English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

VI5

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
F	C7	sing	1.35Å	1.31Å
C6	C7	doub	1.38Å	1.38Å	Aromatic
C6	C5	sing	1.38Å	1.37Å	Aromatic
C7	C8	sing	1.38Å	1.40Å	Aromatic
C5	C4	doub	1.38Å	1.38Å	Aromatic
C8	C3	doub	1.39Å	1.39Å	Aromatic
C4	C3	sing	1.39Å	1.38Å	Aromatic
C3	N1	sing	1.40Å	1.42Å
O	C2	doub	1.21Å	1.22Å
C2	N1	sing	1.35Å	1.35Å
C2	C1	sing	1.51Å	1.55Å
C	N	sing	1.47Å	1.51Å
N	C1	sing	1.47Å	1.53Å
N1	H1	sing	0.97Å	1.00Å
C8	H2	sing	1.08Å	1.08Å
C1	H3	sing	1.09Å	1.10Å
C1	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C4	H7	sing	1.08Å	1.08Å
N	H8	sing	1.01Å	1.00Å
C	H10	sing	1.09Å	1.10Å
C	H11	sing	1.09Å	1.10Å
C	H12	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
F	C7	C6	118.1°	120.0°
F	C7	C8	119.5°	120.0°
C7	C6	C5	118.8°	120.2°
C6	C7	C8	122.4°	120.0°
C7	C6	H6	120.6°	119.9°
C6	C5	C4	120.9°	120.1°
C6	C5	H5	119.5°	120.0°
C5	C6	H6	120.6°	119.9°
C7	C8	C3	116.7°	119.9°
C7	C8	H2	121.6°	120.0°
C5	C4	C3	119.3°	120.0°
C4	C5	H5	119.6°	120.0°
C5	C4	H7	120.4°	120.0°
C8	C3	C4	122.0°	119.9°
C8	C3	N1	121.3°	120.0°
C3	C8	H2	121.7°	120.1°
C4	C3	N1	116.7°	120.1°
C3	C4	H7	120.3°	120.0°
C3	N1	C2	123.7°	120.0°
C3	N1	H1	118.2°	120.0°
O	C2	N1	126.2°	120.0°
O	C2	C1	119.6°	120.1°
N1	C2	C1	114.2°	120.0°
C2	N1	H1	118.1°	120.0°
C2	C1	N	110.0°	109.4°
C2	C1	H3	109.3°	109.5°
C2	C1	H4	109.3°	109.5°
C	N	C1	111.1°	111.0°
C	N	H8	109.1°	111.0°
N	C	H10	109.5°	109.5°
N	C	H11	109.5°	109.4°
N	C	H12	109.5°	109.5°
N	C1	H3	109.4°	109.5°
N	C1	H4	109.3°	109.5°
C1	N	H8	109.1°	111.0°
H3	C1	H4	109.5°	109.5°
H10	C	H11	109.5°	109.5°
H10	C	H12	109.5°	109.5°
H11	C	H12	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
F	C7	C6	C8	179.7°	179.7°
F	C7	C6	C5	179.6°	179.8°
F	C7	C8	C3	179.8°	179.7°
F	C7	C8	H2	0.2°	0.3°
F	C7	C6	H6	0.4°	0.3°
C7	C6	C5	H6	180.0°	180.0°
C7	C6	C5	C4	0.0°	0.0°
C6	C7	C8	C3	0.1°	0.0°
C6	C7	C8	H2	179.9°	180.0°
C7	C6	C5	H5	180.0°	180.0°
C5	C6	C7	C8	0.1°	0.0°
C6	C5	C4	H5	180.0°	180.0°
C6	C5	C4	C3	0.2°	0.0°
C6	C5	C4	H7	179.8°	179.9°
C7	C8	C3	H2	180.0°	180.0°
C7	C8	C3	C4	0.4°	0.1°
C7	C8	C3	N1	177.5°	180.0°
C8	C7	C6	H6	179.9°	180.0°
C5	C4	C3	C8	0.5°	0.1°
C5	C4	C3	H7	180.0°	179.9°
C5	C4	C3	N1	177.5°	180.0°
C4	C5	C6	H6	180.0°	180.0°
C8	C3	C4	N1	177.9°	179.9°
C8	C3	N1	C2	18.2°	33.4°
C8	C3	N1	H1	161.8°	146.8°
C8	C3	C4	H7	179.5°	179.9°
C4	C3	N1	C2	163.9°	146.7°
C4	C3	N1	H1	16.2°	33.1°
C4	C3	C8	H2	179.6°	179.9°
C3	C4	C5	H5	179.8°	179.9°
C3	N1	C2	O	0.9°	5.1°
C3	N1	C2	H1	180.0°	179.7°
C3	N1	C2	C1	179.3°	174.9°
N1	C3	C8	H2	2.5°	0.0°
N1	C3	C4	H7	2.5°	0.1°
O	C2	N1	C1	179.8°	180.0°
O	C2	C1	N	39.0°	0.0°
O	C2	N1	H1	179.1°	174.6°
O	C2	C1	H3	159.1°	120.0°
O	C2	C1	H4	81.1°	120.0°
N1	C2	C1	N	140.8°	180.0°
N1	C2	C1	H3	20.8°	60.0°
N1	C2	C1	H4	99.1°	60.0°
C2	C1	N	C	69.5°	180.0°
C2	C1	N	H3	120.1°	120.0°
C2	C1	N	H4	120.1°	120.0°
C1	C2	N1	H1	0.7°	5.3°
C2	C1	H3	H4	119.7°	120.0°
C2	C1	N	H8	170.2°	56.1°
C	N	C1	H8	120.2°	123.9°
C	N	C1	H3	170.4°	60.0°
C	N	C1	H4	50.5°	60.1°
N	C	H10	H11	120.0°	120.0°
N	C	H10	H12	120.0°	120.0°
N	C	H11	H12	120.0°	120.0°
N	C1	H3	H4	119.8°	120.0°
C1	N	C	H10	180.0°	59.9°
C1	N	C	H11	60.0°	60.1°
C1	N	C	H12	60.0°	180.0°
H3	C1	N	H8	50.1°	63.9°
H4	C1	N	H8	69.7°	176.1°
H5	C5	C6	H6	0.0°	0.1°
H5	C5	C4	H7	0.2°	0.1°
H8	N	C	H10	59.7°	64.0°
H8	N	C	H11	60.3°	176.1°
H8	N	C	H12	179.8°	56.1°
H10	C	H11	H12	120.0°	120.0°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon