VC9
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.25Å | |
| C2 | N3 | sing | 1.33Å | 1.31Å | |
| C2 | N1 | sing | 1.35Å | 1.32Å | |
| C2' | C1' | sing | 1.54Å | 1.59Å | |
| C2' | C3' | sing | 1.55Å | 1.31Å | |
| N3 | C4 | doub | 1.33Å | 1.33Å | |
| C1' | N1 | sing | 1.46Å | 1.35Å | |
| C1' | O4' | sing | 1.44Å | 1.54Å | |
| N1 | C6 | sing | 1.36Å | 1.31Å | |
| O3' | C3' | sing | 1.43Å | 1.49Å | |
| C3' | C4' | sing | 1.54Å | 1.63Å | |
| C4 | N4 | sing | 1.38Å | 1.48Å | |
| C4 | C5 | sing | 1.41Å | 1.36Å | |
| O4' | C4' | sing | 1.44Å | 1.30Å | |
| C4' | C5' | sing | 1.53Å | 1.56Å | |
| C6 | C5 | doub | 1.35Å | 1.41Å | |
| O2B | PB | doub | 1.48Å | 1.55Å | |
| C5' | O5' | sing | 1.43Å | 1.38Å | |
| O5' | PA | sing | 1.61Å | 1.65Å | |
| O3A | PB | sing | 1.61Å | 1.69Å | |
| O3A | PA | sing | 1.61Å | 1.59Å | |
| PB | O1B | sing | 1.61Å | 1.50Å | |
| PB | C3B | sing | 1.82Å | 1.83Å | |
| BR2 | C3B | sing | 1.97Å | 1.93Å | |
| PA | O2A | doub | 1.48Å | 1.49Å | |
| PA | O1A | sing | 1.61Å | 1.47Å | |
| C3B | BR1 | sing | 1.97Å | 1.92Å | |
| C3B | PG | sing | 1.82Å | 1.85Å | |
| O3G | PG | doub | 1.48Å | 1.47Å | |
| PG | O2G | sing | 1.61Å | 1.53Å | |
| PG | O1G | sing | 1.61Å | 1.53Å | |
| N4 | H1 | sing | 0.97Å | 1.00Å | |
| N4 | H2 | sing | 0.97Å | 1.00Å | |
| C5 | H3 | sing | 1.08Å | 1.08Å | |
| C6 | H4 | sing | 1.08Å | 1.08Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C4' | H10 | sing | 1.09Å | 1.10Å | |
| C5' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| O1A | H13 | sing | 0.97Å | 0.95Å | |
| O1B | H14 | sing | 0.97Å | 0.95Å | |
| O2G | H15 | sing | 0.97Å | 0.95Å | |
| O1G | H16 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 119.7° | 119.5° |
| O2 | C2 | N1 | 118.2° | 119.4° |
| N3 | C2 | N1 | 122.1° | 121.1° |
| C2 | N3 | C4 | 120.1° | 120.7° |
| C2 | N1 | C1' | 119.3° | 119.9° |
| C2 | N1 | C6 | 119.6° | 120.3° |
| C1' | C2' | C3' | 102.8° | 104.0° |
| C2' | C1' | N1 | 111.3° | 110.3° |
| C2' | C1' | O4' | 102.3° | 104.8° |
| C2' | C1' | H5 | 108.4° | 110.4° |
| C1' | C2' | H6 | 111.1° | 110.6° |
| C1' | C2' | H7 | 111.1° | 110.5° |
| C2' | C3' | O3' | 116.3° | 110.5° |
| C2' | C3' | C4' | 103.5° | 104.0° |
| C3' | C2' | H6 | 111.1° | 110.5° |
| C3' | C2' | H7 | 111.1° | 110.5° |
| C2' | C3' | H8 | 111.6° | 110.5° |
| N3 | C4 | N4 | 120.4° | 120.2° |
| N3 | C4 | C5 | 120.8° | 119.6° |
| N1 | C1' | O4' | 113.4° | 110.4° |
| C1' | N1 | C6 | 121.1° | 119.8° |
| N1 | C1' | H5 | 111.8° | 110.4° |
| C1' | O4' | C4' | 108.7° | 105.3° |
| O4' | C1' | H5 | 109.0° | 110.4° |
| N1 | C6 | C5 | 121.2° | 119.2° |
| N1 | C6 | H4 | 119.4° | 120.4° |
| O3' | C3' | C4' | 108.6° | 110.5° |
| O3' | C3' | H8 | 108.9° | 110.6° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| C3' | C4' | O4' | 103.7° | 104.8° |
| C3' | C4' | C5' | 109.9° | 110.4° |
| C4' | C3' | H8 | 107.3° | 110.5° |
| C3' | C4' | H10 | 108.5° | 110.4° |
| N4 | C4 | C5 | 118.8° | 120.2° |
| C4 | N4 | H1 | 120.0° | 120.0° |
| C4 | N4 | H2 | 120.0° | 120.0° |
| C4 | C5 | C6 | 116.2° | 119.0° |
| C4 | C5 | H3 | 121.9° | 120.5° |
| O4' | C4' | C5' | 111.8° | 110.3° |
| O4' | C4' | H10 | 113.5° | 110.3° |
| C4' | C5' | O5' | 110.4° | 109.5° |
| C5' | C4' | H10 | 109.3° | 110.4° |
| C4' | C5' | H11 | 109.2° | 109.4° |
| C4' | C5' | H12 | 109.2° | 109.4° |
| C6 | C5 | H3 | 121.9° | 120.5° |
| C5 | C6 | H4 | 119.4° | 120.4° |
| O2B | PB | O3A | 105.0° | 109.4° |
| O2B | PB | O1B | 109.7° | 109.5° |
| O2B | PB | C3B | 111.8° | 109.5° |
| C5' | O5' | PA | 120.6° | 123.0° |
| O5' | C5' | H11 | 109.2° | 109.5° |
| O5' | C5' | H12 | 109.2° | 109.5° |
| O5' | PA | O3A | 106.4° | 109.5° |
| O5' | PA | O2A | 110.7° | 109.5° |
| O5' | PA | O1A | 110.3° | 109.5° |
| PB | O3A | PA | 127.4° | 134.0° |
| O3A | PB | O1B | 112.5° | 109.5° |
| O3A | PB | C3B | 105.2° | 109.5° |
| O3A | PA | O2A | 105.6° | 109.4° |
| O3A | PA | O1A | 111.4° | 109.4° |
| O1B | PB | C3B | 112.4° | 109.5° |
| PB | O1B | H14 | 109.5° | 114.0° |
| PB | C3B | BR2 | 114.3° | 109.5° |
| PB | C3B | BR1 | 113.2° | 109.5° |
| PB | C3B | PG | 112.4° | 109.5° |
| BR2 | C3B | BR1 | 99.4° | 109.5° |
| BR2 | C3B | PG | 109.5° | 109.4° |
| O2A | PA | O1A | 112.3° | 109.4° |
| PA | O1A | H13 | 109.5° | 114.0° |
| BR1 | C3B | PG | 107.1° | 109.5° |
| C3B | PG | O3G | 110.8° | 109.5° |
| C3B | PG | O2G | 106.9° | 109.5° |
| C3B | PG | O1G | 107.3° | 109.5° |
| O3G | PG | O2G | 114.5° | 109.4° |
| O3G | PG | O1G | 108.8° | 109.5° |
| O2G | PG | O1G | 108.3° | 109.5° |
| PG | O2G | H15 | 109.5° | 114.0° |
