Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VF5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O13P3doub1.48Å1.48Å
O2Pdoub1.48Å1.53Å
O6P1doub1.48Å1.48Å
P3O14sing1.63Å1.58Å
P3O12sing1.61Å1.52Å
P3O11sing1.63Å1.58Å
O5P1sing1.61Å1.53Å
O14C8sing1.45Å1.45Å
P1O4sing1.61Å1.59Å
P1O7sing1.61Å1.59Å
PO4sing1.61Å1.59Å
PO3sing1.61Å1.48Å
PO1sing1.61Å1.59Å
C5Osing1.44Å1.45Å
C5C6sing1.53Å1.51Å
C5C7sing1.55Å1.52Å
OC4sing1.44Å1.42Å
O11C7sing1.43Å1.45Å
C4C8sing1.54Å1.53Å
C4N3sing1.47Å1.47Å
C6O1sing1.43Å1.44Å
C8C7sing1.55Å1.53Å
O7P2sing1.61Å1.60Å
N3C1sing1.37Å1.38ÅAromatic
N3C3sing1.36Å1.37ÅAromatic
O10P2doub1.48Å1.49Å
N1C1sing1.34Å1.35Å
N1Cdoub1.31Å1.33Å
NCsing1.37Å1.34Å
C1C2doub1.40Å1.38ÅAromatic
P2O9sing1.61Å1.53Å
P2O8sing1.61Å1.53Å
C3N2doub1.30Å1.31ÅAromatic
CN4sing1.36Å1.37Å
C2N2sing1.36Å1.39ÅAromatic
C2C9sing1.41Å1.43Å
N4C9sing1.35Å1.38Å
C9O15doub1.22Å1.23Å
C3H1sing1.08Å1.08Å
O3H2sing0.97Å0.95Å
C4H3sing1.09Å1.10Å
C5H4sing1.09Å1.10Å
O5H5sing0.97Å0.95Å
C6H6sing1.09Å1.10Å
C6H7sing1.09Å1.10Å
C7H8sing1.09Å1.10Å
O8H9sing0.97Å0.95Å
O9H10sing0.97Å0.95Å
NH11sing0.97Å1.00Å
NH12sing0.97Å1.00Å
C8H13sing1.09Å1.10Å
N4H14sing0.97Å1.00Å
O12H15sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O13P3O14114.9°110.9°
O13P3O12110.5°110.7°
O13P3O11116.1°110.9°
O2PO4107.0°109.5°
O2PO3114.6°109.5°
O2PO1107.3°109.4°
O6P1O5115.9°109.5°
O6P1O4112.0°109.5°
O6P1O7111.6°109.5°
O14P3O12108.4°110.9°
O14P3O1198.7°102.2°
P3O14C8110.5°101.8°
O12P3O11107.5°110.9°
P3O12H15109.5°114.0°
P3O11C7111.6°105.0°
O5P1O4107.1°109.4°
O5P1O7107.3°109.5°
P1O5H5109.5°114.0°
O14C8C4112.5°107.7°
O14C8C7105.1°107.3°
O14C8H13112.4°112.7°
O4P1O7101.8°109.4°
P1O4P133.4°134.0°
P1O7P2134.1°134.0°
O4PO3111.1°109.5°
O4PO1104.8°109.4°
O3PO1111.5°109.5°
PO3H2109.5°114.0°
PO1C6125.7°123.0°
OC5C6109.6°110.6°
OC5C7105.3°103.5°
C5OC4110.7°107.0°
OC5H4109.7°110.6°
C6C5C7114.8°110.6°
C5C6O1108.8°109.5°
C6C5H4108.8°110.5°
C5C6H6109.7°109.4°
C5C6H7109.6°109.4°
C5C7O11110.8°109.8°
C5C7C8103.3°102.4°
C7C5H4108.6°110.7°
C5C7H8111.6°111.2°
OC4C8107.6°107.4°
OC4N3108.5°109.8°
OC4H3109.9°110.0°
O11C7C8106.3°110.3°
O11C7H8112.7°111.5°
C8C4N3113.5°109.8°
C4C8C7104.0°103.9°
C8C4H3108.4°109.9°
C4C8H13111.2°112.4°
