VC8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.20Å | |
| C2 | N3 | sing | 1.33Å | 1.33Å | |
| C2 | N1 | sing | 1.35Å | 1.31Å | |
| C2' | C1' | sing | 1.55Å | 1.33Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| N3 | C4 | doub | 1.33Å | 1.33Å | |
| C1' | N1 | sing | 1.47Å | 1.49Å | |
| C1' | O4' | sing | 1.44Å | 1.60Å | |
| N1 | C6 | sing | 1.36Å | 1.33Å | |
| O3' | C3' | sing | 1.43Å | 1.39Å | |
| C3' | C4' | sing | 1.54Å | 1.55Å | |
| C4 | N4 | sing | 1.38Å | 1.45Å | |
| C4 | C5 | sing | 1.41Å | 1.37Å | |
| O4' | C4' | sing | 1.43Å | 1.28Å | |
| C6 | C5 | doub | 1.35Å | 1.38Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| O2B | PB | doub | 1.48Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| PB | O3A | sing | 1.61Å | 1.62Å | |
| PB | O1B | sing | 1.61Å | 1.50Å | |
| PB | C3B | sing | 1.82Å | 1.86Å | |
| O3A | PA | sing | 1.61Å | 1.63Å | |
| O5' | PA | sing | 1.61Å | 1.63Å | |
| CL2 | C3B | sing | 1.80Å | 1.77Å | |
| PA | O2A | doub | 1.48Å | 1.50Å | |
| PA | O1A | sing | 1.61Å | 1.50Å | |
| C3B | CL1 | sing | 1.80Å | 1.78Å | |
| C3B | PG | sing | 1.82Å | 1.85Å | |
| O3G | PG | doub | 1.48Å | 1.50Å | |
| PG | O2G | sing | 1.61Å | 1.51Å | |
| PG | O1G | sing | 1.61Å | 1.50Å | |
| N4 | H1 | sing | 0.97Å | 1.00Å | |
| N4 | H2 | sing | 0.97Å | 1.00Å | |
| C5 | H3 | sing | 1.08Å | 1.08Å | |
| C6 | H4 | sing | 1.08Å | 1.08Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C4' | H10 | sing | 1.09Å | 1.10Å | |
| C5' | H11 | sing | 1.09Å | 1.10Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| O1A | H13 | sing | 0.97Å | 0.95Å | |
| O1B | H14 | sing | 0.97Å | 0.95Å | |
| O2G | H15 | sing | 0.97Å | 0.95Å | |
| O1G | H16 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 120.5° | 119.5° |
| O2 | C2 | N1 | 117.2° | 119.5° |
| N3 | C2 | N1 | 122.3° | 121.0° |
| C2 | N3 | C4 | 120.9° | 120.7° |
| C2 | N1 | C1' | 116.5° | 119.8° |
| C2 | N1 | C6 | 118.0° | 120.4° |
| C1' | C2' | C3' | 108.0° | 101.0° |
| C2' | C1' | N1 | 110.8° | 110.3° |
| C2' | C1' | O4' | 102.8° | 105.1° |
| C2' | C1' | H5 | 110.8° | 110.4° |
| C1' | C2' | H6 | 109.9° | 111.1° |
| C1' | C2' | H7 | 109.8° | 111.2° |
| C2' | C3' | O3' | 118.4° | 110.9° |
| C2' | C3' | C4' | 97.8° | 102.2° |
| C3' | C2' | H6 | 109.8° | 111.1° |
