Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VD2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3C25sing1.43Å1.40Å
O3HO3sing0.97Å0.95Å
C25C27sing1.53Å1.57Å
C25C26sing1.53Å1.51Å
C25C24sing1.53Å1.49Å
C27H271sing1.09Å1.12Å
C27H272sing1.09Å1.12Å
C27H273sing1.09Å1.11Å
C26H261sing1.09Å1.11Å
C26H262sing1.09Å1.11Å
C26H263sing1.09Å1.12Å
C24C23sing1.53Å1.43Å
C24H241sing1.09Å1.11Å
C24H242sing1.09Å1.12Å
C23C22sing1.53Å1.51Å
C23H231sing1.09Å1.11Å
C23H232sing1.09Å1.11Å
C22C20sing1.53Å1.56Å
C22H221sing1.09Å1.11Å
C22H222sing1.09Å1.12Å
C20C21sing1.53Å1.62Å
C20C17sing1.53Å1.60Å
C20H20sing1.09Å1.11Å
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.11Å
C21H213sing1.09Å1.12Å
C17C16sing1.55Å1.59Å
C17C13sing1.52Å1.54Å
C17H17sing1.09Å1.12Å
C16C15sing1.55Å1.57Å
C16H161sing1.09Å1.12Å
C16H162sing1.09Å1.11Å
C13C18sing1.53Å1.68Å
C13C14sing1.55Å1.62Å
C13C12sing1.51Å1.62Å
C18H181sing1.09Å1.12Å
C18H182sing1.09Å1.12Å
C18H183sing1.09Å1.12Å
C14C15sing1.53Å1.66Å
C14C8sing1.50Å1.52Å
C14H14sing1.09Å1.11Å
C15H151sing1.09Å1.12Å
C15H152sing1.09Å1.12Å
C12C11sing1.54Å1.62Å
C12H121sing1.09Å1.11Å
C12H122sing1.09Å1.12Å
C11C9sing1.53Å1.58Å
C11H111sing1.09Å1.11Å
C11H112sing1.09Å1.11Å
C9C8sing1.52Å1.61Å
C9H91sing1.09Å1.11Å
C9H92sing1.09Å1.11Å
C8C7doub1.33Å1.29Å
C7C6sing1.47Å1.50Å
C7H7sing1.08Å1.10Å
C6C5doub1.33Å1.39Å
C6H6sing1.08Å1.10Å
C5C10sing1.51Å1.54Å
C5C4sing1.51Å1.52Å
C10C1sing1.54Å1.56Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.12Å
C4C3sing1.53Å1.56Å
C4H41sing1.09Å1.11Å
C4H42sing1.09Å1.11Å
C3O2sing1.43Å1.44Å
C3C2sing1.53Å1.60Å
C3H3sing1.09Å1.11Å
O2HO2sing0.97Å0.95Å
C2C28sing1.53Å1.54Å
C2C1sing1.53Å1.55Å
C2H2sing1.09Å1.11Å
C28H281sing1.09Å1.11Å
C28H282sing1.09Å1.12Å
C28H283sing1.09Å1.11Å
C1O1sing1.43Å1.46Å
C1H1sing1.09Å1.12Å
O1HO1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C25O3HO3107.6°106.8°
O3C25C27107.6°109.5°
O3C25C26112.0°109.5°
O3C25C24109.6°109.4°
C27C25C26110.5°109.5°
C27C25C24106.5°109.6°
C25C27H271107.6°109.6°
C25C27H272112.9°109.4°
C25C27H273112.9°109.5°
C26C25C24110.4°109.4°
C25C26H261111.9°109.5°
C25C26H262111.3°109.5°
C25C26H263111.3°109.4°
C25C24C23121.6°109.6°
C25C24H241107.9°109.4°
C25C24H242107.9°109.4°
H271C27H272112.9°109.4°
H271C27H273112.9°109.5°
