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SummaryGeometryRelated PDB entries

VGD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CLACAHsing1.74Å1.79Å
CAHCACdoub1.39Å1.39ÅAromatic
CAHCAEsing1.38Å1.40ÅAromatic
CACCADsing1.38Å1.39ÅAromatic
CADCAKdoub1.40Å1.39ÅAromatic
CAKCAJsing1.40Å1.41ÅAromatic
CAKNAGsing1.36Å1.35ÅAromatic
CAJCAEdoub1.39Å1.39ÅAromatic
CAJNAFsing1.39Å1.35ÅAromatic
NAGCAIdoub1.31Å1.34ÅAromatic
CAINAFsing1.36Å1.34ÅAromatic
CAINAAsing1.38Å1.36Å
CACHACsing1.08Å1.08Å
CADHADsing1.08Å1.08Å
CAEHAEsing1.08Å1.08Å
NAFHNAFsing0.97Å1.00Å
NAAHNAAsing0.97Å1.00Å
NAAHNABsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CLACAHCAC118.4°119.8°
CLACAHCAE121.1°119.8°
CACCAHCAE120.5°120.4°
CAHCACCAD120.9°120.5°
CAHCACHAC119.6°119.8°
CAHCAECAJ118.9°119.8°
CAHCAEHAE120.5°120.1°
CACCADCAK119.0°119.8°
CADCACHAC119.5°119.8°
CACCADHAD120.5°120.1°
CADCAKCAJ120.4°119.5°
CADCAKNAG130.5°133.4°
CAKCADHAD120.5°120.1°
CAJCAKNAG109.0°107.1°
CAKCAJCAE120.2°120.0°
CAKCAJNAF108.0°106.1°
CAKNAGCAI103.5°109.6°
CAECAJNAF131.8°133.9°
CAJCAEHAE120.5°120.1°
CAJNAFCAI104.3°107.2°
CAJNAFHNAF127.9°126.4°
NAGCAINAF115.2°109.9°
NAGCAINAA122.3°125.0°
NAFCAINAA122.5°125.1°
CAINAFHNAF127.9°126.4°
CAINAAHNAA109.5°120.0°
CAINAAHNAB109.5°120.0°
HNAANAAHNAB109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CLACAHCACCAE180.0°179.7°
CLACAHCACCAD180.0°180.0°
CLACAHCAECAJ179.9°179.8°
CLACAHCACHAC0.0°0.0°
CLACAHCAEHAE0.1°0.1°
CAHCACCADHAC180.0°180.0°
CAHCACCADCAK0.0°0.0°
CACCAHCAECAJ0.1°0.5°
CAHCACCADHAD180.0°180.0°
CACCAHCAEHAE179.9°179.8°
CAECAHCACCAD0.0°0.3°
CAHCAECAJCAK0.1°0.5°
CAHCAECAJHAE180.0°179.7°
CAHCAECAJNAF179.9°179.8°
CAECAHCACHAC180.0°179.7°
CACCADCAKHAD180.0°179.9°
CACCADCAKCAJ0.0°0.0°
CACCADCAKNAG179.5°180.0°
CADCAKCAJNAG179.6°180.0°
CADCAKCAJCAE0.1°0.3°
CADCAKCAJNAF179.9°180.0°
CADCAKNAGCAI179.7°180.0°
CAKCADCACHAC180.0°179.9°
CAKCAJCAENAF180.0°179.6°
CAJCAKNAGCAI0.8°0.0°
CAKCAJNAFCAI0.3°0.0°
CAJCAKCADHAD180.0°180.0°
CAKCAJCAEHAE179.8°179.8°
CAKCAJNAFHNAF179.7°180.0°
NAGCAKCAJCAE179.7°179.8°
NAGCAKCAJNAF0.3°0.0°
CAKNAGCAINAF1.1°0.0°
CAKNAGCAINAA180.0°180.0°
NAGCAKCADHAD0.5°0.1°
CAECAJNAFCAI179.7°179.7°
CAECAJNAFHNAF0.4°0.4°
CAJNAFCAINAG0.9°0.0°
CAJNAFCAIHNAF180.0°180.0°
CAJNAFCAINAA179.8°180.0°
NAFCAJCAEHAE0.1°0.1°
NAGCAINAFNAA178.9°180.0°
NAGCAINAFHNAF179.1°179.9°
NAGCAINAAHNAA126.3°0.1°
NAGCAINAAHNAB6.3°179.9°
NAFCAINAAHNAA54.9°180.0°
NAFCAINAAHNAB174.9°0.0°
NAACAINAFHNAF0.2°0.0°
CAINAAHNAAHNAB120.0°180.0°
HACCACCADHAD0.0°0.0°

246704

PDB entries from 2025-12-24

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