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VDA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C3sing1.43Å1.43Å
C1C2sing1.53Å1.62Å
C1C10sing1.53Å1.58Å
C1O1sing1.43Å1.42Å
C2C3sing1.53Å1.68Å
C2O4sing1.43Å1.42Å
C3C4sing1.53Å1.64Å
C4C5sing1.51Å1.56Å
C5C6doub1.33Å1.35Å
C5C10sing1.51Å1.60Å
C6C7sing1.47Å1.49Å
C7C8doub1.33Å1.25Å
C8C9sing1.52Å1.69Å
C8C14sing1.50Å1.56Å
C9C11sing1.53Å1.60Å
C11C12sing1.54Å1.68Å
C12C13sing1.50Å1.69Å
C13C14sing1.55Å1.61Å
C13C17sing1.48Å1.57Å
C13C18sing1.53Å1.69Å
C14C15sing1.53Å1.69Å
C15C16sing1.53Å1.55Å
C16C17doub1.32Å1.57Å
C17C20sing1.51Å1.68Å
C20C21sing1.53Å1.61Å
C20S22sing1.81Å1.68Å
S22C23sing1.81Å1.52Å
C23C25sing1.53Å1.55Å
C25O3sing1.43Å1.55Å
C25C26sing1.53Å1.35Å
C25C27sing1.53Å1.62Å
C26C29sing1.53Å1.69Å
C27C28sing1.53Å1.63Å
O4C30sing1.43Å1.35Å
C30C31sing1.53Å1.69Å
C31O5sing1.43Å1.43Å
O2HO2sing0.97Å0.95Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C4H4sing1.09Å1.10Å
C4H4Asing1.09Å1.10Å
C6H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C16H16sing1.08Å1.08Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
C18H18Bsing1.09Å1.10Å
C20H20sing1.09Å1.10Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C21H21Bsing1.09Å1.10Å
C23H23sing1.09Å1.10Å
C23H23Asing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C27H27sing1.09Å1.10Å
C27H27Asing1.09Å1.10Å
O1HO1sing0.97Å0.95Å
C30H30sing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
O5HO5sing0.97Å0.95Å
C29H29sing1.09Å1.10Å
C29H29Asing1.09Å1.10Å
C29H29Bsing1.09Å1.10Å
C28H28sing1.09Å1.10Å
C28H28Asing1.09Å1.10Å
C28H28Bsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C3C2108.0°109.5°
O2C3C4108.0°109.5°
C3O2HO2109.5°114.0°
O2C3H3111.0°109.5°
C2C1C10108.1°109.4°
C2C1O1112.1°109.5°
C1C2C3109.1°109.8°
C1C2O4113.7°109.4°
C2C1H1108.8°109.4°
C1C2H2106.8°109.4°
C10C1O1110.1°109.5°
C1C10C5117.4°108.6°
C10C1H1110.9°109.5°
C1C10H10106.9°109.6°
C1C10H10A105.0°109.6°
O1C1H1106.8°109.5°
C1O1HO1109.5°114.0°
C3C2O4109.4°109.4°
C2C3C4108.3°109.4°
C3C2H2111.3°109.4°
C2C3H3110.7°109.5°
C2O4C30107.3°114.0°
O4C2H2106.5°109.3°
C3C4C5116.7°108.5°
C4C3H3110.7°109.5°
C3C4H4107.1°109.6°
C3C4H4A105.5°109.6°
C4C5C6122.5°120.8°
C4C5C10114.2°118.3°
C5C4H4107.1°109.6°
C5C4H4A105.5°109.6°
C6C5C10118.9°120.9°
C5C6C7130.2°120.0°
C5C6H6114.9°120.0°
C5C10H10106.9°109.7°
C5C10H10A105.1°109.6°
C6C7C8124.6°120.0°
C7C6H6114.9°120.0°
C6C7H7117.7°120.0°
C7C8C9125.7°122.9°
C7C8C14125.0°122.8°
C8C7H7117.7°120.0°
C9C8C14109.2°114.3°
C8C9C11115.2°111.0°
C8C9H9107.6°109.1°
C8C9H9A106.3°109.1°
C8C14C13112.2°104.6°
C8C14C15122.5°117.4°