H272C27H27397.5°109.5°
H261C26H262111.3°109.5°
H261C26H263111.3°109.4°
H262C26H26399.1°109.5°
C23C24H241107.9°109.4°
C23C24H242107.9°109.5°
C24C23C22112.0°109.5°
C24C23H231111.3°109.4°
C24C23H232111.3°109.5°
H241C24H242102.0°109.4°
C22C23H231111.2°109.5°
C22C23H232111.2°109.5°
C23C22C20112.2°109.6°
C23C22H221111.3°109.5°
C23C22H222111.3°109.4°
H231C23H23299.1°109.5°
C20C22H221111.2°109.5°
C20C22H222111.2°109.4°
C22C20C21106.7°109.4°
C22C20C17115.8°109.6°
C22C20H20105.5°109.4°
H221C22H22299.0°109.4°
C21C20C17103.9°109.5°
C21C20H20117.1°109.4°
C20C21H211106.7°109.5°
C20C21H212113.2°109.5°
C20C21H213113.2°109.5°
C17C20H20108.2°109.5°
C20C17C16120.8°110.3°
C20C17C13111.3°110.4°
C20C17H1798.2°110.3°
H211C21H212113.3°109.4°
H211C21H213113.2°109.5°
H212C21H21397.2°109.4°
C16C17C13104.2°105.1°
C16C17H17106.1°110.3°
C17C16C15104.8°106.3°
C17C16H161114.0°110.1°
C17C16H162114.0°110.0°
C13C17H17116.7°110.4°
C17C13C18118.6°109.2°
C17C13C1495.9°103.1°
C17C13C12118.6°119.0°
C15C16H161114.0°110.1°
C15C16H162114.0°110.1°
C16C15C14102.4°102.7°
C16C15H151114.9°110.7°
C16C15H152114.9°110.8°
H161C16H16296.4°110.1°
C18C13C14116.6°107.8°
C18C13C12102.5°109.3°
C13C18H181118.6°109.5°
C13C18H182108.9°109.5°
C13C18H183108.9°109.5°
C14C13C12104.4°107.8°
C13C14C15103.7°101.4°
C13C14C8108.2°106.0°
C13C14H14119.6°110.9°
C13C12C11113.9°108.1°
C13C12H121110.5°109.4°
C13C12H122110.5°109.8°
H181C18H182108.9°109.5°
H181C18H183108.9°109.4°
H182C18H183101.1°109.5°
C15C14C8122.3°116.6°
C15C14H14104.5°110.8°
C14C15H151114.9°110.8°
C14C15H152114.9°110.8°
C8C14H1499.7°110.6°
C14C8C9111.4°115.2°
C14C8C7123.9°122.4°
H151C15H15295.5°110.8°
C11C12H121110.6°109.8°
C11C12H122110.6°109.8°
C12C11C9107.9°111.8°
C12C11H111112.8°109.0°
C12C11H112112.8°109.1°
H121C12H12299.8°109.9°
C9C11H111112.8°109.0°
C9C11H112112.8°109.0°
C11C9C8105.5°110.7°
C11C9H91113.7°109.2°
C11C9H92113.8°109.3°
H111C11H11297.7°109.0°
C8C9H91113.7°109.3°
C8C9H92113.7°109.2°
C9C8C7124.7°122.4°
H91C9H9296.7°109.1°
C8C7C6124.5°120.0°
C8C7H7109.8°120.0°
C6C7H7125.7°120.0°
C7C6C5127.6°120.0°
C7C6H6120.7°120.0°
C5C6H6111.7°120.0°
C6C5C10123.0°120.8°
C6C5C4122.4°120.8°
C10C5C4114.6°118.3°
C5C10C1120.4°108.3°
C5C10H101108.3°110.0°
C5C10H102108.3°109.5°
