VET
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.50Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | C6' | sing | 1.55Å | 1.54Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.54Å | 1.53Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C6' | C1' | sing | 1.55Å | 1.56Å | |
| C1' | N1 | sing | 1.46Å | 1.50Å | |
| N1 | C2 | sing | 1.35Å | 1.43Å | |
| N1 | C5 | sing | 1.47Å | 1.50Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.34Å | 1.46Å | |
| N3 | C4 | sing | 1.35Å | 1.45Å | |
| C4 | O4 | doub | 1.21Å | 1.22Å | |
| C4 | C5 | sing | 1.52Å | 1.54Å | |
| C5 | C6 | sing | 1.53Å | 1.53Å | |
| C5 | O6 | sing | 1.43Å | 1.38Å | |
| OP2 | H2P | sing | 0.97Å | 0.95Å | |
| OP3 | H3P | sing | 0.97Å | 0.95Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C6' | H6'' | sing | 1.09Å | 1.10Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C6 | H61C | sing | 1.09Å | 1.10Å | |
| C6 | H62C | sing | 1.09Å | 1.10Å | |
| C6 | H63C | sing | 1.09Å | 1.10Å | |
| O6 | HO6 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 118.4° | 109.4° |
| OP1 | P | O5' | 109.7° | 109.5° |
| OP1 | P | OP3 | 105.9° | 109.5° |
| OP2 | P | O5' | 107.4° | 109.4° |
| OP2 | P | OP3 | 110.8° | 109.5° |
| P | OP2 | H2P | 109.5° | 114.0° |
| O5' | P | OP3 | 103.7° | 109.5° |
| P | O5' | C5' | 119.6° | 123.0° |
| P | OP3 | H3P | 109.5° | 114.0° |
| O5' | C5' | C4' | 110.4° | 109.5° |
| O5' | C5' | H5' | 109.2° | 109.5° |
| O5' | C5' | H5'' | 109.0° | 109.5° |
| C5' | C4' | C3' | 113.9° | 110.5° |
| C5' | C4' | C6' | 110.3° | 110.5° |
| C4' | C5' | H5' | 109.2° | 109.5° |
| C4' | C5' | H5'' | 108.9° | 109.5° |
| C5' | C4' | H4' | 104.0° | 110.4° |
| C3' | C4' | C6' | 102.8° | 104.2° |
| C4' | C3' | O3' | 109.0° | 110.0° |
| C4' | C3' | C2' | 103.0° | 106.6° |
| C3' | C4' | H4' | 111.4° | 110.5° |
| C4' | C3' | H3' | 114.3° | 110.0° |
| C4' | C6' | C1' | 106.8° | 102.7° |
| C6' | C4' | H4' | 114.8° | 110.6° |
| C4' | C6' | H6' | 110.4° | 110.8° |
| C4' | C6' | H6'' | 111.0° | 110.8° |
| O3' | C3' | C2' | 110.8° | 110.1° |
| O3' | C3' | H3' | 107.0° | 110.0° |
| C3' | O3' | HA | 109.5° | 114.0° |
| C3' | C2' | C1' | 101.3° | 106.6° |
| C2' | C3' | H3' | 112.7° | 110.1° |
| C3' | C2' | H2' | 112.3° | 110.0° |
| C3' | C2' | H2'' | 114.0° | 110.0° |
| C2' | C1' | C6' | 104.0° | 104.2° |
| C2' | C1' | N1 | 117.4° | 110.5° |
| C1' | C2' | H2' | 112.3° | 110.0° |
| C1' | C2' | H2'' | 114.0° | 110.0° |
| C2' | C1' | H1' | 106.5° | 110.6° |
| C6' | C1' | N1 | 104.6° | 110.5° |
| C1' | C6' | H6' | 110.4° | 110.7° |
| C1' | C6' | H6'' | 110.9° | 110.8° |
| C6' | C1' | H1' | 119.0° | 110.5° |
| C1' | N1 | C2 | 124.0° | 126.7° |
| C1' | N1 | C5 | 126.3° | 126.7° |
| N1 | C1' | H1' | 106.0° | 110.5° |
| C2 | N1 | C5 | 109.6° | 106.6° |
| N1 | C2 | O2 | 126.1° | 123.8° |
| N1 | C2 | N3 | 112.8° | 112.5° |
| N1 | C5 | C4 | 101.4° | 103.6° |
| N1 | C5 | C6 | 110.7° | 110.6° |
| N1 | C5 | O6 | 109.2° | 110.6° |
| O2 | C2 | N3 | 121.1° | 123.7° |
| C2 | N3 | C4 | 103.1° | 111.7° |
| C2 | N3 | H3 | 128.5° | 124.2° |
| N3 | C4 | O4 | 128.4° | 127.2° |
| N3 | C4 | C5 | 113.2° | 105.6° |
| C4 | N3 | H3 | 128.5° | 124.1° |
| O4 | C4 | C5 | 118.4° | 127.2° |
| C4 | C5 | C6 | 111.1° | 110.5° |
| C4 | C5 | O6 | 109.8° | 110.6° |
| C6 | C5 | O6 | 113.9° | 110.7° |
| C5 | C6 | H61C | 109.5° | 109.5° |
| C5 | C6 | H62C | 109.5° | 109.5° |
| C5 | C6 | H63C | 109.4° | 109.4° |
| C5 | O6 | HO6 | 109.5° | 114.0° |
| H5' | C5' | H5'' | 110.2° | 109.4° |
| H6' | C6' | H6'' | 107.4° | 110.8° |
| H2' | C2' | H2'' | 103.4° | 110.1° |
| H61C | C6 | H62C | 109.5° | 109.4° |
| H61C | C6 | H63C | 109.5° | 109.5° |
| H62C | C6 | H63C | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 124.8° | 120.0° |
| OP1 | P | OP2 | OP3 | 122.7° | 120.0° |
| OP1 | P | O5' | OP3 | 112.7° | 120.1° |
| OP1 | P | O5' | C5' | 55.4° | 55.1° |
| OP1 | P | OP2 | H2P | 78.5° | 60.0° |
| OP1 | P | OP3 | H3P | 92.0° | 179.9° |
| OP2 | P | O5' | OP3 | 117.3° | 120.0° |
| OP2 | P | O5' | C5' | 174.7° | 175.0° |
| OP2 | P | OP3 | H3P | 37.7° | 60.0° |
| P | O5' | C5' | C4' | 171.9° | 180.0° |
| O5' | P | OP2 | H2P | 46.2° | 180.0° |
| O5' | P | OP3 | H3P | 152.6° | 60.0° |
| P | O5' | C5' | H5' | 51.9° | 60.0° |
| P | O5' | C5' | H5'' | 68.5° | 59.9° |
| OP3 | P | O5' | C5' | 57.3° | 65.0° |
| OP3 | P | OP2 | H2P | 158.8° | 60.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 119.6° | 120.0° |
| O5' | C5' | C4' | C3' | 60.1° | 66.4° |
| O5' | C5' | C4' | C6' | 175.1° | 178.8° |
| O5' | C5' | H5' | H5'' | 119.7° | 120.0° |
| O5' | C5' | C4' | H4' | 61.3° | 56.1° |
| C5' | C4' | C3' | C6' | 119.4° | 118.7° |
| C5' | C4' | C3' | H4' | 117.2° | 122.5° |
| C5' | C4' | C6' | H4' | 117.1° | 122.6° |
| C5' | C4' | C3' | O3' | 162.6° | 98.4° |
| C5' | C4' | C3' | C2' | 79.7° | 142.3° |
| C5' | C4' | C6' | C1' | 104.8° | 156.6° |
| C4' | C5' | H5' | H5'' | 119.6° | 120.0° |
| C5' | C4' | C3' | H3' | 42.9° | 23.0° |
| C5' | C4' | C6' | H6' | 135.2° | 85.1° |