C4N3C1126.9°126.2°
C4N3C3127.2°126.3°
N3C4H3109.1°109.8°
O1C6H6109.7°109.5°
O1C6H7109.6°109.5°
C8C7H8111.5°111.2°
C7C8H13111.2°112.3°
O7P2O10110.7°109.5°
O7P2O9106.1°109.4°
O7P2O8105.6°109.5°
C1N3C3105.9°107.6°
N3C1N1125.8°134.3°
N3C1C2106.0°106.0°
N3C3N2113.3°109.8°
N3C3H1123.4°125.1°
O10P2O9112.9°109.5°
O10P2O8113.1°109.5°
C1N1C112.6°121.1°
N1C1C2128.2°119.7°
N1CN119.6°119.0°
N1CN4123.5°121.9°
NCN4116.9°119.1°
CNH11120.0°120.0°
CNH12120.0°120.0°
C1C2N2110.5°107.3°
C1C2C9118.4°118.6°
O9P2O8107.9°109.5°
P2O9H10109.5°114.0°
P2O8H9109.5°114.0°
C3N2C2104.3°109.4°
N2C3H1123.4°125.1°
CN4C9125.2°120.3°
CN4H14117.4°119.8°
N2C2C9131.1°134.2°
C2C9N4112.1°118.4°
C2C9O15127.3°120.8°
N4C9O15120.6°120.8°
C9N4H14117.4°119.9°
H6C6H7109.5°109.5°
H11NH12120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O13P3O14O12124.1°123.5°
O13P3O14O11124.1°118.3°
O13P3O12O11127.6°123.6°
O13P3O14C8144.3°152.7°
O13P3O11C7126.7°139.0°
O13P3O12H150.0°60.0°
O2PO4P185.0°45.1°
O2PO4O3125.8°120.0°
O2PO4O1113.7°120.0°
O2PO3O1122.1°120.0°
O2PO1C619.0°55.0°
O2PO3H20.0°180.0°
O6P1O5O4125.8°120.0°
O6P1O5O7125.5°120.1°
O6P1O4O7119.3°120.0°
O6P1O4P11.6°45.0°
O6P1O7P2143.6°40.0°
O6P1O5H50.0°180.0°
O14P3O12O11105.7°112.8°
O14P3O11C73.5°20.8°
P3O14C8C4141.4°146.6°
P3O14C8C728.9°35.3°
P3O14C8H1392.2°88.8°
O14P3O12H15126.7°63.5°
O12P3O14C891.6°83.9°
O12P3O11C7109.0°97.5°
O11P3O14C820.2°34.4°
P3O11C7C598.7°112.4°
P3O11C7C813.0°0.3°
P3O11C7H8135.4°123.8°
O11P3O12H15127.6°176.3°
O5P1O4O7112.5°120.0°
O5P1O4P139.8°75.0°
O5P1O7P215.6°80.1°
O14C8C7C591.3°93.2°
O14C8C4O98.2°115.8°
O14C8C7O1125.5°23.6°
O14C8C4C7113.2°113.6°
O14C8C4H13127.1°124.7°
O14C8C4N3141.8°124.9°
O14C8C7H13121.9°124.3°
O14C8C4H320.5°3.9°
O14C8C7H8148.7°147.9°
P1O4PO340.8°75.0°
P1O4PO1161.2°165.0°
O4P1O7P296.8°160.0°
O4P1O5H5125.8°60.0°
O7P1O4P107.7°165.0°
P1O7P2O106.3°44.9°
P1O7P2O9129.1°75.0°
P1O7P2O8116.6°165.0°
O7P1O5H5125.5°59.9°
O4PO3O1116.4°120.0°
O4PO1C694.6°175.0°
O4PO3H2121.4°60.0°
O3PO1C6145.2°65.0°
PO1C6C586.4°180.0°
O1PO3H2122.1°60.0°
PO1C6H6153.7°60.0°
PO1C6H733.5°60.0°
OC5C6C7118.2°114.1°
OC5C6H4119.9°122.9°
OC5C7H4117.4°118.6°
OC5C7O11143.5°154.1°
C5OC4C84.1°26.5°
C5OC4N3127.2°145.9°