C8C14H1496.1°111.5°
C9C11C12111.7°112.1°
C11C9H9107.6°109.2°
C11C9H9A106.3°109.2°
C9C11H11108.8°108.9°
C9C11H11A108.3°109.0°
C11C12C13115.3°107.4°
C12C11H11108.7°108.9°
C12C11H11A108.3°109.0°
C11C12H12107.6°109.9°
C11C12H12A106.2°109.9°
C12C13C14105.3°108.5°
C12C13C17116.4°122.9°
C12C13C18103.8°107.2°
C13C12H12107.6°109.9°
C13C12H12A106.2°109.9°
C14C13C1798.0°104.3°
C14C13C18116.7°106.3°
C13C14C15105.4°98.0°
C13C14H14116.5°111.9°
C17C13C18116.6°106.6°
C13C17C16106.7°108.7°
C13C17C20114.8°125.7°
C13C18H18109.5°109.5°
C13C18H18A109.5°109.5°
C13C18H18B109.5°109.5°
C14C15C16102.8°102.5°
C15C14H14104.3°112.4°
C14C15H15111.7°110.8°
C14C15H15A113.1°110.7°
C15C16C17107.1°110.4°
C16C15H15111.8°110.8°
C16C15H15A113.2°110.8°
C15C16H16126.4°124.8°
C16C17C20136.2°125.6°
C17C16H16126.4°124.8°
C17C20C21101.1°109.5°
C17C20S22118.1°109.5°
C17C20H20114.2°109.5°
C21C20S22120.0°109.5°
C21C20H20112.0°109.5°
C20C21H21109.5°109.4°
C20C21H21A109.5°109.5°
C20C21H21B109.5°109.4°
C20S22C23111.0°103.0°
S22C20H2092.0°109.5°
S22C23C25117.5°109.5°
S22C23H23106.9°109.5°
S22C23H23A105.0°109.4°
C23C25O392.8°109.5°
C23C25C26129.5°109.5°
C23C25C2792.9°109.5°
C25C23H23106.9°109.5°
C25C23H23A105.0°109.5°
O3C25C26119.4°109.4°
O3C25C2792.5°109.5°
C25O3HO3109.5°114.0°
C26C25C27120.7°109.5°
C25C26C29111.8°109.5°
C25C26H26108.7°109.4°
C25C26H26A108.2°109.5°
C25C27C28119.6°109.5°
C25C27H27106.3°109.5°
C25C27H27A103.9°109.5°
C29C26H26108.7°109.5°
C29C26H26A108.2°109.5°
C26C29H29109.5°109.4°
C26C29H29A109.5°109.5°
C26C29H29B109.5°109.4°
C28C27H27106.2°109.5°
C28C27H27A103.9°109.5°
C27C28H28109.5°109.4°
C27C28H28A109.5°109.4°
C27C28H28B109.5°109.5°
O4C30C31100.2°109.4°
O4C30H30112.7°109.5°
O4C30H30A114.6°109.5°
C30C31O5103.3°109.5°
C31C30H30112.7°109.4°
C31C30H30A114.6°109.5°
C30C31H31111.6°109.4°
C30C31H31A112.9°109.5°
O5C31H31111.6°109.5°
O5C31H31A112.9°109.5°
C31O5HO5109.5°113.9°
H4C4H4A115.3°109.8°
H9C9H9A114.0°109.1°
H10C10H10A115.9°109.8°
H11C11H11A111.1°108.9°
H12C12H12A114.2°109.9°
H15C15H15A104.5°110.9°
H18C18H18A109.4°109.4°
H18C18H18B109.5°109.4°
H18AC18H18B109.5°109.5°
H21C21H21A109.4°109.5°
H21C21H21B109.5°109.4°
H21AC21H21B109.5°109.5°
H23C23H23A116.0°109.5°
H26C26H26A111.3°109.5°
H27C27H27A117.8°109.4°
H30C30H30A102.6°109.5°
H31C31H31A104.8°109.5°
H29C29H29A109.5°109.5°
H29C29H29B109.4°109.5°
H29AC29H29B109.5°109.5°
H28C28H28A109.5°109.5°
H28C28H28B109.4°109.5°
H28AC28H28B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C3C2C156.9°56.4°
O2C3C2C4116.8°120.0°
O2C3C2H3121.7°120.0°
O2C3C2O468.0°63.7°
O2C3C4H3121.7°120.0°