C5C4C3112.5°108.5°
C5C4H41111.1°109.6°
C5C4H42111.1°109.6°
C1C10H101108.2°109.6°
C1C10H102108.3°109.6°
C10C1C2107.3°109.3°
C10C1O1110.8°109.6°
C10C1H1110.0°109.4°
H101C10H102101.6°109.8°
C3C4H41111.1°109.6°
C3C4H42111.1°109.6°
C4C3O2110.2°109.5°
C4C3C2108.7°109.4°
C4C3H3109.4°109.5°
H41C4H4299.3°109.8°
O2C3C2109.2°109.5°
O2C3H3109.0°109.5°
C3O2HO2110.2°106.8°
C2C3H3110.4°109.4°
C3C2C28125.9°109.5°
C3C2C1109.7°109.8°
C3C2H296.9°109.4°
C28C2C1112.2°109.3°
C28C2H293.3°109.4°
C2C28H281125.9°109.6°
C2C28H282106.4°109.5°
C2C28H283106.4°109.5°
C1C2H2116.9°109.4°
C2C1O1109.6°109.5°
C2C1H1111.3°109.5°
H281C28H282106.4°109.5°
H281C28H283106.5°109.4°
H282C28H283103.2°109.5°
O1C1H1107.8°109.5°
C1O1HO1110.8°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3C25C27C26122.5°120.0°
O3C25C27C24117.5°120.0°
O3C25C26C24122.4°119.9°
O3C25C27H271180.0°60.0°
O3C25C27H27254.7°60.0°
O3C25C27H27354.7°180.0°
O3C25C26H261180.0°180.0°
O3C25C26H26254.8°60.0°
O3C25C26H26354.8°60.1°
O3C25C24C2375.1°60.0°
O3C25C24H24150.1°60.1°
O3C25C24H242159.6°180.0°
HO3O3C25C27180.0°60.0°
HO3O3C25C2658.4°180.0°
HO3O3C25C2464.5°60.1°
C27C25C26C24117.6°120.1°
C25C27H271H272125.2°119.9°
C25C27H271H273125.3°120.1°
C25C27H272H273118.8°119.9°
C27C25C26H26160.0°60.0°
C27C25C26H26265.2°180.0°
C27C25C26H263174.7°59.9°
C27C25C24C23168.7°180.0°
C27C25C24H24166.0°60.0°
C27C25C24H24243.5°59.9°
C26C25C27H27157.5°60.0°
C26C25C27H272177.3°180.0°
C26C25C27H27367.8°60.0°
C25C26H261H262125.2°120.0°
C25C26H261H263125.2°119.9°
C25C26H262H263117.2°120.0°
C26C25C24C2348.6°60.0°
C26C25C24H241173.9°180.0°
C26C25C24H24276.6°60.1°
C24C25C27H27162.5°180.0°
C24C25C27H27262.7°60.0°
C24C25C27H273172.2°59.9°
C24C25C26H26157.6°60.1°
C24C25C26H262177.2°59.9°
C24C25C26H26367.6°180.0°
C25C24C23H241125.3°120.0°
C25C24C23H242125.3°120.0°
C25C24H241H242113.5°119.9°
C25C24C23C22160.6°180.0°
C25C24C23H23174.2°60.0°
C25C24C23H23235.3°59.9°
H271C27H272H273118.8°120.0°
H261C26H262H263117.2°120.0°
C23C24H241H242113.4°120.0°
C24C23C22H231125.3°120.0°
C24C23C22H232125.3°120.0°
C24C23H231H232117.2°119.9°
C24C23C22C20176.7°180.0°
C24C23C22H22158.1°60.0°
C24C23C22H22251.3°60.0°
H241C24C23C2235.3°60.0°
H241C24C23H231160.5°180.0°
H241C24C23H23290.0°60.1°
