VC7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O6 | C6 | doub | 1.22Å | 1.24Å | |
| C6 | N1 | sing | 1.35Å | 1.42Å | |
| C6 | C5 | sing | 1.41Å | 1.33Å | |
| N1 | C2 | sing | 1.36Å | 1.39Å | |
| N7 | C5 | sing | 1.36Å | 1.35Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.34Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.34Å | Aromatic |
| CP2 | P | sing | 1.82Å | 1.72Å | |
| C8 | N9 | sing | 1.36Å | 1.33Å | Aromatic |
| C2 | N2 | sing | 1.37Å | 1.32Å | |
| C2 | N3 | doub | 1.31Å | 1.33Å | |
| C4 | N3 | sing | 1.34Å | 1.34Å | |
| C4 | N9 | sing | 1.37Å | 1.32Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.47Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.62Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| O4' | C4' | sing | 1.44Å | 1.42Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.47Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| C2' | O2' | sing | 1.43Å | 1.46Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| CP2 | HCP2 | sing | 1.09Å | 1.10Å | |
| CP2 | HCP3 | sing | 1.09Å | 1.10Å | |
| CP2 | HCP1 | sing | 1.09Å | 1.10Å | |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| N2 | H21 | sing | 0.97Å | 1.00Å | |
| N2 | H22 | sing | 0.97Å | 1.00Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.56Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O6 | C6 | N1 | 119.8° | 120.8° |
| O6 | C6 | C5 | 120.7° | 120.8° |
| N1 | C6 | C5 | 119.3° | 118.4° |
| C6 | N1 | C2 | 120.1° | 120.3° |
| C6 | N1 | H1 | 119.9° | 119.8° |
| C6 | C5 | N7 | 133.4° | 134.2° |
| C6 | C5 | C4 | 118.0° | 118.6° |
| N1 | C2 | N2 | 121.2° | 119.0° |
| N1 | C2 | N3 | 118.1° | 121.9° |
| C2 | N1 | H1 | 120.0° | 119.8° |
| C5 | N7 | C8 | 105.8° | 109.3° |
| N7 | C5 | C4 | 108.6° | 107.2° |
| N7 | C8 | N9 | 109.9° | 109.8° |
| N7 | C8 | H8 | 125.1° | 125.1° |
| C5 | C4 | N3 | 124.2° | 119.7° |
| C5 | C4 | N9 | 108.1° | 106.1° |
| CP2 | P | OP1 | 105.1° | 109.5° |
| CP2 | P | O5' | 105.4° | 109.4° |
| P | CP2 | HCP2 | 109.5° | 109.5° |
| P | CP2 | HCP3 | 109.5° | 109.5° |
| P | CP2 | HCP1 | 109.5° | 109.5° |
| CP2 | P | OP3 | 103.7° | 109.5° |
| C8 | N9 | C4 | 107.6° | 107.5° |
| C8 | N9 | C1' | 133.1° | 126.3° |
| N9 | C8 | H8 | 125.1° | 125.1° |
| N2 | C2 | N3 | 120.7° | 119.1° |
| C2 | N2 | H21 | 120.0° | 120.0° |
| C2 | N2 | H22 | 120.0° | 120.0° |
| C2 | N3 | C4 | 120.2° | 121.2° |
| N3 | C4 | N9 | 127.7° | 134.2° |
| C4 | N9 | C1' | 119.0° | 126.3° |
| N9 | C1' | O4' | 100.3° | 110.7° |
| N9 | C1' | C2' | 122.5° | 110.6° |