O2C3C4C568.6°65.4°
O2C3C2H2174.6°176.5°
O2C3C4H451.4°54.3°
O2C3C4H4A174.7°174.9°
C2C1C10O1122.8°120.0°
C2C1C10H1119.3°119.9°
C2C1O1H1119.1°120.0°
C1C2C3O4124.9°120.1°
C1C2C3H2117.6°120.1°
C1C2O4H2117.4°119.8°
C1C2C3C459.8°63.6°
C2C1C10C553.7°54.6°
C1C2O4C30137.0°150.0°
C1C2C3H3178.6°176.4°
C2C1C10H1066.3°65.2°
C2C1C10H10A170.0°174.3°
C2C1O1HO129.4°180.0°
C10C1O1H1120.5°120.0°
C10C1C2C362.5°63.6°
C10C1C2O4175.2°176.3°
C1C10C5C441.4°51.4°
C1C10C5C6161.8°128.7°
C1C10C5H10120.0°119.7°
C1C10C5H10A116.3°119.7°
C10C1C2H258.0°56.6°
C1C10H10H10A116.7°120.4°
C10C1O1HO1149.8°60.0°
O1C1C2C3176.0°176.4°
O1C1C2O453.6°56.2°
O1C1C10C5176.5°174.6°
O1C1C2H263.5°63.5°
O1C1C10H1056.5°54.9°
O1C1C10H10A67.2°65.7°
C3C2O4H2120.4°119.8°
C2C3C4H3121.6°120.0°
C2C3C4C548.1°54.6°
C3C2O4C30100.8°89.6°
C2C3O2HO255.5°180.0°
C3C2C1H158.1°56.4°
C2C3C4H4168.1°174.3°
C2C3C4H4A68.5°65.1°
O4C2C3C4175.3°176.3°
C2O4C30C31179.4°180.0°
O4C2C1H164.3°63.8°
O4C2C3H353.7°56.3°
C2O4C30H3059.4°60.1°
C2O4C30H30A57.4°60.0°
C3C4C5H4120.0°119.7°
C3C4C5H4A116.7°119.7°
C3C4C5C6165.8°128.7°
C3C4C5C1038.3°51.4°
C4C3O2HO2172.4°60.0°
C4C3C2H257.8°56.5°
C3C4H4H4A117.0°120.5°
C4C5C6C10154.8°180.0°
C4C5C6C7158.2°174.0°
C5C4C3H3169.7°174.6°
C5C4H4H4A117.0°120.5°
C4C5C6H621.9°6.0°
C4C5C10H1078.6°68.4°
C4C5C10H10A157.7°171.1°
C5C6C7H6180.0°179.9°
C5C6C7C8176.6°174.9°
C6C5C4H445.8°9.0°
C6C5C4H4A77.5°111.6°
C5C6C7H73.3°5.1°
C6C5C10H1078.2°111.6°
C6C5C10H10A45.5°9.0°
C10C5C6C747.0°6.0°
C5C10C1H165.5°65.3°
C10C5C4H4158.3°171.1°
C10C5C4H4A78.3°68.3°
C10C5C6H6133.0°174.0°
C5C10H10H10A116.7°120.5°
C6C7C8H7180.0°179.9°
C6C7C8C931.9°0.0°
C6C7C8C14153.8°179.7°
C7C8C9C14175.1°179.7°
C7C8C9C11133.1°128.5°
C7C8C14C13119.5°120.2°
C7C8C14C157.5°12.9°
C8C7C6H63.4°5.2°
C7C8C9H9106.9°111.1°
C7C8C9H9A15.6°8.0°
C7C8C14H14118.7°118.8°
C8C9C11H9120.0°120.4°
C8C9C11H9A117.4°120.4°
C8C9C11C1240.9°48.0°
C9C8C14C1365.4°59.5°
C9C8C14C15167.6°166.8°
C9C8C7H7148.1°179.9°
C8C9H9H9A117.6°119.2°
C8C9C11H11160.9°168.6°
C8C9C11H11A78.2°72.8°
C9C8C14H1456.4°61.5°
C14C8C9C1151.9°51.3°
C8C14C13C1265.5°68.0°
C8C14C13C15135.6°121.2°
C8C14C13H14109.3°120.8°
C8C14C13C17174.3°159.4°
C8C14C13C1849.0°47.0°
C8C14C15H14107.0°131.3°
C8C14C15C16150.1°146.8°
C14C8C7H726.2°0.3°
C14C8C9H968.1°69.1°
C14C8C9H9A169.3°171.7°
C8C14C15H1530.1°28.6°
C8C14C15H15A87.5°95.0°
C9C11C12H11120.0°120.6°
C9C11C12H11A119.1°120.7°
C9C11C12C1343.3°57.1°
C11C9H9H9A117.7°119.3°
C9C11H11H11A119.1°118.7°
C9C11C12H1276.7°62.3°
C9C11C12H12A160.7°176.6°
C11C12C13H12120.0°119.5°
C11C12C13H12A117.4°119.5°
C11C12C13C1453.3°67.7°