| PG | O1G | H16 | 109.5° | 114.0° |
| H1 | N4 | H2 | 120.0° | 120.0° |
| H6 | C2' | H7 | 109.5° | 110.6° |
| H11 | C5' | H12 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.4° | 179.9° |
| O2 | C2 | N3 | C4 | 179.5° | 180.0° |
| O2 | C2 | N1 | C1' | 0.6° | 0.0° |
| O2 | C2 | N1 | C6 | 179.9° | 179.8° |
| N3 | C2 | N1 | C1' | 178.9° | 179.9° |
| N3 | C2 | N1 | C6 | 0.4° | 0.3° |
| C2 | N3 | C4 | N4 | 178.8° | 180.0° |
| C2 | N3 | C4 | C5 | 0.5° | 0.2° |
| C2 | N1 | C1' | C2' | 89.9° | 61.9° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| C2 | N1 | C1' | C6 | 179.3° | 179.7° |
| C2 | N1 | C1' | O4' | 155.3° | 53.5° |
| C2 | N1 | C6 | C5 | 0.2° | 0.3° |
| C2 | N1 | C6 | H4 | 179.9° | 179.7° |
| C2 | N1 | C1' | H5 | 31.6° | 175.8° |
| C1' | C2' | C3' | H6 | 118.9° | 118.7° |
| C1' | C2' | C3' | H7 | 118.9° | 118.6° |
| C2' | C1' | N1 | O4' | 114.8° | 115.4° |
| C2' | C1' | N1 | H5 | 121.5° | 122.3° |
| C2' | C1' | O4' | H5 | 114.7° | 118.9° |
| C2' | C1' | N1 | C6 | 89.3° | 117.9° |
| C1' | C2' | C3' | O3' | 159.2° | 118.7° |
| C1' | C2' | C3' | C4' | 40.2° | 0.0° |
| C2' | C1' | O4' | C4' | 1.9° | 40.5° |
| C1' | C2' | H6 | H7 | 123.1° | 122.7° |
| C1' | C2' | C3' | H8 | 74.9° | 118.6° |
| C3' | C2' | C1' | N1 | 94.5° | 142.8° |
| C3' | C2' | C1' | O4' | 27.0° | 24.0° |
| C2' | C3' | O3' | C4' | 116.3° | 114.6° |
| C2' | C3' | O3' | H8 | 127.2° | 122.7° |
| C2' | C3' | C4' | H8 | 118.1° | 118.6° |
| C2' | C3' | C4' | O4' | 44.0° | 24.0° |
| C2' | C3' | C4' | C5' | 163.6° | 142.8° |
| C3' | C2' | C1' | H5 | 142.1° | 94.9° |
| C3' | C2' | H6 | H7 | 123.1° | 122.6° |
| C2' | C3' | O3' | H9 | 140.9° | 61.4° |
| C2' | C3' | C4' | H10 | 76.9° | 94.8° |
| N3 | C4 | N4 | C5 | 179.3° | 179.8° |
| N3 | C4 | C5 | C6 | 0.7° | 0.2° |
| N3 | C4 | N4 | H1 | 0.0° | 179.7° |
| N3 | C4 | N4 | H2 | 180.0° | 0.2° |
| N3 | C4 | C5 | H3 | 179.3° | 179.7° |
| N1 | C1' | O4' | H5 | 125.3° | 122.3° |
| N1 | C1' | O4' | C4' | 121.9° | 159.3° |
| C1' | N1 | C6 | C5 | 179.1° | 180.0° |
| C1' | N1 | C6 | H4 | 0.9° | 0.1° |
| N1 | C1' | C2' | H6 | 146.6° | 98.5° |
| N1 | C1' | C2' | H7 | 24.4° | 24.2° |
| O4' | C1' | N1 | C6 | 25.4° | 126.7° |
| C1' | O4' | C4' | C3' | 24.1° | 40.5° |
| C1' | O4' | C4' | C5' | 142.5° | 159.4° |
