VGX
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C01 | C02 | sing | 1.53Å | 1.51Å | |
| O06 | C04 | doub | 1.21Å | 1.27Å | |
| C02 | C03 | sing | 1.51Å | 1.50Å | |
| C04 | C03 | sing | 1.49Å | 1.50Å | |
| C04 | O05 | sing | 1.35Å | 1.26Å | |
| C03 | O07 | doub | 1.21Å | 1.21Å | |
| C01 | O1 | sing | 1.43Å | 1.74Å | |
| C01 | H1 | sing | 1.09Å | 1.10Å | |
| C01 | H2 | sing | 1.09Å | 1.10Å | |
| C02 | H3 | sing | 1.09Å | 1.10Å | |
| C02 | H4 | sing | 1.09Å | 1.10Å | |
| O05 | H5 | sing | 0.97Å | 0.95Å | |
| O1 | H6 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C01 | C02 | C03 | 103.3° | 109.5° |
| C02 | C01 | O1 | 125.7° | 109.4° |
| C02 | C01 | H1 | 105.3° | 109.5° |
| C02 | C01 | H2 | 105.3° | 109.5° |
| C01 | C02 | H3 | 111.0° | 109.5° |
| C01 | C02 | H4 | 111.0° | 109.5° |
| O06 | C04 | C03 | 117.3° | 120.0° |
| O06 | C04 | O05 | 125.6° | 120.0° |
| C02 | C03 | C04 | 118.5° | 120.0° |
| C02 | C03 | O07 | 121.1° | 120.0° |
| C03 | C02 | H3 | 111.0° | 109.4° |
| C03 | C02 | H4 | 111.0° | 109.4° |
| C03 | C04 | O05 | 117.0° | 120.0° |
| C04 | C03 | O07 | 120.4° | 120.0° |
| C04 | O05 | H5 | 109.5° | 117.0° |
| O1 | C01 | H1 | 105.3° | 109.5° |
| O1 | C01 | H2 | 105.3° | 109.5° |
| C01 | O1 | H6 | 109.5° | 114.0° |
| H1 | C01 | H2 | 109.5° | 109.5° |
| H3 | C02 | H4 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C01 | C02 | C03 | H3 | 119.0° | 120.0° |
| C01 | C02 | C03 | H4 | 119.0° | 120.0° |
| C01 | C02 | C03 | C04 | 79.5° | 180.0° |
| C01 | C02 | C03 | O07 | 97.8° | 0.0° |
| C02 | C01 | O1 | H1 | 122.2° | 120.0° |
| C02 | C01 | O1 | H2 | 122.2° | 120.0° |
| C02 | C01 | H1 | H2 | 112.7° | 120.0° |
| C01 | C02 | H3 | H4 | 122.8° | 120.1° |
| C02 | C01 | O1 | H6 | 48.0° | 180.0° |
| O06 | C04 | C03 | C02 | 98.0° | 0.0° |
| O06 | C04 | C03 | O05 | 179.5° | 180.0° |
| O06 | C04 | C03 | O07 | 79.3° | 180.0° |
| O06 | C04 | O05 | H5 | 0.0° | 0.0° |
| C02 | C03 | C04 | O07 | 177.3° | 180.0° |
| C02 | C03 | C04 | O05 | 81.5° | 180.0° |
| C03 | C02 | C01 | O1 | 15.0° | 180.0° |
| C03 | C02 | C01 | H1 | 137.2° | 60.0° |
| C03 | C02 | C01 | H2 | 107.2° | 60.0° |
| C03 | C02 | H3 | H4 | 122.9° | 120.0° |
| C04 | C03 | C02 | H3 | 39.5° | 60.0° |
| C04 | C03 | C02 | H4 | 161.5° | 60.0° |
| C03 | C04 | O05 | H5 | 179.5° | 180.0° |
| O05 | C04 | C03 | O07 | 101.2° | 0.0° |
| O07 | C03 | C02 | H3 | 143.2° | 120.0° |
| O07 | C03 | C02 | H4 | 21.2° | 120.0° |
| O1 | C01 | H1 | H2 | 112.7° | 120.0° |
| O1 | C01 | C02 | H3 | 134.0° | 60.0° |
| O1 | C01 | C02 | H4 | 104.0° | 60.0° |
| H1 | C01 | C02 | H3 | 103.8° | 60.0° |
| H1 | C01 | C02 | H4 | 18.1° | 180.0° |
| H1 | C01 | O1 | H6 | 170.2° | 60.0° |
| H2 | C01 | C02 | H3 | 11.8° | 180.0° |
| H2 | C01 | C02 | H4 | 133.8° | 60.0° |
| H2 | C01 | O1 | H6 | 74.2° | 60.0° |