| C3' | C2' | H7 | 109.9° | 111.1° |
| C2' | C3' | H8 | 106.3° | 110.9° |
| N3 | C4 | N4 | 122.2° | 120.2° |
| N3 | C4 | C5 | 119.8° | 119.6° |
| N1 | C1' | O4' | 116.6° | 110.3° |
| C1' | N1 | C6 | 125.4° | 119.8° |
| N1 | C1' | H5 | 108.5° | 110.3° |
| C1' | O4' | C4' | 100.5° | 110.0° |
| O4' | C1' | H5 | 107.1° | 110.3° |
| N1 | C6 | C5 | 122.7° | 119.2° |
| N1 | C6 | H4 | 118.7° | 120.4° |
| O3' | C3' | C4' | 118.7° | 110.9° |
| O3' | C3' | H8 | 108.2° | 110.9° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| C3' | C4' | O4' | 112.2° | 107.6° |
| C3' | C4' | C5' | 122.1° | 109.8° |
| C4' | C3' | H8 | 106.2° | 110.8° |
| C3' | C4' | H10 | 98.7° | 109.8° |
| N4 | C4 | C5 | 118.0° | 120.2° |
| C4 | N4 | H1 | 120.0° | 120.0° |
| C4 | N4 | H2 | 120.0° | 120.0° |
| C4 | C5 | C6 | 116.3° | 119.0° |
| C4 | C5 | H3 | 121.8° | 120.5° |
| O4' | C4' | C5' | 117.9° | 109.8° |
| O4' | C4' | H10 | 100.5° | 109.9° |
| C6 | C5 | H3 | 121.8° | 120.5° |
| C5 | C6 | H4 | 118.7° | 120.4° |
| C4' | C5' | O5' | 87.8° | 109.4° |
| C5' | C4' | H10 | 98.8° | 109.9° |
| C4' | C5' | H11 | 114.6° | 109.5° |
| C4' | C5' | H12 | 114.6° | 109.5° |
| O2B | PB | O3A | 106.9° | 109.5° |
| O2B | PB | O1B | 110.5° | 109.5° |
| O2B | PB | C3B | 110.9° | 109.5° |
| C5' | O5' | PA | 117.8° | 123.0° |
| O5' | C5' | H11 | 114.6° | 109.5° |
| O5' | C5' | H12 | 114.6° | 109.5° |
| O3A | PB | O1B | 111.0° | 109.5° |
| O3A | PB | C3B | 107.2° | 109.5° |
| PB | O3A | PA | 128.7° | 134.0° |
| O1B | PB | C3B | 110.3° | 109.5° |
| PB | O1B | H14 | 109.5° | 114.0° |
| PB | C3B | CL2 | 111.9° | 109.5° |
| PB | C3B | CL1 | 109.5° | 109.5° |
| PB | C3B | PG | 112.0° | 109.5° |
| O3A | PA | O5' | 105.4° | 109.5° |
| O3A | PA | O2A | 107.2° | 109.5° |
| O3A | PA | O1A | 115.3° | 109.4° |
| O5' | PA | O2A | 108.5° | 109.5° |
| O5' | PA | O1A | 106.3° | 109.5° |
| CL2 | C3B | CL1 | 106.9° | 109.4° |
| CL2 | C3B | PG | 110.0° | 109.5° |
| O2A | PA | O1A | 113.7° | 109.5° |
| PA | O1A | H13 | 109.5° | 114.1° |
| CL1 | C3B | PG | 106.4° | 109.5° |
| C3B | PG | O3G | 109.4° | 109.4° |
| C3B | PG | O2G | 107.9° | 109.5° |
| C3B | PG | O1G | 108.1° | 109.5° |
| O3G | PG | O2G | 112.2° | 109.5° |
| O3G | PG | O1G | 109.7° | 109.5° |
| O2G | PG | O1G | 109.4° | 109.5° |