C11C12C13C17160.6°170.5°
C11C12C13C1869.8°46.7°
C12C11C9H979.1°72.4°
C12C11C9H9A158.3°168.4°
C12C11H11H11A119.1°118.8°
C11C12H12H12A117.6°121.0°
C12C13C14C17120.3°132.6°
C12C13C14C18114.4°115.0°
C12C13C17C18123.2°124.1°
C12C13C14C15158.9°170.8°
C12C13C17C16155.9°150.4°
C12C13C17C2038.4°30.2°
C13C12C11H11163.3°177.7°
C13C12C11H11A75.8°63.6°
C13C12H12H12A117.6°121.0°
C12C13C14H1443.9°52.7°
C12C13C18H1849.5°60.7°
C12C13C18H18A70.5°179.3°
C12C13C18H18B169.5°59.3°
C14C13C17C18125.3°112.2°
C13C14C15H14123.2°117.7°
C13C14C15C1620.2°35.7°
C14C13C17C1644.4°26.7°
C14C13C17C20149.9°153.9°
C14C13C12H1266.7°51.8°
C14C13C12H12A170.7°172.8°
C13C14C15H1599.8°82.5°
C13C14C15H15A142.6°154.0°
C14C13C18H18164.7°55.3°
C14C13C18H18A44.7°64.7°
C14C13C18H18B75.3°175.2°
C17C13C14C1538.6°38.2°
C13C17C16C1533.7°2.4°
C13C17C16C20161.1°179.4°
C13C17C20C21170.4°69.9°
C13C17C20S2256.5°170.1°
C17C13C12H1240.6°70.0°
C17C13C12H12A82.0°51.0°
C17C13C14H1476.4°79.8°
C13C17C16H16146.3°178.0°
C17C13C18H1880.0°166.1°
C17C13C18H18A160.0°46.1°
C17C13C18H18B40.0°74.0°
C13C17C20H2049.9°50.1°
C18C13C14C1586.6°74.2°
C18C13C17C1680.9°85.5°
C18C13C17C2084.8°93.9°
C18C13C12H12170.2°166.2°
C18C13C12H12A47.6°72.7°
C18C13C14H14158.3°167.8°
C13C18H18H18A120.0°120.0°
C13C18H18H18B120.0°120.0°
C13C18H18AH18B120.0°120.0°
C14C15C16H15120.0°118.3°
C14C15C16H15A122.4°118.2°
C14C15C16C177.3°22.8°
C14C15H15H15A122.7°123.4°
C14C15C16H16172.6°156.7°
C15C16C17H16180.0°179.5°
C15C16C17C20165.2°178.2°
C16C15C14H14103.0°81.9°
C16C15H15H15A122.7°123.5°
C16C17C20C2129.6°110.8°
C16C17C20S22103.5°9.3°
C17C16C15H15127.3°95.4°
C17C16C15H15A115.1°141.0°
C16C17C20H20150.0°129.3°
C17C20C21S22131.9°120.0°
C17C20C21H20122.0°120.0°
C17C20S22H20119.0°120.0°
C17C20S22C2365.0°175.0°
C20C17C16H1614.9°1.4°
C17C20C21H2141.9°60.0°
C17C20C21H21A78.0°60.0°
C17C20C21H21B161.9°180.0°
C21C20S22H20117.0°120.0°
C21C20S22C2359.1°65.0°
C20C21H21H21A120.0°120.0°
C20C21H21H21B120.0°119.9°
C20C21H21AH21B120.0°120.0°
C20S22C23C25135.6°180.0°
S22C20C21H2190.0°60.0°
S22C20C21H21A150.1°180.0°
S22C20C21H21B30.0°59.9°
C20S22C23H23104.4°60.0°
C20S22C23H23A19.4°60.0°
S22C23C25H23120.0°120.0°
S22C23C25H23A116.3°120.0°
S22C23C25O390.0°65.0°
S22C23C25C2642.6°175.0°
S22C23C25C27177.3°55.0°
C23S22C20H20176.0°55.0°
S22C23H23H23A116.7°120.0°
C23C25O3C26139.3°120.0°
C23C25O3C2793.0°120.0°
C23C25C26C27124.4°120.0°
C23C25C26C2958.1°57.1°
C23C25C27C28171.4°179.9°
C25C23H23H23A116.7°120.0°
C23C25O3HO388.7°60.0°
C23C25C26H26178.1°62.9°
C23C25C26H26A60.9°177.1°
C23C25C27H2768.6°59.9°
C23C25C27H27A56.3°60.0°