OC5C6O1155.6°66.4°
OC5C7C830.0°36.9°
C5OC4H3113.6°93.1°
OC5C6H635.7°53.6°
OC5C6H784.5°173.5°
OC5C7H889.9°81.9°
C6C5C7H4122.0°122.9°
C6C5OC4145.7°158.4°
C6C5C7O1195.9°87.4°
C5C6O1H6119.9°120.0°
C5C6O1H7119.9°120.0°
C6C5C7C8150.6°155.4°
C5C6H6H7120.3°120.0°
C6C5C7H830.7°36.6°
C7C5OC421.7°39.9°
C5C7O11C8111.6°112.1°
C5C7O11H8125.9°123.8°
C5C7C8C427.1°20.7°
C7C5C6O137.4°179.5°
C5C7C8H8120.0°118.9°
C7C5C6H682.5°60.5°
C7C5C6H7157.3°59.5°
C5C7C8H13146.8°142.5°
OC4C8N3120.0°119.4°
OC4C8H3118.7°119.7°
OC4N3H3119.7°121.1°
OC4C8C715.0°2.2°
OC4N3C1175.1°157.1°
OC4N3C34.9°23.3°
C4OC5H495.0°78.7°
OC4C8H13134.7°119.5°
O11C7C8C4143.8°137.6°
O11C7C8H8123.2°124.3°
O11C7C5H426.1°35.5°
O11C7C8H1396.5°100.7°
C8C4N3H3120.9°121.0°
C4C8C7H13119.7°121.7°
C8C4N3C165.5°85.0°
C8C4N3C3114.5°94.6°
C4C8C7H892.9°98.1°
N3C4C8C7105.0°121.5°
C4N3C1C3180.0°179.6°
C4N3C1N10.6°0.3°
C4N3C1C2179.8°180.0°
C4N3C3N2179.8°180.0°
C4N3C3H10.2°0.2°
N3C4C8H1314.7°0.2°
O1C6C5H484.5°56.5°
O1C6H6H7120.3°120.1°
C7C8C4H3133.7°117.5°
C8C7C5H487.4°81.7°
O7P2O10O9118.8°120.0°
O7P2O10O8118.3°120.0°
O7P2O9O8112.8°120.0°
O7P2O8H9121.3°180.0°
O7P2O9H10121.5°60.0°
N3C1N1C2179.6°179.6°
N3C1N1C179.7°179.7°
C1N3C3N20.1°0.4°
N3C1C2N20.2°0.2°
N3C1C2C9179.9°179.8°
C1N3C3H1179.8°179.8°
C1N3C4H355.4°36.0°
C3N3C1N1179.4°180.0°
C3N3C1C20.2°0.4°
N3C3N2H1180.0°179.8°
N3C3N2C20.0°0.2°
C3N3C4H3124.6°144.4°
O10P2O9O8125.8°120.0°
O10P2O8H90.0°60.0°
O10P2O9H100.0°180.0°
C1N1CN179.9°180.0°
C1N1CN40.1°0.0°
N1C1C2N2179.4°180.0°
N1C1C2C90.3°0.1°
N1CNN4179.8°180.0°
CN1C1C20.1°0.1°
N1CN4C90.1°0.0°
N1CNH110.0°180.0°
N1CNH12180.0°0.0°
N1CN4H14179.8°180.0°
NCN4C9180.0°180.0°
CNH11H12180.0°180.0°
NCN4H140.0°0.0°
C1C2N2C30.1°0.0°
C1C2N2C9179.7°180.0°
C1C2C9N40.2°0.0°
C1C2C9O15179.9°180.0°
O9P2O8H9125.7°60.0°
O8P2O9H10125.8°60.0°
C3N2C2C9179.8°180.0°
CN4C9C20.0°0.0°
CN4C9H14180.0°180.0°
CN4C9O15179.9°179.9°
N4CNH11179.8°0.0°
N4CNH120.2°180.0°
N2C2C9N4179.5°180.0°
N2C2C9O150.4°0.1°
C2N2C3H1180.0°180.0°
C2C9N4O15179.9°179.9°
C2C9N4H14180.0°180.0°
O15C9N4H140.1°0.0°
H3C4C8H13106.6°120.8°
H4C5C6H6155.6°176.4°
H4C5C6H735.4°63.6°
H4C5C7H8152.7°159.5°
H8C7C8H1326.8°23.6°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon