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Summary Geometry Related PDB entries

VES

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N5	C4	sing	1.47Å	1.47Å
N5	C1	sing	1.48Å	1.47Å
C4	C3	sing	1.54Å	1.52Å
C3	C2	sing	1.55Å	1.54Å
C2	C1	sing	1.55Å	1.53Å
C4	H41C	sing	1.09Å	1.10Å
C4	H42C	sing	1.09Å	1.10Å
C1	H11C	sing	1.09Å	1.10Å
C1	H12C	sing	1.09Å	1.10Å
C3	H31C	sing	1.09Å	1.10Å
C3	H32C	sing	1.09Å	1.10Å
C2	H21C	sing	1.09Å	1.10Å
C2	H22C	sing	1.09Å	1.10Å
N5	H2	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	N5	C1	115.4°	108.5°
N5	C4	C3	102.8°	107.3°
N5	C4	H41C	111.1°	109.9°
N5	C4	H42C	111.1°	109.9°
C4	N5	H2	108.0°	111.0°
N5	C1	C2	98.7°	104.8°
N5	C1	H11C	112.1°	110.4°
N5	C1	H12C	112.1°	110.4°
C1	N5	H2	108.0°	111.0°
C4	C3	C2	103.1°	103.0°
C3	C4	H41C	111.1°	109.9°
C3	C4	H42C	111.1°	109.9°
C4	C3	H31C	111.0°	110.7°
C4	C3	H32C	111.0°	110.7°
C3	C2	C1	105.3°	101.6°
C2	C3	H31C	111.1°	110.7°
C2	C3	H32C	111.1°	110.7°
C3	C2	H21C	110.5°	111.0°
C3	C2	H22C	110.5°	111.0°
C2	C1	H11C	112.1°	110.4°
C2	C1	H12C	112.1°	110.4°
C1	C2	H21C	110.5°	111.0°
C1	C2	H22C	110.5°	111.0°
H41C	C4	H42C	109.5°	110.0°
H11C	C1	H12C	109.5°	110.4°
H31C	C3	H32C	109.5°	110.8°
H21C	C2	H22C	109.5°	110.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4	N5	C1	H2	120.9°	122.2°
N5	C4	C3	H41C	118.9°	119.4°
N5	C4	C3	H42C	118.9°	119.4°
N5	C4	C3	C2	24.8°	22.3°
C4	N5	C1	C2	20.0°	24.1°
N5	C4	H41C	H42C	123.1°	121.0°
C4	N5	C1	H11C	98.2°	94.8°
C4	N5	C1	H12C	138.2°	142.9°
N5	C4	C3	H31C	143.8°	140.7°
N5	C4	C3	H32C	94.1°	96.1°
C1	N5	C4	C3	3.0°	1.0°
N5	C1	C2	C3	34.8°	37.1°
N5	C1	C2	H11C	118.2°	118.9°
N5	C1	C2	H12C	118.2°	118.8°
C1	N5	C4	H41C	115.9°	120.4°
C1	N5	C4	H42C	122.0°	118.4°
N5	C1	H11C	H12C	125.0°	122.3°
N5	C1	C2	H21C	84.6°	81.0°
N5	C1	C2	H22C	154.1°	155.2°
C4	C3	C2	H31C	119.0°	118.4°
C4	C3	C2	H32C	119.0°	118.4°
C4	C3	C2	C1	38.5°	35.6°
C3	C4	H41C	H42C	123.1°	121.1°
C4	C3	H31C	H32C	123.0°	123.2°
C4	C3	C2	H21C	80.8°	82.4°
C4	C3	C2	H22C	157.9°	153.7°
C3	C4	N5	H2	117.8°	123.2°
C3	C2	C1	H21C	119.3°	118.1°
C3	C2	C1	H22C	119.3°	118.2°
C2	C3	C4	H41C	94.1°	97.2°
C2	C3	C4	H42C	143.7°	141.7°
C3	C2	C1	H11C	83.5°	81.8°
C3	C2	C1	H12C	153.0°	155.9°
C2	C3	H31C	H32C	123.0°	123.1°
C3	C2	H21C	H22C	121.9°	123.9°
C2	C1	H11C	H12C	125.0°	122.3°
C1	C2	C3	H31C	157.5°	154.0°
C1	C2	C3	H32C	80.4°	82.8°
C1	C2	H21C	H22C	121.9°	123.8°
C2	C1	N5	H2	140.9°	146.3°
H41C	C4	C3	H31C	24.9°	21.2°
H41C	C4	C3	H32C	147.0°	144.5°
H41C	C4	N5	H2	123.3°	117.4°
H42C	C4	C3	H31C	97.3°	99.9°
H42C	C4	C3	H32C	24.8°	23.3°
H42C	C4	N5	H2	1.1°	3.8°
H11C	C1	C2	H21C	157.2°	160.1°
H11C	C1	C2	H22C	35.9°	36.3°
H11C	C1	N5	H2	22.7°	27.4°
H12C	C1	C2	H21C	33.7°	37.8°
H12C	C1	C2	H22C	87.7°	86.0°
H12C	C1	N5	H2	100.9°	94.9°
H31C	C3	C2	H21C	38.2°	36.0°
H31C	C3	C2	H22C	83.2°	87.8°
H32C	C3	C2	H21C	160.2°	159.2°
H32C	C3	C2	H22C	38.9°	35.4°

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