| PG | O2G | H15 | 109.5° | 114.0° |
| PG | O1G | H16 | 109.5° | 114.0° |
| H1 | N4 | H2 | 120.0° | 119.9° |
| H6 | C2' | H7 | 109.4° | 111.0° |
| H11 | C5' | H12 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.8° | 180.0° |
| O2 | C2 | N3 | C4 | 179.7° | 179.9° |
| O2 | C2 | N1 | C1' | 2.3° | 0.0° |
| O2 | C2 | N1 | C6 | 179.9° | 179.7° |
| N3 | C2 | N1 | C1' | 177.5° | 180.0° |
| N3 | C2 | N1 | C6 | 0.3° | 0.2° |
| C2 | N3 | C4 | N4 | 179.7° | 180.0° |
| C2 | N3 | C4 | C5 | 0.4° | 0.4° |
| C2 | N1 | C1' | C2' | 89.6° | 62.1° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| C2 | N1 | C1' | C6 | 177.6° | 179.8° |
| C2 | N1 | C1' | O4' | 153.2° | 53.5° |
| C2 | N1 | C6 | C5 | 0.3° | 0.2° |
| C2 | N1 | C6 | H4 | 179.6° | 179.7° |
| C2 | N1 | C1' | H5 | 32.2° | 175.6° |
| C1' | C2' | C3' | H6 | 119.8° | 117.8° |
| C1' | C2' | C3' | H7 | 119.8° | 118.0° |
| C2' | C1' | N1 | O4' | 117.2° | 115.7° |
| C2' | C1' | N1 | H5 | 121.9° | 122.3° |
| C2' | C1' | O4' | H5 | 116.8° | 119.0° |
| C2' | C1' | N1 | C6 | 87.9° | 117.6° |
| C1' | C2' | C3' | O3' | 146.5° | 84.0° |
| C1' | C2' | C3' | C4' | 17.8° | 34.2° |
| C2' | C1' | O4' | C4' | 44.2° | 24.4° |
| C1' | C2' | H6 | H7 | 120.7° | 124.2° |
| C1' | C2' | C3' | H8 | 91.6° | 152.4° |
| C3' | C2' | C1' | N1 | 89.0° | 155.4° |
| C3' | C2' | C1' | O4' | 36.3° | 36.5° |
| C2' | C3' | O3' | C4' | 118.2° | 112.8° |
| C2' | C3' | O3' | H8 | 120.9° | 123.6° |
| C2' | C3' | C4' | H8 | 109.5° | 118.2° |
| C2' | C3' | C4' | O4' | 13.3° | 21.4° |
| C2' | C3' | C4' | C5' | 161.9° | 140.9° |
| C3' | C2' | C1' | H5 | 150.5° | 82.4° |
| C3' | C2' | H6 | H7 | 120.7° | 124.2° |
| C2' | C3' | O3' | H9 | 180.0° | 61.5° |
| C2' | C3' | C4' | H10 | 91.9° | 98.2° |
| N3 | C4 | N4 | C5 | 179.9° | 179.6° |
| N3 | C4 | C5 | C6 | 0.3° | 0.4° |
| N3 | C4 | N4 | H1 | 0.0° | 179.7° |
| N3 | C4 | N4 | H2 | 180.0° | 0.4° |
| N3 | C4 | C5 | H3 | 179.7° | 179.7° |
| N1 | C1' | O4' | H5 | 121.7° | 122.1° |
| N1 | C1' | O4' | C4' | 77.3° | 143.3° |
| C1' | N1 | C6 | C5 | 177.2° | 180.0° |
| C1' | N1 | C6 | H4 | 2.8° | 0.0° |
| N1 | C1' | C2' | H6 | 151.2° | 86.8° |
| N1 | C1' | C2' | H7 | 30.8° | 37.4° |
| O4' | C1' | N1 | C6 | 29.2° | 126.7° |
| C1' | O4' | C4' | C3' | 33.0° | 1.7° |
| C1' | O4' | C4' | C5' | 176.9° | 117.8° |