| C5' | C4' | C6' | H6'' | 16.3° | 38.3° |
| C3' | C4' | C6' | H4' | 121.1° | 118.7° |
| C4' | C3' | O3' | C2' | 112.7° | 117.2° |
| C4' | C3' | O3' | H3' | 124.1° | 121.3° |
| C4' | C3' | C2' | H3' | 123.6° | 119.3° |
| C4' | C3' | C2' | C1' | 47.5° | 0.0° |
| C3' | C4' | C6' | C1' | 17.0° | 37.9° |
| C3' | C4' | C5' | H5' | 179.9° | 173.5° |
| C3' | C4' | C5' | H5'' | 59.5° | 53.6° |
| C3' | C4' | C6' | H6' | 103.0° | 156.2° |
| C3' | C4' | C6' | H6'' | 138.1° | 80.4° |
| C4' | C3' | O3' | HA | 94.8° | 180.0° |
| C4' | C3' | C2' | H2' | 72.5° | 119.3° |
| C4' | C3' | C2' | H2'' | 170.3° | 119.3° |
| C6' | C4' | C3' | O3' | 78.0° | 142.9° |
| C6' | C4' | C3' | C2' | 39.7° | 23.6° |
| C4' | C6' | C1' | C2' | 11.8° | 38.0° |
| C4' | C6' | C1' | H6' | 120.0° | 118.3° |
| C4' | C6' | C1' | H6'' | 121.1° | 118.3° |
| C4' | C6' | C1' | N1 | 135.6° | 156.6° |
| C6' | C4' | C5' | H5' | 64.9° | 58.7° |
| C6' | C4' | C5' | H5'' | 55.5° | 61.2° |
| C6' | C4' | C3' | H3' | 162.3° | 95.7° |
| C4' | C6' | H6' | H6'' | 121.1° | 123.4° |
| C4' | C6' | C1' | H1' | 106.4° | 80.8° |
| O3' | C3' | C2' | H3' | 119.9° | 121.4° |
| O3' | C3' | C2' | C1' | 69.0° | 119.2° |
| O3' | C3' | C4' | H4' | 45.4° | 24.1° |
| O3' | C3' | C2' | H2' | 171.0° | 121.4° |
| O3' | C3' | C2' | H2'' | 53.9° | 0.0° |
| C3' | C2' | C1' | H2' | 120.0° | 119.3° |
| C3' | C2' | C1' | H2'' | 122.9° | 119.3° |
| C3' | C2' | C1' | C6' | 35.8° | 23.7° |
| C3' | C2' | C1' | N1 | 150.7° | 142.3° |
| C2' | C3' | C4' | H4' | 163.1° | 95.2° |
| C2' | C3' | O3' | HA | 17.9° | 62.9° |
| C3' | C2' | H2' | H2'' | 123.3° | 121.4° |
| C3' | C2' | C1' | H1' | 90.8° | 95.0° |
| C2' | C1' | C6' | N1 | 123.8° | 118.7° |
| C2' | C1' | C6' | H1' | 118.2° | 118.7° |
| C2' | C1' | N1 | H1' | 118.8° | 122.7° |
| C2' | C1' | N1 | C2 | 49.0° | 58.5° |
| C2' | C1' | N1 | C5 | 135.6° | 121.2° |
| C1' | C2' | C3' | H3' | 171.1° | 119.3° |
| C2' | C1' | C6' | H6' | 131.8° | 156.3° |
| C2' | C1' | C6' | H6'' | 109.2° | 80.4° |
| C1' | C2' | H2' | H2'' | 123.3° | 121.4° |
| C6' | C1' | N1 | H1' | 126.5° | 122.6° |
| C6' | C1' | N1 | C2 | 65.6° | 56.2° |
| C6' | C1' | N1 | C5 | 109.8° | 124.0° |
| C1' | C6' | C4' | H4' | 138.1° | 80.8° |
| C1' | C6' | H6' | H6'' | 121.1° | 123.4° |
| C6' | C1' | C2' | H2' | 84.2° | 95.7° |
| C6' | C1' | C2' | H2'' | 158.6° | 142.9° |
| C1' | N1 | C2 | C5 | 176.1° | 179.8° |
| C1' | N1 | C2 | O2 | 3.6° | 0.0° |
| C1' | N1 | C2 | N3 | 177.2° | 180.0° |
| C1' | N1 | C5 | C4 | 176.5° | 179.9° |