| O4' | C1' | C2' | H6 | 92.0° | 142.6° |
| O4' | C1' | C2' | H7 | 145.9° | 94.6° |
| C1' | O4' | C4' | H10 | 93.3° | 78.3° |
| N1 | C6 | C5 | C4 | 0.4° | 0.0° |
| N1 | C6 | C5 | H4 | 180.0° | 180.0° |
| N1 | C6 | C5 | H3 | 179.7° | 180.0° |
| C6 | N1 | C1' | H5 | 149.2° | 4.4° |
| O3' | C3' | C4' | H8 | 117.6° | 122.7° |
| O3' | C3' | C4' | O4' | 168.2° | 142.6° |
| O3' | C3' | C4' | C5' | 72.1° | 98.5° |
| O3' | C3' | C2' | H6 | 40.3° | 0.0° |
| O3' | C3' | C2' | H7 | 81.8° | 122.7° |
| O3' | C3' | C4' | H10 | 47.3° | 23.8° |
| C3' | C4' | O4' | C5' | 118.3° | 118.9° |
| C3' | C4' | O4' | H10 | 117.5° | 118.8° |
| C3' | C4' | C5' | H10 | 118.9° | 122.3° |
| C3' | C4' | C5' | O5' | 65.3° | 174.9° |
| C4' | C3' | C2' | H6 | 78.8° | 118.7° |
| C4' | C3' | C2' | H7 | 159.1° | 118.6° |
| C4' | C3' | O3' | H9 | 102.9° | 176.1° |
| C3' | C4' | C5' | H11 | 174.6° | 55.0° |
| C3' | C4' | C5' | H12 | 54.9° | 65.0° |
| N4 | C4 | C5 | C6 | 178.6° | 180.0° |
| C4 | N4 | H1 | H2 | 180.0° | 179.9° |
| N4 | C4 | C5 | H3 | 1.4° | 0.1° |
| C4 | C5 | C6 | H3 | 180.0° | 179.9° |
| C5 | C4 | N4 | H1 | 179.3° | 0.1° |
| C5 | C4 | N4 | H2 | 0.7° | 180.0° |
| C4 | C5 | C6 | H4 | 179.6° | 179.9° |
| O4' | C4' | C5' | H10 | 126.5° | 122.2° |
| O4' | C4' | C5' | O5' | 49.3° | 69.6° |
| C4' | O4' | C1' | H5 | 112.8° | 78.4° |
| O4' | C4' | C3' | H8 | 74.2° | 94.7° |
| O4' | C4' | C5' | H11 | 70.8° | 170.4° |
| O4' | C4' | C5' | H12 | 169.5° | 50.4° |
| C4' | C5' | O5' | H11 | 120.1° | 119.9° |
| C4' | C5' | O5' | H12 | 120.1° | 120.0° |
| C4' | C5' | O5' | PA | 134.9° | 180.0° |
| C5' | C4' | C3' | H8 | 45.5° | 24.2° |
| C4' | C5' | H11 | H12 | 119.6° | 119.9° |
| O2B | PB | O3A | O1B | 119.3° | 120.0° |
| O2B | PB | O3A | C3B | 118.1° | 120.0° |
| O2B | PB | O3A | PA | 143.9° | 60.0° |
| O2B | PB | O1B | C3B | 125.0° | 120.0° |
| O2B | PB | C3B | BR2 | 14.7° | 180.0° |
| O2B | PB | C3B | BR1 | 98.2° | 60.0° |
| O2B | PB | C3B | PG | 140.3° | 60.0° |
| O2B | PB | O1B | H14 | 0.0° | 180.0° |
| C5' | O5' | PA | O3A | 63.6° | 175.1° |
| C5' | O5' | PA | O2A | 177.8° | 55.1° |
| C5' | O5' | PA | O1A | 57.3° | 64.9° |
| O5' | C5' | C4' | H10 | 175.8° | 52.6° |
| O5' | C5' | H11 | H12 | 119.6° | 120.1° |
| O5' | PA | O3A | PB | 110.4° | 164.9° |
