VHD
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.53Å | 1.53Å | |
C2 | C3 | sing | 1.53Å | 1.54Å | |
C2 | C4 | sing | 1.51Å | 1.52Å | |
C4 | C5 | sing | 1.38Å | 1.40Å | Aromatic |
C4 | C21 | doub | 1.39Å | 1.42Å | Aromatic |
C5 | C6 | doub | 1.40Å | 1.40Å | Aromatic |
C6 | C7 | sing | 1.47Å | 1.50Å | |
C6 | C18 | sing | 1.40Å | 1.41Å | Aromatic |
C7 | O8 | doub | 1.22Å | 1.22Å | |
C7 | N9 | sing | 1.35Å | 1.38Å | |
N9 | C10 | sing | 1.47Å | 1.48Å | |
N9 | C17 | sing | 1.47Å | 1.47Å | |
C10 | C11 | sing | 1.51Å | 1.51Å | |
C11 | C12 | sing | 1.38Å | 1.39Å | Aromatic |
C11 | C16 | doub | 1.38Å | 1.40Å | Aromatic |
C12 | C13 | doub | 1.38Å | 1.38Å | Aromatic |
C13 | C14 | sing | 1.38Å | 1.38Å | Aromatic |
C14 | C15 | doub | 1.38Å | 1.39Å | Aromatic |
C15 | C16 | sing | 1.39Å | 1.39Å | Aromatic |
C16 | C17 | sing | 1.51Å | 1.50Å | |
C18 | O19 | sing | 1.36Å | 1.37Å | |
C18 | C20 | doub | 1.38Å | 1.39Å | Aromatic |
C20 | C21 | sing | 1.39Å | 1.39Å | Aromatic |
C21 | O22 | sing | 1.36Å | 1.36Å | |
C1 | H11C | sing | 1.09Å | 1.10Å | |
C1 | H12C | sing | 1.09Å | 1.10Å | |
C1 | H13C | sing | 1.09Å | 1.10Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C3 | H31C | sing | 1.09Å | 1.10Å | |
C3 | H32C | sing | 1.09Å | 1.10Å | |
C3 | H33C | sing | 1.09Å | 1.10Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C10 | H101 | sing | 1.09Å | 1.10Å | |
C10 | H102 | sing | 1.09Å | 1.10Å | |
C17 | H171 | sing | 1.09Å | 1.10Å | |
C17 | H172 | sing | 1.09Å | 1.10Å | |
C12 | H12 | sing | 1.08Å | 1.08Å | |
C13 | H13 | sing | 1.08Å | 1.08Å | |
C14 | H14 | sing | 1.08Å | 1.08Å | |
C15 | H15 | sing | 1.08Å | 1.08Å | |
O19 | H19 | sing | 0.97Å | 0.95Å | |
C20 | H20 | sing | 1.08Å | 1.08Å | |
O22 | H22 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C1 | C2 | C3 | 109.9° | 109.5° |
C1 | C2 | C4 | 110.2° | 109.4° |
C2 | C1 | H11C | 109.5° | 109.5° |
C2 | C1 | H12C | 109.5° | 109.5° |
C2 | C1 | H13C | 109.5° | 109.5° |
C1 | C2 | H2 | 109.9° | 109.5° |
C3 | C2 | C4 | 112.8° | 109.5° |
C3 | C2 | H2 | 107.1° | 109.5° |
C2 | C3 | H31C | 109.5° | 109.5° |
C2 | C3 | H32C | 109.5° | 109.4° |
C2 | C3 | H33C | 109.5° | 109.4° |
C2 | C4 | C5 | 120.1° | 119.9° |
C2 | C4 | C21 | 121.2° | 119.9° |
C4 | C2 | H2 | 106.8° | 109.5° |
C5 | C4 | C21 | 118.5° | 120.3° |
C4 | C5 | C6 | 121.0° | 119.9° |
C4 | C5 | H5 | 119.5° | 120.0° |
C4 | C21 | C20 | 120.5° | 120.3° |
C4 | C21 | O22 | 121.0° | 119.9° |
C5 | C6 | C7 | 120.3° | 120.1° |
C5 | C6 | C18 | 119.3° | 119.8° |
C6 | C5 | H5 | 119.5° | 120.0° |