| N9 | C1' | H1' | 110.1° | 110.6° |
| OP1 | P | O5' | 111.0° | 109.5° |
| OP1 | P | OP3 | 124.3° | 109.5° |
| P | O5' | C5' | 119.3° | 123.0° |
| O5' | P | OP3 | 105.7° | 109.5° |
| C1' | O4' | C4' | 106.2° | 107.0° |
| O4' | C1' | C2' | 103.1° | 103.5° |
| O4' | C1' | H1' | 110.6° | 110.6° |
| O4' | C4' | C5' | 109.9° | 110.0° |
| O4' | C4' | C3' | 105.1° | 107.3° |
| O4' | C4' | H4' | 111.1° | 109.9° |
| O5' | C5' | C4' | 110.0° | 109.4° |
| O5' | C5' | H5' | 109.3° | 109.5° |
| O5' | C5' | H5'' | 109.3° | 109.5° |
| C1' | C2' | C3' | 100.0° | 102.1° |
| C1' | C2' | O2' | 108.5° | 110.9° |
| C2' | C1' | H1' | 109.4° | 110.6° |
| C1' | C2' | H2' | 111.9° | 110.9° |
| C5' | C4' | C3' | 110.7° | 109.9° |
| C5' | C4' | H4' | 109.7° | 109.8° |
| C4' | C5' | H5' | 109.3° | 109.5° |
| C4' | C5' | H5'' | 109.4° | 109.5° |
| C4' | C3' | C2' | 94.8° | 104.2° |
| C4' | C3' | O3' | 108.0° | 110.5° |
| C4' | C3' | H3' | 113.7° | 110.6° |
| C3' | C4' | H4' | 110.3° | 109.9° |
| C3' | C2' | O2' | 110.7° | 110.9° |
| C2' | C3' | O3' | 111.2° | 110.5° |
| C3' | C2' | H2' | 112.3° | 110.9° |
| C2' | C3' | H3' | 113.3° | 110.5° |
| O2' | C2' | H2' | 112.8° | 110.9° |
| C2' | O2' | HO2' | 109.5° | 113.9° |
| O3' | C3' | H3' | 114.2° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| HCP2 | CP2 | HCP3 | 109.5° | 109.4° |
| HCP2 | CP2 | HCP1 | 109.5° | 109.4° |
| HCP3 | CP2 | HCP1 | 109.4° | 109.5° |
| H21 | N2 | H22 | 120.0° | 120.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O6 | C6 | N1 | C5 | 176.0° | 180.0° |
| O6 | C6 | N1 | C2 | 179.0° | 179.9° |
| O6 | C6 | C5 | N7 | 4.0° | 0.1° |
| O6 | C6 | C5 | C4 | 178.8° | 179.8° |
| O6 | C6 | N1 | H1 | 1.0° | 0.0° |
| C6 | N1 | C2 | H1 | 180.0° | 180.0° |
| N1 | C6 | C5 | N7 | 179.9° | 179.9° |
| N1 | C6 | C5 | C4 | 2.9° | 0.2° |
| C6 | N1 | C2 | N2 | 178.6° | 180.0° |
| C6 | N1 | C2 | N3 | 2.3° | 0.3° |
| C5 | C6 | N1 | C2 | 3.0° | 0.1° |
| C6 | C5 | N7 | C4 | 177.4° | 179.7° |
| C6 | C5 | N7 | C8 | 178.7° | 179.7° |
| C6 | C5 | C4 | N3 | 2.4° | 0.2° |
| C6 | C5 | C4 | N9 | 177.8° | 179.7° |
| C5 | C6 | N1 | H1 | 177.0° | 180.0° |
| N1 | C2 | N2 | N3 | 179.1° | 179.7° |
| N1 | C2 | N3 | C4 | 1.6° | 0.4° |
| N1 | C2 | N2 | H21 | 179.1° | 179.7° |
| N1 | C2 | N2 | H22 | 0.9° | 0.3° |
| C5 | N7 | C8 | N9 | 2.1° | 0.0° |
| N7 | C5 | C4 | N3 | 179.8° | 179.9° |
| N7 | C5 | C4 | N9 | 0.0° | 0.0° |
| C5 | N7 | C8 | H8 | 177.9° | 179.9° |
| C8 | N7 | C5 | C4 | 1.3° | 0.0° |
| N7 | C8 | N9 | H8 | 180.0° | 179.9° |
| N7 | C8 | N9 | C4 | 2.2° | 0.1° |
| N7 | C8 | N9 | C1' | 176.5° | 180.0° |
| C5 | C4 | N9 | C8 | 1.3° | 0.1° |
| C5 | C4 | N3 | C2 | 1.7° | 0.1° |
| C5 | C4 | N3 | N9 | 179.8° | 179.9° |
| C5 | C4 | N9 | C1' | 176.6° | 180.0° |
| CP2 | P | OP1 | O5' | 113.5° | 120.0° |
| CP2 | P | OP1 | OP3 | 118.7° | 120.0° |
| CP2 | P | O5' | OP3 | 109.4° | 120.0° |
| CP2 | P | O5' | C5' | 166.9° | 175.0° |
| P | CP2 | HCP2 | HCP3 | 120.0° | 120.0° |
| P | CP2 | HCP2 | HCP1 | 120.0° | 120.0° |
| P | CP2 | HCP3 | HCP1 | 120.0° | 120.0° |
| CP2 | P | OP3 | HOP3 | 119.4° | 60.0° |
| C8 | N9 | C4 | N3 | 178.5° | 179.9° |
| C8 | N9 | C4 | C1' | 175.3° | 180.0° |
| C8 | N9 | C1' | O4' | 14.3° | 19.1° |
| C8 | N9 | C1' | C2' | 98.5° | 95.0° |
| C8 | N9 | C1' | H1' | 130.9° | 142.1° |
| N2 | C2 | N3 | C4 | 179.3° | 180.0° |
| N2 | C2 | N1 | H1 | 1.4° | 0.0° |
| C2 | N2 | H21 | H22 | 180.0° | 180.0° |
| C2 | N3 | C4 | N9 | 178.6° | 180.0° |
| N3 | C2 | N1 | H1 | 177.7° | 179.7° |
| N3 | C2 | N2 | H21 | 0.0° | 0.1° |
| N3 | C2 | N2 | H22 | 180.0° | 180.0° |
| N3 | C4 | N9 | C1' | 3.2° | 0.1° |
| C4 | N9 | C1' | O4' | 159.5° | 160.8° |
| C4 | N9 | C1' | C2' | 87.7° | 85.0° |
| C4 | N9 | C1' | H1' | 42.9° | 37.9° |
| C4 | N9 | C8 | H8 | 177.9° | 180.0° |
| N9 | C1' | O4' | C2' | 127.0° | 118.6° |
| N9 | C1' | O4' | H1' | 116.2° | 122.9° |
| N9 | C1' | O4' | C4' | 123.0° | 158.7° |
| N9 | C1' | C2' | H1' | 130.9° | 122.9° |
| N9 | C1' | C2' | C3' | 75.7° | 155.7° |
| N9 | C1' | C2' | O2' | 168.4° | 86.1° |
| N9 | C1' | C2' | H2' | 43.3° | 37.5° |
| C1' | N9 | C8 | H8 | 3.5° | 0.1° |
| OP1 | P | O5' | OP3 | 137.3° | 120.0° |
| OP1 | P | O5' | C5' | 79.8° | 55.0° |
| OP1 | P | CP2 | HCP2 | 180.0° | 60.0° |
| OP1 | P | CP2 | HCP3 | 60.0° | 179.9° |
| OP1 | P | CP2 | HCP1 | 60.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| P | O5' | C5' | C4' | 138.9° | 180.0° |
| P | O5' | C5' | H5' | 101.0° | 60.0° |
| P | O5' | C5' | H5'' | 18.8° | 60.0° |
| O5' | P | CP2 | HCP2 | 62.7° | 60.0° |
| O5' | P | CP2 | HCP3 | 177.3° | 60.0° |
| O5' | P | CP2 | HCP1 | 57.4° | 180.0° |
| O5' | P | OP3 | HOP3 | 130.0° | 60.0° |
| O4' | C1' | C2' | H1' | 117.7° | 118.5° |
| C1' | O4' | C4' | C5' | 149.5° | 146.0° |
| C1' | O4' | C4' | C3' | 30.4° | 26.5° |
| O4' | C1' | C2' | C3' | 35.6° | 37.0° |
| O4' | C1' | C2' | O2' | 80.3° | 155.2° |
| O4' | C1' | C2' | H2' | 154.7° | 81.1° |
| C1' | O4' | C4' | H4' | 89.0° | 92.9° |
| O4' | C4' | C5' | O5' | 51.0° | 67.1° |