| C1' | N1 | C5 | C6 | 58.5° | 61.5° |
| C1' | N1 | C5 | O6 | 67.7° | 61.5° |
| N1 | C1' | C6' | H6' | 104.4° | 85.1° |
| N1 | C1' | C6' | H6'' | 14.5° | 38.3° |
| N1 | C1' | C2' | H2' | 30.7° | 23.0° |
| N1 | C1' | C2' | H2'' | 86.4° | 98.4° |
| N1 | C2 | O2 | N3 | 179.2° | 180.0° |
| N1 | C2 | N3 | C4 | 1.1° | 0.0° |
| C2 | N1 | C5 | C4 | 0.5° | 0.3° |
| C2 | N1 | C5 | C6 | 117.5° | 118.7° |
| C2 | N1 | C5 | O6 | 116.4° | 118.3° |
| C2 | N1 | C1' | H1' | 167.9° | 178.8° |
| N1 | C2 | N3 | H3 | 178.9° | 180.0° |
| C5 | N1 | C2 | O2 | 179.7° | 179.8° |
| C5 | N1 | C2 | N3 | 1.1° | 0.2° |
| N1 | C5 | C4 | N3 | 0.2° | 0.3° |
| N1 | C5 | C4 | O4 | 178.5° | 179.9° |
| N1 | C5 | C4 | C6 | 117.7° | 118.5° |
| N1 | C5 | C4 | O6 | 115.4° | 118.5° |
| N1 | C5 | C6 | O6 | 123.5° | 122.9° |
| C5 | N1 | C1' | H1' | 16.7° | 1.5° |
| N1 | C5 | C6 | H61C | 98.6° | 60.0° |
| N1 | C5 | C6 | H62C | 141.4° | 180.0° |
| N1 | C5 | C6 | H63C | 21.4° | 60.0° |
| N1 | C5 | O6 | HO6 | 82.2° | 180.0° |
| O2 | C2 | N3 | C4 | 179.6° | 180.0° |
| O2 | C2 | N3 | H3 | 0.4° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 178.9° | 180.0° |
| C2 | N3 | C4 | C5 | 0.8° | 0.2° |
| N3 | C4 | O4 | C5 | 178.0° | 179.7° |
| N3 | C4 | C5 | C6 | 117.9° | 118.8° |
| N3 | C4 | C5 | O6 | 115.2° | 118.2° |
| O4 | C4 | C5 | C6 | 63.8° | 61.4° |
| O4 | C4 | C5 | O6 | 63.1° | 61.5° |
| O4 | C4 | N3 | H3 | 1.1° | 0.1° |
| C4 | C5 | C6 | O6 | 124.7° | 122.9° |
| C5 | C4 | N3 | H3 | 179.2° | 179.8° |
| C4 | C5 | C6 | H61C | 13.2° | 54.1° |
| C4 | C5 | C6 | H62C | 106.8° | 65.9° |
| C4 | C5 | C6 | H63C | 133.2° | 174.2° |
| C4 | C5 | O6 | HO6 | 167.5° | 65.8° |
| C5 | C6 | H61C | H62C | 120.0° | 120.0° |
| C5 | C6 | H61C | H63C | 120.0° | 120.0° |
| C5 | C6 | H62C | H63C | 120.0° | 120.0° |
| C6 | C5 | O6 | HO6 | 42.2° | 57.0° |
| O6 | C5 | C6 | H61C | 137.9° | 177.1° |
| O6 | C5 | C6 | H62C | 17.9° | 57.1° |
| O6 | C5 | C6 | H63C | 102.1° | 62.9° |
| H5' | C5' | C4' | H4' | 58.7° | 64.0° |
| H5'' | C5' | C4' | H4' | 179.1° | 176.1° |
| H4' | C4' | C3' | H3' | 74.3° | 145.4° |
| H4' | C4' | C6' | H6' | 18.1° | 37.5° |
| H4' | C4' | C6' | H6'' | 100.8° | 160.9° |
| H3' | C3' | O3' | HA | 141.1° | 58.6° |
| H3' | C3' | C2' | H2' | 51.1° | 0.0° |
| H3' | C3' | C2' | H2'' | 66.0° | 121.4° |
| H6' | C6' | C1' | H1' | 13.6° | 37.5° |
| H6'' | C6' | C1' | H1' | 132.5° | 160.9° |
| H2' | C2' | C1' | H1' | 149.2° | 145.7° |
| H2'' | C2' | C1' | H1' | 32.1° | 24.2° |
| H61C | C6 | H62C | H63C | 120.0° | 120.0° |