H242C24C23C2274.2°60.0°
H242C24C23H23151.1°60.0°
H242C24C23H232160.6°180.0°
C22C23H231H232117.1°120.0°
C23C22C20H221125.3°120.1°
C23C22C20H222125.3°120.0°
C23C22H221H222117.1°120.0°
C23C22C20C2184.1°59.9°
C23C22C20C17160.8°180.0°
C23C22C20H2041.2°60.0°
H231C23C22C2051.4°60.0°
H231C23C22H221176.7°179.9°
H231C23C22H22273.9°60.0°
H232C23C22C2058.1°60.0°
H232C23C22H22167.2°60.1°
H232C23C22H222176.6°180.0°
C20C22H221H222117.1°119.9°
C22C20C21C17122.9°120.1°
C22C20C21H20117.9°119.9°
C22C20C17H20118.2°120.0°
C22C20C21H211179.9°60.1°
C22C20C21H21254.7°179.9°
C22C20C21H21354.7°60.0°
C22C20C17C1636.3°62.8°
C22C20C17C1386.4°178.5°
C22C20C17H17150.6°59.3°
H221C22C20C2141.2°180.0°
H221C22C20C1773.9°59.9°
H221C22C20H20166.5°60.1°
H222C22C20C21150.6°60.1°
H222C22C20C1735.5°60.0°
H222C22C20H2084.1°180.0°
C21C20C17H20125.2°120.0°
C20C21H211H212125.3°120.0°
C20C21H211H213125.2°120.1°
C20C21H212H213119.1°120.0°
C21C20C17C1680.4°177.2°
C21C20C17C13156.9°61.5°
C21C20C17H1733.9°60.7°
C17C20C21H21157.0°60.0°
C17C20C21H212177.6°60.0°
C17C20C21H21368.2°180.0°
C20C17C16C13126.0°118.9°
C20C17C16H17110.2°122.1°
C20C17C13H17111.6°122.2°
C20C17C16C15165.8°122.9°
C20C17C16H16168.9°117.9°
C20C17C16H16240.5°3.7°
C20C17C13C1859.8°34.6°
C20C17C13C14175.5°149.0°
C20C17C13C1265.5°91.8°
H20C20C21H21162.2°180.0°
H20C20C21H21263.2°60.0°
H20C20C21H213172.6°59.9°
H20C20C17C16154.4°57.2°
H20C20C17C1331.7°58.5°
H20C20C17H1791.2°179.3°
H211C21H212H213119.1°120.0°
C16C17C13H17116.6°118.9°
C17C16C15H161125.3°119.2°
C17C16C15H162125.3°119.2°
C17C16H161H162119.9°121.5°
C16C17C13C1872.0°84.3°
C16C17C13C1452.7°30.1°
C16C17C13C12162.6°149.3°
C17C16C15C148.0°24.2°
C17C16C15H151117.3°142.5°
C17C16C15H152133.3°94.1°
C13C17C16C1539.8°3.9°
C13C17C16H161165.1°123.2°
C13C17C16H16285.5°115.3°
C17C13C18C14113.8°111.4°
C17C13C18C12132.8°131.7°
C17C13C14C12121.6°126.7°
C17C13C18H181180.0°169.0°
C17C13C18H18254.7°49.0°
C17C13C18H18354.7°71.1°
C17C13C14C1546.7°45.5°
C17C13C14C8177.9°167.7°
C17C13C14H1469.1°72.1°
C17C13C12C11163.0°176.0°
C17C13C12H12171.7°64.4°
C17C13C12H12237.8°56.2°
H17C17C16C1584.0°115.0°
H17C17C16H16141.3°4.2°
H17C17C16H162150.7°125.8°
H17C17C13C18171.4°156.8°
H17C17C13C1463.9°88.8°
H17C17C13C1246.1°30.4°
