Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VIB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CM2C2Asing1.51Å1.50Å
CM2HM21sing1.09Å1.11Å
CM2HM22sing1.09Å1.11Å
CM2HM23sing1.09Å1.12Å
N4AC4Asing1.39Å1.41Å
N4AH4A1sing0.97Å1.02Å
N4AH4A2sing0.97Å1.02Å
CM4C4sing1.51Å1.52Å
CM4HM41sing1.09Å1.11Å
CM4HM42sing1.09Å1.12Å
CM4HM43sing1.09Å1.12Å
O1C7sing1.43Å1.42Å
O1HO1sing0.97Å0.95Å
C7C6sing1.53Å1.53Å
C7HC71sing1.09Å1.12Å
C7HC72sing1.09Å1.11Å
C6C5sing1.51Å1.51Å
C6HC61sing1.09Å1.11Å
C6HC62sing1.09Å1.12Å
C2S1sing1.74Å1.78ÅAromatic
C2N3doub1.31Å1.26ÅAromatic
C2HC2sing1.08Å1.10Å
S1C5sing1.79Å1.80ÅAromatic
C5C4doub1.36Å1.36ÅAromatic
C4N3sing1.32Å1.29ÅAromatic
N3C7Asing1.46Å1.48Å
C7AC5Asing1.51Å1.52Å
C7AH7A1sing1.09Å1.11Å
C7AH7A2sing1.09Å1.11Å
C4AN3Asing1.33Å1.40ÅAromatic
C4AC5Adoub1.40Å1.42ÅAromatic
N3AC2Adoub1.32Å1.40ÅAromatic
C2AN1Asing1.32Å1.40ÅAromatic
N1AC6Adoub1.33Å1.41ÅAromatic
C6AC5Asing1.38Å1.40ÅAromatic
C6AH6ACsing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2ACM2HM21120.3°109.5°
C2ACM2HM22108.3°109.5°
C2ACM2HM23108.3°109.5°
CM2C2AN3A120.3°119.1°
CM2C2AN1A120.2°119.1°
HM21CM2HM22108.4°109.5°
HM21CM2HM23108.3°109.5°
HM22CM2HM23101.6°109.4°
C4AN4AH4A1119.0°120.0°
C4AN4AH4A2108.8°120.0°
N4AC4AN3A119.0°120.5°
N4AC4AC5A121.0°120.5°
H4A1N4AH4A2108.8°120.1°
C4CM4HM41123.0°109.5°
C4CM4HM42107.4°109.5°
C4CM4HM43107.3°109.5°
CM4C4C5123.0°120.8°
CM4C4N3123.9°120.7°
HM41CM4HM42107.5°109.5°
HM41CM4HM43107.4°109.5°
HM42CM4HM43102.3°109.4°
C7O1HO1107.9°106.8°
O1C7C6107.9°109.5°
O1C7HC71112.8°109.5°
O1C7HC72112.8°109.5°
C6C7HC71112.8°109.5°
C6C7HC72112.8°109.5°
C7C6C5109.5°109.5°
C7C6HC61112.2°109.5°
C7C6HC62112.1°109.5°
HC71C7HC7297.7°109.5°
C5C6HC61112.2°109.5°
C5C6HC62112.2°109.5°
C6C5S1122.9°129.7°
C6C5C4125.1°129.7°
HC61C6HC6298.2°109.5°
S1C2N3115.1°102.2°
S1C2HC2137.4°128.9°
C2S1C583.5°97.4°
N3C2HC2107.4°128.9°
C2N3C4116.4°121.4°
C2N3C7A120.1°119.3°
S1C5C4111.9°100.6°
C5C4N3113.1°118.4°
C4N3C7A123.5°119.3°
N3C7AC5A123.1°109.5°
N3C7AH7A1107.4°109.4°
N3C7AH7A2107.4°109.5°
C5AC7AH7A1107.4°109.5°
C5AC7AH7A2107.4°109.5°
C7AC5AC4A121.5°120.8°
C7AC5AC6A119.4°120.8°
H7A1C7AH7A2102.4°109.5°
N3AC4AC5A120.0°118.9°
C4AN3AC2A120.7°120.7°
C4AC5AC6A119.0°118.3°
N3AC2AN1A119.4°121.8°
C2AN1AC6A120.5°121.0°
N1AC6AC5A120.4°119.2°
N1AC6AH6AC120.1°120.4°
C5AC6AH6AC119.6°120.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2ACM2HM21HM22125.3°120.0°
C2ACM2HM21HM23125.2°120.0°
C2ACM2HM22HM23113.9°120.0°