O3C25C26C27113.2°120.0°
O3C25C26C29179.5°62.9°
O3C25C27C2878.5°60.1°
O3C25C23H23150.0°55.0°
O3C25C23H23A26.3°175.0°
O3C25C26H2659.5°177.1°
O3C25C26H26A61.5°57.1°
O3C25C27H27161.5°179.9°
O3C25C27H27A36.7°60.0°
C25C26C29H26120.0°119.9°
C25C26C29H26A119.0°120.0°
C26C25C27C2848.2°59.9°
C26C25C23H2377.5°65.0°
C26C25C23H23A158.8°55.0°
C26C25O3HO3132.0°60.0°
C25C26H26H26A119.0°120.0°
C26C25C27H2771.8°60.1°
C26C25C27H27A163.3°180.0°
C25C26C29H29128.8°54.9°
C25C26C29H29A8.9°65.1°
C25C26C29H29B111.2°174.9°
C27C25C26C2966.3°177.1°
C25C27C28H27120.0°120.0°
C25C27C28H27A115.1°120.0°
C27C25C23H2357.3°175.0°
C27C25C23H23A66.4°65.0°
C27C25O3HO34.3°180.0°
C27C25C26H2653.7°57.1°
C27C25C26H26A174.7°62.9°
C25C27H27H27A115.9°120.0°
C25C27C28H28160.5°54.8°
C25C27C28H28A79.5°65.1°
C25C27C28H28B40.5°174.8°
C29C26H26H26A119.1°120.1°
C26C29H29H29A120.0°120.0°
C26C29H29H29B120.0°119.9°
C26C29H29AH29B120.0°120.0°
C28C27H27H27A115.8°120.0°
C27C28H28H28A120.0°119.9°
C27C28H28H28B120.0°120.0°
C27C28H28AH28B120.0°120.0°
O4C30C31H30120.0°120.0°
O4C30C31H30A123.2°120.0°
O4C30C31O591.5°65.0°
C30O4C2H219.6°30.2°
O4C30H30H30A123.7°120.1°
O4C30C31H31148.5°175.0°
O4C30C31H31A30.8°55.0°
C30C31O5H31120.0°120.0°
C30C31O5H31A122.2°120.0°
C31C30H30H30A123.7°120.0°
C30C31H31H31A122.5°120.0°
C30C31O5HO5154.4°180.0°
O5C31C30H3028.6°55.0°
O5C31C30H30A145.4°175.0°
O5C31H31H31A122.5°120.0°
HO2O2C3H366.1°60.0°
H1C1C2H2178.5°176.5°
H1C1C10H10174.5°174.9°
H1C1C10H10A50.8°54.4°
H1C1O1HO189.8°60.0°
H2C2C3H363.7°63.5°
H3C3C4H470.3°65.7°
H3C3C4H4A53.0°54.9°
H6C6C7H7176.7°174.9°
H9C9C11H1140.9°48.2°
H9C9C11H11A161.8°166.9°
H9AC9C11H1181.7°71.0°
H9AC9C11H11A39.2°47.6°
H11C11C12H1243.3°58.3°
H11C11C12H12A79.3°62.8°
H11AC11C12H12164.2°177.0°
H11AC11C12H12A41.6°55.9°
H14C14C15H15137.0°159.8°
H14C14C15H15A19.5°36.3°
H15C15C16H1652.6°85.0°
H15AC15C16H1665.0°38.5°
H18C18H18AH18B120.0°119.9°
H20C20C21H21164.0°180.0°
H20C20C21H21A44.0°60.0°
H20C20C21H21B76.0°60.1°
H21C21H21AH21B120.0°120.0°
H26C26C29H29111.1°174.9°
H26C26C29H29A128.9°54.9°
H26C26C29H29B8.8°65.1°
H26AC26C29H299.8°65.1°
H26AC26C29H29A110.1°174.9°
H26AC26C29H29B129.8°54.9°
H27C27C28H2840.5°174.8°
H27C27C28H28A160.5°54.9°
H27C27C28H28B79.5°65.2°
H27AC27C28H2884.4°65.2°
H27AC27C28H28A35.6°174.9°
H27AC27C28H28B155.6°54.8°
H30C30C31H3191.4°65.0°
H30C30C31H31A150.8°175.0°
H30AC30C31H3125.4°55.0°
H30AC30C31H31A92.4°65.0°
H31C31O5HO534.4°60.1°
H31AC31O5HO583.4°60.0°
H29C29H29AH29B119.9°120.1°
H28C28H28AH28B120.0°120.1°

223532

PDB entries from 2024-08-07

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