C15C16H161H162119.8°121.6°
C16C15C14C1323.9°42.3°
C16C15C14H151125.3°118.3°
C16C15C14H152125.3°118.3°
C16C15C14C8146.2°156.8°
C16C15C14H14102.1°75.5°
C16C15H151H152120.7°123.4°
H161C16C15C14133.3°95.0°
H161C16C15H1518.0°23.3°
H161C16C15H152101.4°146.7°
H162C16C15C14117.4°143.3°
H162C16C15H151117.3°98.4°
H162C16C15H1528.0°25.0°
C18C13C14C12112.3°117.9°
C13C18H181H182125.2°120.0°
C13C18H181H183125.3°120.0°
C13C18H182H183114.6°120.0°
C18C13C14C1579.5°69.9°
C18C13C14C851.7°52.3°
C18C13C14H14164.7°172.5°
C18C13C12C1164.2°49.7°
C18C13C12H12161.1°169.3°
C18C13C12H122170.6°70.1°
C14C13C18H18166.2°57.6°
C14C13C18H18259.1°62.4°
C14C13C18H183168.5°177.6°
C13C14C15C8122.3°114.6°
C13C14C15H14126.1°117.7°
C13C14C8H14125.8°120.3°
C13C14C15H151149.2°160.5°
C13C14C15H152101.3°76.0°
C14C13C12C1157.9°67.2°
C14C13C12H121176.9°52.4°
C14C13C12H12267.4°173.0°
C13C14C8C969.1°57.8°
C13C14C8C7109.2°122.2°
C12C13C18H18147.2°59.3°
C12C13C18H182172.4°179.3°
C12C13C18H18378.1°60.7°
C12C13C14C15168.2°172.2°
C12C13C14C860.5°65.6°
C12C13C14H1452.5°54.5°
C13C12C11H121125.2°119.3°
C13C12C11H122125.2°119.8°
C13C12H121H122116.4°120.6°
C13C12C11C959.7°58.9°
C13C12C11H11165.5°179.4°
C13C12C11H112175.1°61.7°
H181C18H182H183114.6°120.0°
C15C14C8H14114.1°127.8°
C14C15H151H152120.8°123.4°
C15C14C8C9170.7°169.7°
C15C14C8C711.0°10.3°
C8C14C15H15188.5°84.9°
C8C14C15H15220.9°38.5°
C14C8C9C1167.2°50.2°
C14C8C9C7178.3°180.0°
C14C8C9H91167.5°70.1°
C14C8C9H9258.1°170.6°
C14C8C7C6179.7°180.0°
C14C8C7H70.3°0.1°
H14C14C15H15123.1°42.8°
H14C14C15H152132.6°166.2°
H14C14C8C956.7°62.6°
H14C14C8C7125.0°117.4°
C11C12H121H122116.5°120.9°
C12C11C9H111125.2°120.6°
C12C11C9H112125.3°120.6°
C12C11H111H112118.8°118.9°
C12C11C9C858.3°48.6°
C12C11C9H91176.5°71.8°
C12C11C9H9267.0°168.9°
H121C12C11C9175.1°60.5°
H121C12C11H11159.7°60.1°
H121C12C11H11249.8°178.9°
H122C12C11C965.5°178.6°
H122C12C11H111169.3°60.9°
H122C12C11H11259.7°58.0°
C9C11H111H112118.7°118.8°
C11C9C8H91125.3°120.3°
C11C9C8H92125.3°120.3°
C11C9H91H92119.7°119.4°
C11C9C8C7111.1°129.8°
H111C11C9C867.0°169.2°
H111C11C9H9158.3°48.8°
H111C11C9H92167.8°70.5°
H112C11C9C8176.5°72.0°
H112C11C9H9151.2°167.6°
H112C11C9H9258.3°48.3°
C8C9H91H92119.6°119.4°
C9C8C7C62.2°0.0°
C9C8C7H7177.8°179.9°