| O4' | C1' | C2' | H6 | 83.5° | 154.3° |
| O4' | C1' | C2' | H7 | 156.1° | 81.5° |
| C1' | O4' | C4' | H10 | 70.9° | 121.2° |
| N1 | C6 | C5 | C4 | 0.0° | 0.1° |
| N1 | C6 | C5 | H4 | 180.0° | 180.0° |
| N1 | C6 | C5 | H3 | 180.0° | 180.0° |
| C6 | N1 | C1' | H5 | 150.2° | 4.6° |
| O3' | C3' | C4' | H8 | 122.0° | 123.6° |
| O3' | C3' | C4' | O4' | 115.2° | 96.8° |
| O3' | C3' | C4' | C5' | 33.4° | 22.7° |
| O3' | C3' | C2' | H6 | 26.7° | 33.8° |
| O3' | C3' | C2' | H7 | 93.7° | 158.0° |
| O3' | C3' | C4' | H10 | 139.6° | 143.6° |
| C3' | C4' | O4' | C5' | 150.1° | 119.4° |
| C3' | C4' | O4' | H10 | 104.0° | 119.6° |
| C3' | C4' | C5' | H10 | 106.1° | 120.9° |
| C3' | C4' | C5' | O5' | 102.6° | 175.0° |
| C4' | C3' | C2' | H6 | 102.0° | 152.0° |
| C4' | C3' | C2' | H7 | 137.6° | 83.8° |
| C4' | C3' | O3' | H9 | 61.9° | 174.3° |
| C3' | C4' | C5' | H11 | 141.3° | 65.0° |
| C3' | C4' | C5' | H12 | 13.5° | 55.0° |
| N4 | C4 | C5 | C6 | 179.8° | 180.0° |
| C4 | N4 | H1 | H2 | 180.0° | 179.9° |
| N4 | C4 | C5 | H3 | 0.2° | 0.1° |
| C4 | C5 | C6 | H3 | 180.0° | 179.9° |
| C5 | C4 | N4 | H1 | 179.9° | 0.1° |
| C5 | C4 | N4 | H2 | 0.1° | 180.0° |
| C4 | C5 | C6 | H4 | 180.0° | 180.0° |
| O4' | C4' | C5' | H10 | 107.0° | 121.0° |
| O4' | C4' | C5' | O5' | 110.5° | 66.9° |
| C4' | O4' | C1' | H5 | 161.0° | 94.6° |
| O4' | C4' | C3' | H8 | 122.8° | 139.6° |
| O4' | C4' | C5' | H11 | 5.6° | 53.1° |
| O4' | C4' | C5' | H12 | 133.4° | 173.1° |
| C4' | C5' | O5' | H11 | 116.1° | 120.0° |
| C4' | C5' | O5' | H12 | 116.1° | 120.0° |
| C4' | C5' | O5' | PA | 126.6° | 180.0° |
| C5' | C4' | C3' | H8 | 88.6° | 100.9° |
| C4' | C5' | H11 | H12 | 130.3° | 120.0° |
| O2B | PB | O3A | O1B | 120.5° | 120.0° |
| O2B | PB | O3A | C3B | 119.0° | 120.0° |
| O2B | PB | O1B | C3B | 123.0° | 120.0° |
| O2B | PB | O3A | PA | 149.7° | 60.0° |
| O2B | PB | C3B | CL2 | 15.9° | 180.0° |
| O2B | PB | C3B | CL1 | 102.3° | 60.0° |
| O2B | PB | C3B | PG | 140.0° | 60.0° |
| O2B | PB | O1B | H14 | 0.0° | 180.0° |
| C5' | O5' | PA | O3A | 60.6° | 175.0° |
| C5' | O5' | PA | O2A | 175.2° | 55.0° |
| C5' | O5' | PA | O1A | 62.2° | 65.0° |
| O5' | C5' | C4' | H10 | 3.5° | 54.1° |
| O5' | C5' | H11 | H12 | 130.3° | 120.0° |
| O3A | PB | O1B | C3B | 118.6° | 120.0° |