C7 | C6 | C18 | 120.2° | 120.1° |
C6 | C7 | O8 | 120.3° | 120.1° |
C6 | C7 | N9 | 117.7° | 120.0° |
C6 | C18 | O19 | 119.7° | 120.1° |
C6 | C18 | C20 | 120.4° | 119.7° |
O8 | C7 | N9 | 121.8° | 120.0° |
C7 | N9 | C10 | 124.1° | 126.6° |
C7 | N9 | C17 | 123.5° | 126.6° |
C10 | N9 | C17 | 112.3° | 106.9° |
N9 | C10 | C11 | 102.3° | 107.7° |
N9 | C10 | H101 | 111.9° | 109.8° |
N9 | C10 | H102 | 113.5° | 109.8° |
N9 | C17 | C16 | 102.5° | 107.6° |
N9 | C17 | H171 | 111.9° | 109.8° |
N9 | C17 | H172 | 113.3° | 109.8° |
C10 | C11 | C12 | 130.0° | 131.2° |
C10 | C11 | C16 | 110.4° | 108.9° |
C11 | C10 | H101 | 111.9° | 109.9° |
C11 | C10 | H102 | 113.4° | 109.9° |
C12 | C11 | C16 | 119.5° | 120.0° |
C11 | C12 | C13 | 120.2° | 120.1° |
C11 | C12 | H12 | 119.9° | 120.0° |
C11 | C16 | C15 | 119.8° | 119.9° |
C11 | C16 | C17 | 110.6° | 108.9° |
C12 | C13 | C14 | 120.2° | 120.0° |
C13 | C12 | H12 | 119.9° | 119.9° |
C12 | C13 | H13 | 119.9° | 120.0° |
C13 | C14 | C15 | 120.2° | 119.9° |
C14 | C13 | H13 | 119.9° | 120.0° |
C13 | C14 | H14 | 119.9° | 120.0° |
C14 | C15 | C16 | 120.1° | 120.1° |
C15 | C14 | H14 | 119.9° | 120.0° |
C14 | C15 | H15 | 120.0° | 120.0° |
C15 | C16 | C17 | 129.7° | 131.2° |
C16 | C15 | H15 | 120.0° | 119.9° |
C16 | C17 | H171 | 111.9° | 109.9° |
C16 | C17 | H172 | 113.3° | 109.7° |
O19 | C18 | C20 | 119.9° | 120.1° |
C18 | O19 | H19 | 109.5° | 114.0° |
C18 | C20 | C21 | 120.4° | 120.0° |
C18 | C20 | H20 | 119.8° | 120.0° |
C20 | C21 | O22 | 118.5° | 119.8° |
C21 | C20 | H20 | 119.8° | 120.0° |
C21 | O22 | H22 | 109.5° | 114.0° |
H11C | C1 | H12C | 109.4° | 109.4° |
H11C | C1 | H13C | 109.4° | 109.5° |
H12C | C1 | H13C | 109.5° | 109.5° |
H31C | C3 | H32C | 109.5° | 109.5° |
H31C | C3 | H33C | 109.5° | 109.5° |
H32C | C3 | H33C | 109.5° | 109.5° |
H101 | C10 | H102 | 104.1° | 109.8° |
H171 | C17 | H172 | 104.2° | 109.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C1 | C2 | C3 | C4 | 123.5° | 119.9° |
C1 | C2 | C3 | H2 | 119.3° | 120.0° |
C1 | C2 | C4 | H2 | 119.3° | 120.0° |
C1 | C2 | C4 | C5 | 81.4° | 60.0° |
C1 | C2 | C4 | C21 | 93.0° | 119.7° |
C2 | C1 | H11C | H12C | 120.0° | 120.0° |
C2 | C1 | H11C | H13C | 120.0° | 120.0° |
C2 | C1 | H12C | H13C | 120.0° | 120.0° |
C1 | C2 | C3 | H31C | 71.9° | 60.0° |
C1 | C2 | C3 | H32C | 168.1° | 180.0° |
C1 | C2 | C3 | H33C | 48.1° | 60.0° |
C3 | C2 | C4 | H2 | 117.4° | 120.0° |
C3 | C2 | C4 | C5 | 41.9° | 60.0° |
C3 | C2 | C4 | C21 | 143.7° | 120.3° |
C3 | C2 | C1 | H11C | 122.2° | 60.1° |
C3 | C2 | C1 | H12C | 117.8° | 180.0° |
C3 | C2 | C1 | H13C | 2.3° | 59.9° |
C2 | C3 | H31C | H32C | 120.0° | 120.0° |
C2 | C3 | H31C | H33C | 120.0° | 120.0° |
C2 | C3 | H32C | H33C | 120.0° | 119.9° |
C2 | C4 | C5 | C21 | 174.5° | 179.8° |
C2 | C4 | C5 | C6 | 175.0° | 180.0° |
C2 | C4 | C21 | C20 | 175.6° | 179.7° |
C2 | C4 | C21 | O22 | 6.8° | 0.1° |
C4 | C2 | C1 | H11C | 112.8° | 180.0° |
C4 | C2 | C1 | H12C | 7.2° | 60.0° |
C4 | C2 | C1 | H13C | 127.2° | 60.0° |
C4 | C2 | C3 | H31C | 51.6° | 60.0° |
C4 | C2 | C3 | H32C | 68.4° | 60.1° |
C4 | C2 | C3 | H33C | 171.6° | 180.0° |
C2 | C4 | C5 | H5 | 5.0° | 0.0° |
C4 | C5 | C6 | H5 | 180.0° | 180.0° |
C4 | C5 | C6 | C7 | 176.8° | 180.0° |
C4 | C5 | C6 | C18 | 1.0° | 0.0° |
C5 | C4 | C21 | C20 | 1.2° | 0.5° |
C5 | C4 | C21 | O22 | 178.7° | 179.7° |
C5 | C4 | C2 | H2 | 159.3° | 180.0° |
C21 | C4 | C5 | C6 | 0.4° | 0.3° |
C4 | C21 | C20 | C18 | 0.5° | 0.5° |
C4 | C21 | C20 | O22 | 177.6° | 179.8° |
C21 | C4 | C2 | H2 | 26.3° | 0.2° |
C21 | C4 | C5 | H5 | 179.6° | 179.8° |
C4 | C21 | C20 | H20 | 179.6° | 179.7° |
C4 | C21 | O22 | H22 | 97.6° | 90.0° |
C5 | C6 | C7 | C18 | 175.8° | 179.9° |
C5 | C6 | C7 | O8 | 112.4° | 136.0° |
C5 | C6 | C7 | N9 | 71.7° | 43.9° |
C5 | C6 | C18 | O19 | 178.9° | 180.0° |
C5 | C6 | C18 | C20 | 1.7° | 0.0° |
C6 | C7 | O8 | N9 | 175.7° | 180.0° |
C6 | C7 | N9 | C10 | 178.7° | 174.7° |
C6 | C7 | N9 | C17 | 4.0° | 5.0° |
C7 | C6 | C18 | O19 | 3.0° | 0.0° |
C7 | C6 | C18 | C20 | 177.5° | 180.0° |
C7 | C6 | C5 | H5 | 3.2° | 0.1° |
C18 | C6 | C7 | O8 | 71.8° | 44.0° |
C18 | C6 | C7 | N9 | 104.1° | 136.0° |
C6 | C18 | O19 | C20 | 179.5° | 180.0° |
C6 | C18 | C20 | C21 | 0.9° | 0.3° |
C18 | C6 | C5 | H5 | 179.0° | 180.0° |
C6 | C18 | O19 | H19 | 161.9° | 90.1° |
C6 | C18 | C20 | H20 | 179.0° | 180.0° |
O8 | C7 | N9 | C10 | 5.4° | 5.3° |
O8 | C7 | N9 | C17 | 171.8° | 175.0° |
C7 | N9 | C10 | C17 | 177.5° | 179.7° |
C7 | N9 | C10 | C11 | 164.1° | 180.0° |
C7 | N9 | C17 | C16 | 163.7° | 179.8° |
C7 | N9 | C10 | H101 | 75.9° | 60.4° |
C7 | N9 | C10 | H102 | 41.6° | 60.4° |
C7 | N9 | C17 | H171 | 43.7° | 60.5° |
C7 | N9 | C17 | H172 | 73.8° | 60.5° |
N9 | C10 | C11 | H101 | 120.0° | 119.5° |
N9 | C10 | C11 | H102 | 122.6° | 119.6° |
N9 | C10 | C11 | C12 | 172.2° | 180.0° |
N9 | C10 | C11 | C16 | 7.4° | 0.0° |
C10 | N9 | C17 | C16 | 13.8° | 0.4° |
N9 | C10 | H101 | H102 | 122.9° | 120.8° |
C10 | N9 | C17 | H171 | 133.9° | 119.3° |
C10 | N9 | C17 | H172 | 108.7° | 119.8° |
C17 | N9 | C10 | C11 | 13.4° | 0.3° |
N9 | C17 | C16 | C11 | 8.7° | 0.4° |
N9 | C17 | C16 | C15 | 172.3° | 179.9° |
N9 | C17 | C16 | H171 | 120.0° | 119.6° |
N9 | C17 | C16 | H172 | 122.5° | 119.5° |
C17 | N9 | C10 | H101 | 106.6° | 119.9° |
C17 | N9 | C10 | H102 | 135.9° | 119.3° |
N9 | C17 | H171 | H172 | 122.8° | 120.9° |
C10 | C11 | C12 | C16 | 179.6° | 180.0° |
C10 | C11 | C12 | C13 | 179.7° | 180.0° |
C10 | C11 | C16 | C15 | 179.9° | 180.0° |
C10 | C11 | C16 | C17 | 0.8° | 0.3° |
C11 | C10 | H101 | H102 | 122.9° | 121.0° |
C10 | C11 | C12 | H12 | 0.3° | 0.0° |
C11 | C12 | C13 | H12 | 180.0° | 180.0° |
C11 | C12 | C13 | C14 | 0.1° | 0.0° |
C12 | C11 | C16 | C15 | 0.4° | 0.0° |
C12 | C11 | C16 | C17 | 179.5° | 179.8° |
C12 | C11 | C10 | H101 | 67.8° | 60.5° |
C12 | C11 | C10 | H102 | 49.6° | 60.5° |
C11 | C12 | C13 | H13 | 180.0° | 180.0° |
C16 | C11 | C12 | C13 | 0.1° | 0.0° |
C11 | C16 | C15 | C14 | 0.6° | 0.0° |
C11 | C16 | C15 | C17 | 178.9° | 179.7° |
C16 | C11 | C10 | H101 | 112.6° | 119.5° |
C16 | C11 | C10 | H102 | 130.0° | 119.5° |
C11 | C16 | C17 | H171 | 128.7° | 119.2° |
C11 | C16 | C17 | H172 | 113.8° | 119.9° |
C16 | C11 | C12 | H12 | 179.9° | 180.0° |
C11 | C16 | C15 | H15 | 179.5° | 180.0° |
C12 | C13 | C14 | H13 | 180.0° | 180.0° |
C12 | C13 | C14 | C15 | 0.1° | 0.0° |
C12 | C13 | C14 | H14 | 179.9° | 179.9° |
C13 | C14 | C15 | H14 | 180.0° | 179.9° |
C13 | C14 | C15 | C16 | 0.4° | 0.0° |
C14 | C13 | C12 | H12 | 179.9° | 180.0° |
C13 | C14 | C15 | H15 | 179.7° | 180.0° |
C14 | C15 | C16 | H15 | 180.0° | 180.0° |
C14 | C15 | C16 | C17 | 179.4° | 179.7° |
C15 | C14 | C13 | H13 | 179.9° | 179.9° |
C15 | C16 | C17 | H171 | 52.3° | 60.5° |
C15 | C16 | C17 | H172 | 65.2° | 60.4° |
C16 | C15 | C14 | H14 | 179.6° | 179.9° |
C16 | C17 | H171 | H172 | 122.8° | 120.8° |
C17 | C16 | C15 | H15 | 0.6° | 0.3° |
O19 | C18 | C20 | C21 | 179.6° | 179.7° |
O19 | C18 | C20 | H20 | 0.5° | 0.0° |
C18 | C20 | C21 | H20 | 180.0° | 179.7° |
C18 | C20 | C21 | O22 | 178.1° | 179.7° |
C20 | C18 | O19 | H19 | 18.6° | 89.9° |
C20 | C21 | O22 | H22 | 80.1° | 89.8° |
O22 | C21 | C20 | H20 | 1.9° | 0.0° |
H11C | C1 | H12C | H13C | 119.9° | 120.0° |
H11C | C1 | C2 | H2 | 4.6° | 60.0° |
H12C | C1 | C2 | H2 | 124.6° | 60.0° |
H13C | C1 | C2 | H2 | 115.3° | 180.0° |
H2 | C2 | C3 | H31C | 168.8° | 180.0° |
H2 | C2 | C3 | H32C | 48.8° | 60.0° |
H2 | C2 | C3 | H33C | 71.2° | 60.0° |
H31C | C3 | H32C | H33C | 120.0° | 120.0° |
H12 | C12 | C13 | H13 | 0.0° | 0.0° |
H13 | C13 | C14 | H14 | 0.1° | 0.0° |
H14 | C14 | C15 | H15 | 0.3° | 0.1° |