H91C9C8C714.2°109.9°
H92C9C8C7123.6°9.4°
C8C7C6H7180.0°179.9°
C8C7C6C5168.5°175.1°
C8C7C6H611.5°4.9°
C7C6C5H6180.0°180.0°
C7C6C5C103.7°5.6°
C7C6C5C4178.0°174.1°
H7C7C6C511.5°4.8°
H7C7C6H6168.5°175.1°
C6C5C10C4178.4°179.7°
C6C5C10C1144.8°128.7°
C6C5C10H10119.6°111.6°
C6C5C10H10289.9°9.2°
C6C5C4C3140.4°128.7°
C6C5C4H4194.3°9.0°
C6C5C4H4215.2°111.6°
H6C6C5C10176.3°174.4°
H6C6C5C42.0°6.0°
C5C10C1H101125.3°119.9°
C5C10C1H102125.3°119.4°
C5C10H101H102113.9°120.6°
C10C5C4C341.2°51.6°
C10C5C4H4184.1°171.4°
C10C5C4H42166.4°68.1°
C5C10C1C244.7°54.8°
C5C10C1O1164.3°65.2°
C5C10C1H176.6°174.8°
C4C5C10C136.8°51.7°
C4C5C10H101162.1°68.1°
C4C5C10H10288.5°171.2°
C5C4C3H41125.2°119.7°
C5C4C3H42125.2°119.7°
C5C4H41H42117.0°120.4°
C5C4C3O263.4°174.6°
C5C4C3C256.1°54.6°
C5C4C3H3176.8°65.3°
C1C10H101H102114.0°120.5°
C10C1C2C357.7°63.7°
C10C1C2C2887.3°176.2°
C10C1C2O1120.4°120.1°
C10C1C2H1120.4°119.9°
C10C1C2H2166.7°56.4°
C10C1O1H1120.4°120.0°
C10C1O1HO1180.0°60.1°
H101C10C1C2169.9°65.1°
H101C10C1O170.5°174.9°
H101C10C1H148.6°54.8°
H102C10C1C280.7°174.3°
H102C10C1O139.0°54.3°
H102C10C1H1158.1°65.8°
C3C4H41H42117.0°120.5°
C4C3O2C2119.3°120.0°
C4C3O2H3120.0°120.0°
C4C3C2H3120.0°120.0°
C4C3O2HO2180.0°60.0°
C4C3C2C2872.6°176.4°
C4C3C2C166.4°63.6°
C4C3C2H2171.8°56.5°
H41C4C3O2171.3°65.6°
H41C4C3C269.1°174.3°
H41C4C3H351.6°54.4°
H42C4C3O261.8°54.9°
H42C4C3C2178.6°65.1°
H42C4C3H357.9°174.9°
O2C3C2H3119.8°120.0°
O2C3C2C28167.2°56.3°
O2C3C2C153.8°176.4°
O2C3C2H268.0°63.5°
C2C3O2HO260.6°180.0°
C3C2C28C1138.2°120.4°
C3C2C28H2101.0°119.9°
C3C2C1H2109.0°120.1°
C3C2C28H281179.9°180.0°
C3C2C28H28254.8°60.0°
C3C2C28H28354.7°60.0°
C3C2C1O1178.1°56.4°
C3C2C1H162.7°176.5°
H3C3O2HO260.0°60.1°
H3C3C2C2847.4°63.6°
H3C3C2C1173.6°56.4°
H3C3C2H251.7°176.5°
C28C2C1H2106.1°119.8°
C2C28H281H282125.2°120.1°
C2C28H281H283125.3°120.0°
C2C28H282H283111.8°120.0°
C28C2C1O133.2°63.7°
C28C2C1H1152.3°56.3°
C1C2C28H28141.8°59.7°
C1C2C28H28283.4°60.4°
C1C2C28H283167.1°179.6°
C2C1O1H1121.3°120.1°
C2C1O1HO161.7°180.0°
H2C2C28H28179.1°60.1°
H2C2C28H282155.8°179.9°
H2C2C28H28346.2°59.9°
H2C2C1O172.9°176.5°
H2C2C1H146.3°63.5°
H281C28H282H283111.9°119.9°
H1C1O1HO159.6°59.9°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon