 1.53Å | 1.53Å | |
C7 | HC71 | sing | 1.09Å | 1.12Å | |
C7 | HC72 | sing | 1.09Å | 1.11Å | |
C6 | C5 | sing | 1.51Å | 1.51Å | |
C6 | HC61 | sing | 1.09Å | 1.11Å | |
C6 | HC62 | sing | 1.09Å | 1.12Å | |
C2 | S1 | sing | 1.74Å | 1.78Å | Aromatic |
C2 | N3 | doub | 1.31Å | 1.26Å | Aromatic |
C2 | HC2 | sing | 1.08Å | 1.10Å | |
S1 | C5 | sing | 1.79Å | 1.80Å | Aromatic |
C5 | C4 | doub | 1.36Å | 1.36Å | Aromatic |
C4 | N3 | sing | 1.32Å | 1.29Å | Aromatic |
N3 | C7A | sing | 1.46Å | 1.48Å | |
C7A | C5A | sing | 1.51Å | 1.52Å | |
C7A | H7A1 | sing | 1.09Å | 1.11Å | |
C7A | H7A2 | sing | 1.09Å | 1.11Å | |
C4A | N3A | sing | 1.33Å | 1.40Å | Aromatic |
C4A | C5A | doub | 1.40Å | 1.42Å | Aromatic |
N3A | C2A | doub | 1.32Å | 1.40Å | Aromatic |
C2A | N1A | sing | 1.32Å | 1.40Å | Aromatic |
N1A | C6A | doub | 1.33Å | 1.41Å | Aromatic |
C6A | C5A | sing | 1.38Å | 1.40Å | Aromatic |
C6A | H6AC | sing | 1.08Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2A | CM2 | HM21 | 120.3° | 109.5° |
C2A | CM2 | HM22 | 108.3° | 109.5° |
C2A | CM2 | HM23 | 108.3° | 109.5° |
CM2 | C2A | N3A | 120.3° | 119.1° |
CM2 | C2A | N1A | 120.2° | 119.1° |
HM21 | CM2 | HM22 | 108.4° | 109.5° |
HM21 | CM2 | HM23 | 108.3° | 109.5° |
HM22 | CM2 | HM23 | 101.6° | 109.4° |
C4A | N4A | H4A1 | 119.0° | 120.0° |
C4A | N4A | H4A2 | 108.8° | 120.0° |
N4A | C4A | N3A | 119.0° | 120.5° |
N4A | C4A | C5A | 121.0° | 120.5° |
H4A1 | N4A | H4A2 | 108.8° | 120.1° |
C4 | CM4 | HM41 | 123.0° | 109.5° |
C4 | CM4 | HM42 | 107.4° | 109.5° |
C4 | CM4 | HM43 | 107.3° | 109.5° |
CM4 | C4 | C5 | 123.0° | 120.8° |
CM4 | C4 | N3 | 123.9° | 120.7° |
HM41 | CM4 | HM42 | 107.5° | 109.5° |
HM41 | CM4 | HM43 | 107.4° | 109.5° |
HM42 | CM4 | HM43 | 102.3° | 109.4° |
C7 | O1 | HO1 | 107.9° | 106.8° |
O1 | C7 | C6 | 107.9° | 109.5° |
O1 | C7 | HC71 | 112.8° | 109.5° |
O1 | C7 | HC72 | 112.8° | 109.5° |
C6 | C7 | HC71 | 112.8° | 109.5° |
C6 | C7 | HC72 | 112.8° | 109.5° |
C7 | C6 | C5 | 109.5° | 109.5° |
C7 | C6 | HC61 | 112.2° | 109.5° |
C7 | C6 | HC62 | 112.1° | 109.5° |
HC71 | C7 | HC72 | 97.7° | 109.5° |
C5 | C6 | HC61 | 112.2° | 109.5° |
C5 | C6 | HC62 | 112.2° | 109.5° |
C6 | C5 | S1 | 122.9° | 129.7° |
C6 | C5 | C4 | 125.1° | 129.7° |
HC61 | C6 | HC62 | 98.2° | 109.5° |
S1 | C2 | N3 | 115.1° | 102.2° |
S1 | C2 | HC2 | 137.4° | 128.9° |
C2 | S1 | C5 | 83.5° | 97.4° |
N3 | C2 | HC2 | 107.4° | 128.9° |
C2 | N3 | C4 | 116.4° | 121.4° |
C2 | N3 | C7A | 120.1° | 119.3° |
S1 | C5 | C4 | 111.9° | 100.6° |