CM2C2AN3AC4A179.8°179.7°
CM2C2AN3AN1A179.9°179.7°
CM2C2AN1AC6A179.8°180.0°
HM21CM2HM22HM23114.0°120.0°
HM21CM2C2AN3A180.0°90.3°
HM21CM2C2AN1A0.1°90.0°
HM22CM2C2AN3A54.7°29.7°
HM22CM2C2AN1A125.3°150.0°
HM23CM2C2AN3A54.7°149.7°
HM23CM2C2AN1A125.3°30.0°
C4AN4AH4A1H4A2125.3°179.8°
N4AC4AC5AC7A0.2°0.0°
N4AC4AN3AC5A179.8°179.7°
N4AC4AN3AC2A179.9°179.8°
N4AC4AC5AC6A179.9°179.9°
H4A1N4AC4AN3A180.0°179.8°
H4A1N4AC4AC5A0.3°0.1°
H4A2N4AC4AN3A54.7°0.4°
H4A2N4AC4AC5A125.0°179.9°
C4CM4HM41HM42125.3°120.0°
C4CM4HM41HM43125.2°120.0°
C4CM4HM42HM43112.9°119.9°
CM4C4C5C60.3°0.3°
CM4C4N3C2179.9°179.9°
CM4C4C5S1180.0°180.0°
CM4C4C5N3179.8°179.5°
CM4C4N3C7A0.2°0.2°
HM41CM4HM42HM43113.0°120.0°
HM41CM4C4C5180.0°95.5°
HM41CM4C4N30.1°84.9°
HM42CM4C4C554.7°144.4°
HM42CM4C4N3125.5°35.1°
HM43CM4C4C554.7°24.5°
HM43CM4C4N3125.1°155.1°
O1C7C6HC71125.2°120.0°
O1C7C6HC72125.3°120.0°
O1C7HC71HC72118.7°120.0°
O1C7C6C5171.9°180.0°
O1C7C6HC6146.5°60.0°
O1C7C6HC6262.9°60.0°
HO1O1C7C6179.9°180.0°
HO1O1C7HC7154.7°60.0°
HO1O1C7HC7254.8°60.0°
C6C7HC71HC72118.7°120.0°
C7C6C5HC61125.3°120.0°
C7C6C5HC62125.2°120.0°
C7C6HC61HC62118.0°120.0°
C7C6C5S171.6°90.0°
C7C6C5C4108.6°90.3°
HC71C7C6C562.9°60.0°
HC71C7C6HC61171.7°180.0°
HC71C7C6HC6262.3°60.0°
HC72C7C6C546.6°60.0°
HC72C7C6HC6178.7°60.0°
HC72C7C6HC62171.9°180.0°
C5C6HC61HC62118.2°120.0°
C6C5S1C2179.7°180.0°
C6C5S1C4179.8°179.7°
C6C5C4N3179.6°179.8°
HC61C6C5S1163.1°29.9°
HC61C6C5C416.6°149.7°
HC62C6C5S153.6°150.0°
HC62C6C5C4126.1°29.7°
S1C2N3HC2180.0°179.9°
C2S1C5C40.1°0.2°
S1C2N3C40.2°0.3°
S1C2N3C7A179.6°180.0°
N3C2S1C50.1°0.0°
C2N3C4C50.3°0.6°
C2N3C4C7A179.9°179.7°
C2N3C7AC5A9.4°94.0°
C2N3C7AH7A1115.9°146.0°
C2N3C7AH7A2134.6°26.0°
HC2C2S1C5179.9°179.9°
HC2C2N3C4179.8°179.8°
HC2C2N3C7A0.3°0.1°
S1C5C4N30.2°0.5°
C5C4N3C7A179.6°179.7°
C4N3C7AC5A170.5°85.7°
C4N3C7AH7A164.3°34.3°
C4N3C7AH7A245.2°154.3°
N3C7AC5AH7A1125.2°120.0°
N3C7AC5AH7A2125.2°120.0°
N3C7AH7A1H7A2112.9°120.0°
N3C7AC5AC4A76.1°85.0°
N3C7AC5AC6A103.6°95.0°
C5AC7AH7A1H7A2112.9°120.0°
C7AC5AC4AN3A180.0°179.7°
C7AC5AC4AC6A179.7°179.9°
C7AC5AC6AN1A180.0°180.0°
C7AC5AC6AH6AC0.0°0.1°
H7A1C7AC5AC4A158.7°155.0°
H7A1C7AC5AC6A21.6°25.0°
H7A2C7AC5AC4A49.1°34.9°
H7A2C7AC5AC6A131.1°145.0°
C4AN3AC2AN1A0.3°0.6°
N3AC4AC5AC6A0.3°0.3°
C5AC4AN3AC2A0.3°0.6°
C4AC5AC6AN1A0.3°0.0°
C4AC5AC6AH6AC179.7°180.0°
N3AC2AN1AC6A0.2°0.3°
C2AN1AC6AC5A0.2°0.0°
C2AN1AC6AH6AC179.7°180.0°
N1AC6AC5AH6AC180.0°179.9°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon