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SummaryGeometryRelated PDB entries

VC5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O01C02sing1.36Å1.33Å
C02C03doub1.38Å1.40ÅAromatic
C02C24sing1.40Å1.42ÅAromatic
O28C25doub1.22Å1.17Å
C03C04sing1.39Å1.39ÅAromatic
C25C24sing1.47Å1.52Å
C25O26sing1.35Å1.43Å
C27O26sing1.45Å1.42Å
C24C08doub1.40Å1.40ÅAromatic
C04O05sing1.36Å1.34Å
C04C06doub1.39Å1.39ÅAromatic
C16C17doub1.38Å1.39ÅAromatic
C16C15sing1.38Å1.40ÅAromatic
C17C18sing1.38Å1.39ÅAromatic
C08C06sing1.38Å1.38ÅAromatic
C08C09sing1.51Å1.52Å
C06CL7sing1.74Å1.70Å
C15C14doub1.38Å1.42ÅAromatic
C18C19doub1.38Å1.39ÅAromatic
C09C10sing1.53Å1.55Å
C19C14sing1.38Å1.40ÅAromatic
C14C13sing1.51Å1.57Å
C10C11sing1.51Å1.53Å
C13C12sing1.51Å1.56Å
C11C12doub1.38Å1.44ÅAromatic
C11C23sing1.38Å1.41ÅAromatic
C12C20sing1.38Å1.41ÅAromatic
C23C22doub1.38Å1.40ÅAromatic
C20C21doub1.38Å1.40ÅAromatic
C22C21sing1.38Å1.39ÅAromatic
O01H1sing0.97Å0.95Å
C03H2sing1.08Å1.08Å
O05H3sing0.97Å0.95Å
C09H4sing1.09Å1.10Å
C09H5sing1.09Å1.10Å
C10H6sing1.09Å1.10Å
C10H7sing1.09Å1.10Å
C13H8sing1.09Å1.10Å
C13H9sing1.09Å1.10Å
C15H10sing1.08Å1.08Å
C16H11sing1.08Å1.08Å
C17H12sing1.08Å1.08Å
C18H13sing1.08Å1.08Å
C19H14sing1.08Å1.08Å
C20H15sing1.08Å1.08Å
C21H16sing1.08Å1.08Å
C22H17sing1.08Å1.08Å
C23H18sing1.08Å1.08Å
C27H19sing1.09Å1.10Å
C27H20sing1.09Å1.10Å
C27H21sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O01C02C03119.4°120.1°
O01C02C24119.5°120.1°
C02O01H1109.5°113.9°
C03C02C24121.1°119.8°
C02C03C04118.8°120.0°
C02C03H2120.6°120.0°
C02C24C25113.5°120.1°
C02C24C08120.1°119.8°
O28C25C24124.3°120.0°
O28C25O26120.6°120.0°
C03C04O05119.8°119.8°
C03C04C06119.1°120.2°
C04C03H2120.6°119.9°
C24C25O26115.2°120.0°
C25C24C08126.4°120.1°
C25O26C27116.6°117.0°
O26C27H19109.5°109.5°
O26C27H20109.5°109.5°
O26C27H21109.4°109.5°
C24C08C06116.9°119.9°
C24C08C09124.0°120.1°
O05C04C06121.2°119.9°
C04O05H3109.5°114.0°
C04C06C08124.0°120.3°
C04C06CL7115.8°119.8°
C17C16C15120.3°120.0°
C16C17C18118.5°120.0°
C17C16H11119.9°120.0°
C16C17H12120.7°120.0°
C16C15C14122.7°120.0°
C16C15H10118.6°120.0°
C15C16H11119.8°120.0°
C17C18C19120.7°120.0°
C18C17H12120.8°120.0°
C17C18H13119.7°120.0°
C06C08C09119.1°120.0°
C08C06CL7120.2°119.9°
C08C09C10115.0°109.5°
C08C09H4108.1°109.5°
C08C09H5108.1°109.5°
C15C14C19114.8°120.0°