C5 | C4 | N3 | 113.1° | 118.4° |
C4 | N3 | C7A | 123.5° | 119.3° |
N3 | C7A | C5A | 123.1° | 109.5° |
N3 | C7A | H7A1 | 107.4° | 109.4° |
N3 | C7A | H7A2 | 107.4° | 109.5° |
C5A | C7A | H7A1 | 107.4° | 109.5° |
C5A | C7A | H7A2 | 107.4° | 109.5° |
C7A | C5A | C4A | 121.5° | 120.8° |
C7A | C5A | C6A | 119.4° | 120.8° |
H7A1 | C7A | H7A2 | 102.4° | 109.5° |
N3A | C4A | C5A | 120.0° | 118.9° |
C4A | N3A | C2A | 120.7° | 120.7° |
C4A | C5A | C6A | 119.0° | 118.3° |
N3A | C2A | N1A | 119.4° | 121.8° |
C2A | N1A | C6A | 120.5° | 121.0° |
N1A | C6A | C5A | 120.4° | 119.2° |
N1A | C6A | H6AC | 120.1° | 120.4° |
C5A | C6A | H6AC | 119.6° | 120.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2A | CM2 | HM21 | HM22 | 125.3° | 120.0° |
C2A | CM2 | HM21 | HM23 | 125.2° | 120.0° |
C2A | CM2 | HM22 | HM23 | 113.9° | 120.0° |
CM2 | C2A | N3A | C4A | 179.8° | 179.7° |
CM2 | C2A | N3A | N1A | 179.9° | 179.7° |
CM2 | C2A | N1A | C6A | 179.8° | 180.0° |
HM21 | CM2 | HM22 | HM23 | 114.0° | 120.0° |
HM21 | CM2 | C2A | N3A | 180.0° | 90.3° |
HM21 | CM2 | C2A | N1A | 0.1° | 90.0° |
HM22 | CM2 | C2A | N3A | 54.7° | 29.7° |
HM22 | CM2 | C2A | N1A | 125.3° | 150.0° |
HM23 | CM2 | C2A | N3A | 54.7° | 149.7° |
HM23 | CM2 | C2A | N1A | 125.3° | 30.0° |
C4A | N4A | H4A1 | H4A2 | 125.3° | 179.8° |
N4A | C4A | C5A | C7A | 0.2° | 0.0° |
N4A | C4A | N3A | C5A | 179.8° | 179.7° |
N4A | C4A | N3A | C2A | 179.9° | 179.8° |
N4A | C4A | C5A | C6A | 179.9° | 179.9° |
H4A1 | N4A | C4A | N3A | 180.0° | 179.8° |
H4A1 | N4A | C4A | C5A | 0.3° | 0.1° |
H4A2 | N4A | C4A | N3A | 54.7° | 0.4° |
H4A2 | N4A | C4A | C5A | 125.0° | 179.9° |
C4 | CM4 | HM41 | HM42 | 125.3° | 120.0° |
C4 | CM4 | HM41 | HM43 | 125.2° | 120.0° |
C4 | CM4 | HM42 | HM43 | 112.9° | 119.9° |
CM4 | C4 | C5 | C6 | 0.3° | 0.3° |
CM4 | C4 | N3 | C2 | 179.9° | 179.9° |
CM4 | C4 | C5 | S1 | 180.0° | 180.0° |
CM4 | C4 | C5 | N3 | 179.8° | 179.5° |
CM4 | C4 | N3 | C7A | 0.2° | 0.2° |
HM41 | CM4 | HM42 | HM43 | 113.0° | 120.0° |
HM41 | CM4 | C4 | C5 | 180.0° | 95.5° |
HM41 | CM4 | C4 | N3 | 0.1° | 84.9° |
HM42 | CM4 | C4 | C5 | 54.7° | 144.4° |
HM42 | CM4 | C4 | N3 | 125.5° | 35.1° |
HM43 | CM4 | C4 | C5 | 54.7° | 24.5° |
HM43 | CM4 | C4 | N3 | 125.1° | 155.1° |
O1 | C7 | C6 | HC71 | 125.2° | 120.0° |
O1 | C7 | C6 | HC72 | 125.3° | 120.0° |
O1 | C7 | HC71 | HC72 | 118.7° | 120.0° |
O1 | C7 | C6 | C5 | 171.9° | 180.0° |
O1 | C7 | C6 | HC61 | 46.5° | 60.0° |
O1 | C7 | C6 | HC62 | 62.9° | 60.0° |
HO1 | O1 | C7 | C6 | 179.9° | 180.0° |