| PB | O3A | PA | O5' | 116.5° | 165.0° |
| O3A | PB | C3B | CL2 | 132.3° | 60.0° |
| PB | O3A | PA | O2A | 128.0° | 45.0° |
| PB | O3A | PA | O1A | 0.4° | 75.0° |
| O3A | PB | C3B | CL1 | 14.1° | 60.0° |
| O3A | PB | C3B | PG | 103.6° | 180.0° |
| O3A | PB | O1B | H14 | 118.4° | 60.0° |
| O1B | PB | O3A | PA | 29.1° | 60.0° |
| O1B | PB | C3B | CL2 | 106.8° | 60.0° |
| O1B | PB | C3B | CL1 | 134.9° | 180.0° |
| O1B | PB | C3B | PG | 17.2° | 60.1° |
| C3B | PB | O3A | PA | 91.3° | 180.0° |
| PB | C3B | CL2 | CL1 | 119.8° | 120.0° |
| PB | C3B | CL2 | PG | 125.1° | 120.0° |
| PB | C3B | CL1 | PG | 121.1° | 120.0° |
| PB | C3B | PG | O3G | 78.2° | 60.0° |
| PB | C3B | PG | O2G | 44.2° | 60.0° |
| PB | C3B | PG | O1G | 162.4° | 180.0° |
| C3B | PB | O1B | H14 | 123.0° | 60.0° |
| O3A | PA | O5' | O2A | 114.6° | 120.0° |
| O3A | PA | O5' | O1A | 122.8° | 120.0° |
| O3A | PA | O2A | O1A | 128.6° | 120.0° |
| O3A | PA | O1A | H13 | 124.4° | 60.0° |
| O5' | PA | O2A | O1A | 118.0° | 120.0° |
| PA | O5' | C5' | H11 | 117.3° | 60.0° |
| PA | O5' | C5' | H12 | 10.4° | 60.0° |
| O5' | PA | O1A | H13 | 119.2° | 59.9° |
| CL2 | C3B | CL1 | PG | 117.5° | 120.0° |
| CL2 | C3B | PG | O3G | 46.9° | 60.0° |
| CL2 | C3B | PG | O2G | 169.2° | 180.0° |
| CL2 | C3B | PG | O1G | 72.5° | 59.9° |
| O2A | PA | O1A | H13 | 0.0° | 180.0° |
| CL1 | C3B | PG | O3G | 162.3° | 180.0° |
| CL1 | C3B | PG | O2G | 75.4° | 60.0° |
| CL1 | C3B | PG | O1G | 42.9° | 60.1° |
| C3B | PG | O3G | O2G | 119.7° | 120.0° |
| C3B | PG | O3G | O1G | 118.5° | 119.9° |
| C3B | PG | O2G | O1G | 117.4° | 120.0° |
| C3B | PG | O2G | H15 | 120.6° | 60.1° |
| C3B | PG | O1G | H16 | 119.2° | 180.0° |
| O3G | PG | O2G | O1G | 122.0° | 120.0° |
| O3G | PG | O2G | H15 | 0.0° | 180.0° |
| O3G | PG | O1G | H16 | 0.0° | 60.1° |
| O2G | PG | O1G | H16 | 123.5° | 60.0° |
| O1G | PG | O2G | H15 | 122.0° | 60.0° |
| H3 | C5 | C6 | H4 | 0.1° | 0.1° |
| H5 | C1' | C2' | H6 | 30.7° | 35.4° |
| H5 | C1' | C2' | H7 | 89.7° | 159.6° |
| H6 | C2' | C3' | H8 | 148.6° | 89.8° |
| H7 | C2' | C3' | H8 | 28.1° | 34.4° |
| H8 | C3' | O3' | H9 | 59.1° | 62.1° |
| H8 | C3' | C4' | H10 | 17.6° | 20.0° |
| H10 | C4' | C5' | H11 | 112.6° | 174.1° |
| H10 | C4' | C5' | H12 | 119.6° | 65.9° |