| O5' | PA | O3A | O2A | 117.7° | 120.0° |
| O5' | PA | O3A | O1A | 120.2° | 120.1° |
| O5' | PA | O2A | O1A | 123.7° | 120.0° |
| PA | O5' | C5' | H11 | 104.9° | 60.1° |
| PA | O5' | C5' | H12 | 14.8° | 60.0° |
| O5' | PA | O1A | H13 | 124.0° | 60.0° |
| O3A | PB | O1B | C3B | 118.5° | 120.0° |
| O3A | PB | C3B | BR2 | 128.1° | 60.1° |
| PB | O3A | PA | O2A | 131.9° | 44.9° |
| PB | O3A | PA | O1A | 9.8° | 75.0° |
| O3A | PB | C3B | BR1 | 15.3° | 60.0° |
| O3A | PB | C3B | PG | 106.2° | 180.0° |
| O3A | PB | O1B | H14 | 116.5° | 60.0° |
| PA | O3A | PB | O1B | 24.6° | 60.0° |
| PA | O3A | PB | C3B | 98.0° | 180.0° |
| O3A | PA | O2A | O1A | 121.6° | 119.9° |
| O3A | PA | O1A | H13 | 118.2° | 60.1° |
| O1B | PB | C3B | BR2 | 109.1° | 60.0° |
| O1B | PB | C3B | BR1 | 138.0° | 180.0° |
| O1B | PB | C3B | PG | 16.5° | 60.0° |
| PB | C3B | BR2 | BR1 | 120.9° | 120.0° |
| PB | C3B | BR2 | PG | 127.2° | 120.0° |
| PB | C3B | BR1 | PG | 124.4° | 120.0° |
| PB | C3B | PG | O3G | 76.9° | 60.0° |
| PB | C3B | PG | O2G | 48.4° | 60.0° |
| PB | C3B | PG | O1G | 164.4° | 180.0° |
| C3B | PB | O1B | H14 | 125.0° | 60.0° |
| BR2 | C3B | BR1 | PG | 113.9° | 120.0° |
| BR2 | C3B | PG | O3G | 51.3° | 60.0° |
| BR2 | C3B | PG | O2G | 176.7° | 180.0° |
| BR2 | C3B | PG | O1G | 67.4° | 60.0° |
| O2A | PA | O1A | H13 | 0.0° | 180.0° |
| BR1 | C3B | PG | O3G | 158.2° | 180.0° |
| BR1 | C3B | PG | O2G | 76.5° | 60.0° |
| BR1 | C3B | PG | O1G | 39.5° | 60.0° |
| C3B | PG | O3G | O2G | 120.9° | 120.0° |
| C3B | PG | O3G | O1G | 117.8° | 120.0° |
| C3B | PG | O2G | O1G | 115.3° | 120.0° |
| C3B | PG | O2G | H15 | 123.1° | 60.1° |
| C3B | PG | O1G | H16 | 120.0° | 180.0° |
| O3G | PG | O2G | O1G | 121.5° | 120.0° |
| O3G | PG | O2G | H15 | 0.0° | 180.0° |
| O3G | PG | O1G | H16 | 0.0° | 60.0° |
| O2G | PG | O1G | H16 | 125.0° | 60.0° |
| O1G | PG | O2G | H15 | 121.5° | 60.0° |
| H3 | C5 | C6 | H4 | 0.4° | 0.0° |
| H5 | C1' | C2' | H6 | 23.1° | 23.7° |
| H5 | C1' | C2' | H7 | 99.0° | 146.5° |
| H6 | C2' | C3' | H8 | 166.1° | 122.7° |
| H7 | C2' | C3' | H8 | 44.0° | 0.0° |
| H8 | C3' | O3' | H9 | 13.7° | 61.3° |
| H8 | C3' | C4' | H10 | 165.0° | 146.5° |
| H10 | C4' | C5' | H11 | 55.7° | 67.4° |
| H10 | C4' | C5' | H12 | 64.0° | 172.7° |