HO1 | O1 | C7 | HC71 | 54.7° | 60.0° |
HO1 | O1 | C7 | HC72 | 54.8° | 60.0° |
C6 | C7 | HC71 | HC72 | 118.7° | 120.0° |
C7 | C6 | C5 | HC61 | 125.3° | 120.0° |
C7 | C6 | C5 | HC62 | 125.2° | 120.0° |
C7 | C6 | HC61 | HC62 | 118.0° | 120.0° |
C7 | C6 | C5 | S1 | 71.6° | 90.0° |
C7 | C6 | C5 | C4 | 108.6° | 90.3° |
HC71 | C7 | C6 | C5 | 62.9° | 60.0° |
HC71 | C7 | C6 | HC61 | 171.7° | 180.0° |
HC71 | C7 | C6 | HC62 | 62.3° | 60.0° |
HC72 | C7 | C6 | C5 | 46.6° | 60.0° |
HC72 | C7 | C6 | HC61 | 78.7° | 60.0° |
HC72 | C7 | C6 | HC62 | 171.9° | 180.0° |
C5 | C6 | HC61 | HC62 | 118.2° | 120.0° |
C6 | C5 | S1 | C2 | 179.7° | 180.0° |
C6 | C5 | S1 | C4 | 179.8° | 179.7° |
C6 | C5 | C4 | N3 | 179.6° | 179.8° |
HC61 | C6 | C5 | S1 | 163.1° | 29.9° |
HC61 | C6 | C5 | C4 | 16.6° | 149.7° |
HC62 | C6 | C5 | S1 | 53.6° | 150.0° |
HC62 | C6 | C5 | C4 | 126.1° | 29.7° |
S1 | C2 | N3 | HC2 | 180.0° | 179.9° |
C2 | S1 | C5 | C4 | 0.1° | 0.2° |
S1 | C2 | N3 | C4 | 0.2° | 0.3° |
S1 | C2 | N3 | C7A | 179.6° | 180.0° |
N3 | C2 | S1 | C5 | 0.1° | 0.0° |
C2 | N3 | C4 | C5 | 0.3° | 0.6° |
C2 | N3 | C4 | C7A | 179.9° | 179.7° |
C2 | N3 | C7A | C5A | 9.4° | 94.0° |
C2 | N3 | C7A | H7A1 | 115.9° | 146.0° |
C2 | N3 | C7A | H7A2 | 134.6° | 26.0° |
HC2 | C2 | S1 | C5 | 179.9° | 179.9° |
HC2 | C2 | N3 | C4 | 179.8° | 179.8° |
HC2 | C2 | N3 | C7A | 0.3° | 0.1° |
S1 | C5 | C4 | N3 | 0.2° | 0.5° |
C5 | C4 | N3 | C7A | 179.6° | 179.7° |
C4 | N3 | C7A | C5A | 170.5° | 85.7° |
C4 | N3 | C7A | H7A1 | 64.3° | 34.3° |
C4 | N3 | C7A | H7A2 | 45.2° | 154.3° |
N3 | C7A | C5A | H7A1 | 125.2° | 120.0° |
N3 | C7A | C5A | H7A2 | 125.2° | 120.0° |
N3 | C7A | H7A1 | H7A2 | 112.9° | 120.0° |
N3 | C7A | C5A | C4A | 76.1° | 85.0° |
N3 | C7A | C5A | C6A | 103.6° | 95.0° |
C5A | C7A | H7A1 | H7A2 | 112.9° | 120.0° |
C7A | C5A | C4A | N3A | 180.0° | 179.7° |
C7A | C5A | C4A | C6A | 179.7° | 179.9° |
C7A | C5A | C6A | N1A | 180.0° | 180.0° |
C7A | C5A | C6A | H6AC | 0.0° | 0.1° |
H7A1 | C7A | C5A | C4A | 158.7° | 155.0° |
H7A1 | C7A | C5A | C6A | 21.6° | 25.0° |
H7A2 | C7A | C5A | C4A | 49.1° | 34.9° |
H7A2 | C7A | C5A | C6A | 131.1° | 145.0° |
C4A | N3A | C2A | N1A | 0.3° | 0.6° |
N3A | C4A | C5A | C6A | 0.3° | 0.3° |
C5A | C4A | N3A | C2A | 0.3° | 0.6° |
C4A | C5A | C6A | N1A | 0.3° | 0.0° |
C4A | C5A | C6A | H6AC | 179.7° | 180.0° |
N3A | C2A | N1A | C6A | 0.2° | 0.3° |
C2A | N1A | C6A | C5A | 0.2° | 0.0° |
C2A | N1A | C6A | H6AC | 179.7° | 180.0° |
N1A | C6A | C5A | H6AC | 180.0° | 179.9° |