VHL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
RE	N1	sing	0.00Å	2.18Å
RE	N3	sing	0.00Å	2.16Å
C1	O1	trip	0.00Å	1.17Å
C2	O2	trip	0.00Å	1.14Å
C3	O3	trip	0.00Å	1.13Å
N1	C4	sing	0.00Å	1.32Å	Aromatic
N1	C6	sing	0.00Å	1.39Å	Aromatic
C4	N2	doub	0.00Å	1.33Å	Aromatic
N2	C5	sing	0.00Å	1.37Å	Aromatic
C5	C6	doub	0.00Å	1.32Å	Aromatic
N3	C7	sing	0.00Å	1.31Å	Aromatic
N3	C9	sing	0.00Å	1.38Å	Aromatic
C7	N4	doub	0.00Å	1.33Å	Aromatic
N4	C8	sing	0.00Å	1.32Å	Aromatic
C8	C9	doub	0.00Å	1.35Å	Aromatic
C6	H61	sing	0.00Å	1.08Å
C5	H51	sing	0.00Å	1.08Å
C4	H41	sing	0.00Å	1.08Å
C7	H71	sing	0.00Å	1.08Å
C9	H91	sing	0.00Å	1.08Å
C8	H81	sing	0.00Å	1.08Å
RE	C1	sing	0.00Å	1.88Å
RE	C2	sing	0.00Å	1.91Å
RE	C3	sing	0.00Å	1.90Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	RE	N3	82.8°	90.0°
RE	N1	C4	125.3°	90.0°
RE	N1	C6	129.8°	90.0°
N1	RE	C1	91.6°	90.0°
N1	RE	C2	176.7°	90.0°
N1	RE	C3	94.0°	90.0°
RE	N3	C7	128.2°	90.0°
RE	N3	C9	126.6°	90.0°
N3	RE	C1	94.3°	90.0°
N3	RE	C2	93.9°	90.0°
N3	RE	C3	174.7°	90.0°
O1	C1	RE	179.7°	90.0°
O2	C2	RE	179.5°	90.0°
O3	C3	RE	179.1°	90.0°
C4	N1	C6	104.9°	90.0°
N1	C4	N2	111.5°	90.0°
N1	C4	H41	124.3°	90.0°
N1	C6	C5	109.2°	90.0°
N1	C6	H61	125.4°	90.0°
C4	N2	C5	107.1°	90.0°
N2	C4	H41	124.3°	90.0°
N2	C5	C6	107.3°	90.0°
N2	C5	H51	126.3°	90.0°
C5	C6	H61	125.4°	90.0°
C6	C5	H51	126.4°	90.0°
C7	N3	C9	105.2°	90.0°
N3	C7	N4	110.8°	90.0°
N3	C7	H71	124.6°	90.0°
N3	C9	C8	108.5°	90.0°
N3	C9	H91	125.7°	90.0°
C7	N4	C8	108.5°	90.0°
N4	C7	H71	124.6°	90.0°
N4	C8	C9	107.0°	90.0°
N4	C8	H81	126.5°	90.0°
C8	C9	H91	125.7°	90.0°
C9	C8	H81	126.5°	90.0°
C1	RE	C2	88.0°	90.0°
C1	RE	C3	89.9°	90.0°
C2	RE	C3	89.4°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	RE	N3	C1	91.1°	90.0°
N1	RE	N3	C2	179.4°	90.0°
N1	RE	N3	C3	52.4°	90.0°
N1	RE	C1	O1	76.5°	90.0°
N1	RE	C2	O2	40.4°	90.0°
N1	RE	C3	O3	177.2°	90.0°
RE	N1	C4	C6	179.4°	90.0°
RE	N1	C4	N2	180.0°	90.0°
RE	N1	C6	C5	179.7°	90.0°
N1	RE	N3	C7	80.6°	90.0°
N1	RE	N3	C9	99.3°	90.0°
RE	N1	C6	H61	0.3°	90.0°
RE	N1	C4	H41	0.0°	90.0°
N1	RE	C1	C2	176.7°	90.0°
N1	RE	C1	C3	94.0°	90.0°
N1	RE	C2	C3	174.3°	90.0°
N3	RE	C1	O1	6.4°	90.0°
N3	RE	C2	O2	50.3°	90.0°
N3	RE	C3	O3	130.8°	90.0°
N3	RE	N1	C4	61.1°	90.0°
N3	RE	N1	C6	118.2°	90.0°
RE	N3	C7	C9	179.9°	90.0°
RE	N3	C7	N4	180.0°	90.0°
RE	N3	C9	C8	179.9°	90.0°
RE	N3	C7	H71	0.0°	90.0°
RE	N3	C9	H91	0.1°	90.0°
N3	RE	C1	C2	93.8°	90.0°
N3	RE	C1	C3	176.9°	90.0°
N3	RE	C2	C3	175.9°	90.0°
O1	C1	RE	C2	100.1°	90.0°
O1	C1	RE	C3	170.5°	90.0°
O2	C2	RE	C1	44.0°	90.0°
O2	C2	RE	C3	133.9°	90.0°
O3	C3	RE	C1	85.6°	90.0°
O3	C3	RE	C2	2.4°	90.0°
N1	C4	N2	H41	180.0°	90.0°
N1	C4	N2	C5	0.6°	90.0°
C4	N1	C6	C5	0.3°	90.0°
C4	N1	C6	H61	179.7°	90.0°
C4	N1	RE	C1	155.3°	90.0°
C4	N1	RE	C2	71.0°	90.0°
C4	N1	RE	C3	114.7°	90.0°
C6	N1	C4	N2	0.6°	90.0°
N1	C6	C5	N2	0.0°	90.0°
N1	C6	C5	H61	180.0°	90.0°
N1	C6	C5	H51	180.0°	90.0°
C6	N1	C4	H41	179.5°	90.0°
C6	N1	RE	C1	24.0°	90.0°
C6	N1	RE	C2	108.2°	90.0°
C6	N1	RE	C3	66.0°	90.0°
C4	N2	C5	C6	0.3°	90.0°
C4	N2	C5	H51	179.7°	90.0°
N2	C5	C6	H51	180.0°	90.0°
N2	C5	C6	H61	180.0°	90.0°
C5	N2	C4	H41	179.4°	90.0°
N3	C7	N4	H71	180.0°	90.0°
N3	C7	N4	C8	0.1°	90.0°
C7	N3	C9	C8	0.1°	90.0°
C7	N3	C9	H91	179.8°	90.0°
C7	N3	RE	C1	171.7°	90.0°
C7	N3	RE	C2	100.0°	90.0°
C7	N3	RE	C3	28.2°	90.0°
C9	N3	C7	N4	0.0°	90.0°
N3	C9	C8	N4	0.2°	90.0°
N3	C9	C8	H91	180.0°	90.0°
C9	N3	C7	H71	180.0°	90.0°
N3	C9	C8	H81	179.8°	90.0°
C9	N3	RE	C1	8.2°	90.0°
C9	N3	RE	C2	80.1°	90.0°
C9	N3	RE	C3	151.7°	90.0°
C7	N4	C8	C9	0.1°	90.0°
C7	N4	C8	H81	179.9°	90.0°
N4	C8	C9	H81	180.0°	90.0°
C8	N4	C7	H71	179.9°	90.0°
N4	C8	C9	H91	179.8°	90.0°
H61	C6	C5	H51	0.0°	90.0°
H91	C9	C8	H81	0.2°	90.0°
C1	RE	C2	C3	89.9°	90.0°

Release date:	2024-05-01
Definition date:	2023-09-12
Last modified:	2024-04-26
Release status:	REL
Processing site:	PDBE
Derived from:	8QCU