| C4' | O4' | C1' | C2' | 4.0° | 40.1° |
| O4' | C4' | C5' | C3' | 115.6° | 117.9° |
| O4' | C4' | C5' | H4' | 122.5° | 121.1° |
| O4' | C4' | C3' | H4' | 119.9° | 119.5° |
| O4' | C4' | C3' | C2' | 51.3° | 2.0° |
| O4' | C4' | C3' | O3' | 165.4° | 120.7° |
| C4' | O4' | C1' | H1' | 120.8° | 78.4° |
| O4' | C4' | C3' | H3' | 66.8° | 116.7° |
| O4' | C4' | C5' | H5' | 171.1° | 172.9° |
| O4' | C4' | C5' | H5'' | 69.0° | 52.9° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.1° | 120.0° |
| O5' | C5' | C4' | C3' | 64.6° | 175.0° |
| O5' | C5' | C4' | H4' | 173.5° | 54.0° |
| O5' | C5' | H5' | H5'' | 119.8° | 120.0° |
| C5' | O5' | P | OP3 | 57.5° | 65.0° |
| C1' | C2' | C3' | C4' | 51.3° | 20.9° |
| C1' | C2' | C3' | O2' | 114.2° | 118.2° |
| C1' | C2' | C3' | H2' | 118.7° | 118.2° |
| C1' | C2' | O2' | H2' | 124.5° | 123.7° |
| C1' | C2' | C3' | O3' | 162.7° | 97.8° |
| C1' | C2' | C3' | H3' | 67.2° | 139.7° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C5' | C4' | C3' | H4' | 121.6° | 121.0° |
| C5' | C4' | C3' | C2' | 169.9° | 121.6° |
| C5' | C4' | C3' | O3' | 76.0° | 119.7° |
| C5' | C4' | C3' | H3' | 51.8° | 2.9° |
| C4' | C5' | H5' | H5'' | 119.8° | 120.0° |
| C4' | C3' | C2' | O3' | 111.5° | 118.7° |
| C4' | C3' | C2' | H3' | 118.4° | 118.8° |
| C4' | C3' | C2' | O2' | 63.0° | 139.0° |
| C4' | C3' | O3' | H3' | 127.6° | 122.6° |
| C4' | C3' | C2' | H2' | 170.0° | 97.3° |
| C3' | C4' | C5' | H5' | 55.5° | 55.0° |
| C3' | C4' | C5' | H5'' | 175.4° | 65.0° |
| C4' | C3' | O3' | HO3' | 180.0° | 176.2° |
| C3' | C2' | O2' | H2' | 126.7° | 123.7° |
| C2' | C3' | O3' | H3' | 129.7° | 122.6° |
| C3' | C2' | C1' | H1' | 153.3° | 81.5° |
| C2' | C3' | C4' | H4' | 68.6° | 117.4° |
| C3' | C2' | O2' | HO2' | 71.2° | 67.3° |
| C2' | C3' | O3' | HO3' | 77.3° | 61.4° |
| O2' | C2' | C3' | O3' | 48.5° | 20.4° |
| O2' | C2' | C1' | H1' | 37.4° | 36.7° |
| O2' | C2' | C3' | H3' | 178.6° | 102.2° |
| O3' | C3' | C2' | H2' | 78.6° | 144.0° |
| O3' | C3' | C4' | H4' | 45.5° | 1.3° |
| H1' | C1' | C2' | H2' | 87.6° | 160.4° |
| H2' | C2' | C3' | H3' | 51.6° | 21.5° |
| H2' | C2' | O2' | HO2' | 55.5° | 56.3° |
| H3' | C3' | C4' | H4' | 173.4° | 123.8° |
| H3' | C3' | O3' | HO3' | 52.4° | 61.2° |
| H4' | C4' | C5' | H5' | 66.4° | 66.0° |
| H4' | C4' | C5' | H5'' | 53.4° | 174.0° |
| HCP2 | CP2 | HCP3 | HCP1 | 120.0° | 120.0° |
| HCP2 | CP2 | P | OP3 | 48.2° | 180.0° |
| HCP3 | CP2 | P | OP3 | 71.8° | 60.0° |
| HCP1 | CP2 | P | OP3 | 168.2° | 60.0° |