C15C14C13125.8°120.0°
C14C15H10118.7°120.0°
C18C19C14123.0°120.0°
C19C18H13119.6°120.0°
C18C19H14118.5°119.9°
C09C10C11121.9°109.5°
C10C09H4108.1°109.5°
C10C09H5108.0°109.5°
C09C10H6106.3°109.5°
C09C10H7106.3°109.4°
C19C14C13119.4°120.0°
C14C19H14118.5°120.0°
C14C13C12123.1°109.5°
C14C13H8105.9°109.5°
C14C13H9106.0°109.4°
C10C11C12122.2°119.9°
C10C11C23119.2°120.0°
C11C10H6106.3°109.5°
C11C10H7106.3°109.5°
C13C12C11123.5°120.0°
C13C12C20118.9°120.0°
C12C13H8106.0°109.5°
C12C13H9106.0°109.4°
C12C11C23118.6°120.1°
C11C12C20117.5°120.0°
C11C23C22122.4°120.0°
C11C23H18118.8°120.0°
C12C20C21122.9°120.0°
C12C20H15118.6°120.0°
C23C22C21119.2°120.0°
C23C22H17120.4°120.1°
C22C23H18118.8°120.0°
C20C21C22119.3°120.0°
C21C20H15118.5°120.0°
C20C21H16120.4°120.0°
C22C21H16120.4°120.0°
C21C22H17120.4°120.0°
H4C09H5109.5°109.4°
H6C10H7109.5°109.5°
H8C13H9109.5°109.5°
H19C27H20109.4°109.5°
H19C27H21109.4°109.5°
H20C27H21109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C02C03C24179.9°179.7°
O01C02C03C04179.9°180.0°
O01C02C24C250.3°0.0°
O01C02C24C08179.6°179.7°
O01C02C03H20.1°0.1°
C02C03C04H2180.0°179.9°
C03C02C24C25179.8°179.7°
C03C02C24C080.2°0.6°
C02C03C04O05179.8°180.0°
C02C03C04C060.1°0.1°
C03C02O01H1162.5°90.1°
C02C24C25O2863.7°90.0°
C24C02C03C040.0°0.4°
C02C24C25C08180.0°179.7°
C02C24C25O26114.9°90.0°
C02C24C08C060.3°0.5°
C02C24C08C09179.3°179.7°
C24C02O01H117.4°90.3°
C24C02C03H2180.0°179.7°
O28C25C24O26178.6°180.0°
O28C25O26C276.6°0.0°
O28C25C24C08116.3°89.7°
C03C04O05C06179.6°179.9°
C03C04C06C080.0°0.1°
C03C04C06CL7179.9°180.0°
C03C04O05H3180.0°90.0°
C24C25O26C27174.8°180.0°
C25C24C08C06179.7°179.8°
C25C24C08C090.7°0.0°
O26C25C24C0865.1°90.3°
C25O26C27H19180.0°60.0°
C25O26C27H2060.0°180.0°
C25O26C27H2160.0°60.0°
O26C27H19H20120.0°120.1°
O26C27H19H21120.0°120.0°
O26C27H20H21120.0°120.0°
C24C08C06C040.2°0.3°
C24C08C06C09179.0°179.7°
C24C08C06CL7179.9°179.8°
C24C08C09C1072.1°89.8°
C24C08C09H4167.0°30.3°
C24C08C09H548.7°150.2°
O05C04C06C08179.7°179.9°
O05C04C06CL70.3°0.1°
O05C04C03H20.2°0.1°
C04C06C08CL7179.9°180.0°
C04C06C08C09179.2°180.0°
C06C04C03H2179.8°180.0°
C06C04O05H30.3°89.9°
C17C16C15H11180.0°179.9°
C16C17C18H12180.0°180.0°
C17C16C15C140.7°0.0°
C16C17C18C190.3°0.2°
C17C16C15H10179.3°179.9°
C16C17C18H13179.7°180.0°
C15C16C17C180.1°0.1°
C16C15C14H10180.0°180.0°
C16C15C14C191.3°0.3°
C16C15C14C13178.7°180.0°
C15C16C17H12179.8°180.0°
C17C18C19H13180.0°179.8°
C17C18C19C141.0°0.5°
C18C17C16H11179.8°180.0°
C17C18C19H14179.1°180.0°
C06C08C09C10106.8°90.0°
C06C08C09H414.0°150.0°
C06C08C09H5132.4°30.0°
C09C08C06CL70.8°0.0°
C08C09C10H4120.8°120.0°
C08C09C10H5120.8°120.0°
C08C09C10C11145.2°180.0°
C08C09H4H5117.5°120.0°
C08C09C10H693.1°60.0°
C08C09C10H723.5°60.0°
C15C14C19C181.4°0.5°
C15C14C19C13177.6°179.7°
C15C14C13C1256.3°89.5°
C15C14C13H865.5°30.5°
C15C14C13H9178.2°150.5°
C14C15C16H11179.2°180.0°
C15C14C19H14178.6°180.0°
C18C19C14H14180.0°179.5°
C18C19C14C13179.0°179.7°
C19C18C17H12179.7°179.8°
C09C10C11H6121.7°120.0°
C09C10C11H7121.7°119.9°
C09C10C11C12153.5°86.0°
C09C10C11C2328.3°94.3°
C10C09H4H5117.4°119.9°
C09C10H6H7114.4°119.9°
C19C14C13C12126.4°90.7°
C19C14C13H8111.8°149.3°
C19C14C13H94.5°29.2°
C19C14C15H10178.7°179.8°
C14C19C18H13179.0°179.7°
C14C13C12H8121.9°120.0°
C14C13C12H9121.9°119.9°
C14C13C12C1170.4°178.6°
C14C13C12C20112.4°1.4°
C14C13H8H9113.9°120.0°
C13C14C15H101.3°0.0°
C13C14C19H141.0°0.2°
C10C11C12C132.5°0.1°
C10C11C12C23178.2°179.6°
C10C11C12C20179.7°180.0°
C10C11C23C22179.7°179.7°
C11C10C09H424.3°59.9°
C11C10C09H594.0°60.0°
C11C10H6H7114.4°120.0°
C10C11C23H180.4°0.1°
C13C12C11C20177.2°180.0°
C13C12C11C23179.2°179.7°
C13C12C20C21179.1°180.0°
C12C13H8H9113.9°120.0°
C13C12C20H151.0°0.0°
C12C11C23C221.4°0.7°
C11C12C20C211.7°0.0°
C12C11C10H631.7°34.0°
C12C11C10H784.8°154.0°
C11C12C13H851.4°58.6°
C11C12C13H9167.7°61.5°
C11C12C20H15178.3°180.0°
C12C11C23H18178.7°179.7°
C23C11C12C202.0°0.3°
C11C23C22H18180.0°179.6°
C11C23C22C210.3°0.7°
C23C11C10H6150.0°145.7°
C23C11C10H793.4°25.6°
C11C23C22H17179.7°179.7°
C12C20C21H15180.0°180.0°
C12C20C21C220.6°NaN°
C20C12C13H8125.8°121.4°
C20C12C13H99.5°118.6°
C12C20C21H16179.4°180.0°
C23C22C21C200.2°0.3°
C23C22C21H17180.0°179.6°
C23C22C21H16179.8°179.7°
C20C21C22H16180.0°180.0°
C20C21C22H17179.9°180.0°
C22C21C20H15179.4°180.0°
C21C22C23H18179.8°179.7°
H4C09C10H6146.1°180.0°
H4C09C10H797.3°60.0°
H5C09C10H627.7°60.0°
H5C09C10H7144.3°180.0°
H10C15C16H110.8°0.0°
H11C16C17H120.2°0.0°
H12C17C18H130.3°0.1°
H13C18C19H140.9°0.2°
H15C20C21H160.6°0.0°
H16C21C22H170.2°0.0°
H17C22C23H180.3°0.1°
H19C27H20H21120.0°119.9°

246704

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