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Summary Geometry Related PDB entries

VC3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C5	sing	1.47Å	1.47Å
N1	O7	sing	1.22Å	1.22Å
N1	O8	doub	1.21Å	1.21Å
N2	C3	doub	1.31Å	1.31Å	Aromatic
N2	N4	sing	1.40Å	1.40Å	Aromatic
C3	C6	sing	1.41Å	1.41Å	Aromatic
C3	C9	sing	1.48Å	1.48Å	Aromatic
N4	C10	sing	1.35Å	1.35Å	Aromatic
C5	C11	sing	1.39Å	1.39Å	Aromatic
C5	C12	doub	1.39Å	1.39Å	Aromatic
C6	C10	doub	1.35Å	1.35Å	Aromatic
C9	C13	sing	1.40Å	1.40Å	Aromatic
C9	C14	doub	1.40Å	1.40Å	Aromatic
C11	C13	doub	1.38Å	1.38Å	Aromatic
C12	C14	sing	1.38Å	1.38Å	Aromatic
N4	H4	sing	1.00Å	1.00Å
C6	H6	sing	1.08Å	1.08Å
C10	H10	sing	1.08Å	1.08Å
C11	H11	sing	1.08Å	1.08Å
C12	H12	sing	1.08Å	1.08Å
C13	H13	sing	1.08Å	1.08Å
C14	H14	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5	N1	O7	120.4°	120.4°
C5	N1	O8	119.9°	119.9°
N1	C5	C11	118.9°	118.9°
N1	C5	C12	120.0°	120.0°
O7	N1	O8	119.7°	119.7°
C3	N2	N4	107.8°	107.8°
N2	C3	C6	108.2°	108.2°
N2	C3	C9	125.6°	125.6°
N2	N4	C10	108.5°	108.5°
N2	N4	H4	125.7°	125.7°
C6	C3	C9	126.2°	126.2°
C3	C6	C10	107.7°	107.7°
C3	C6	H6	126.1°	126.1°
C3	C9	C13	118.8°	118.8°
C3	C9	C14	120.8°	120.8°
N4	C10	C6	107.8°	107.8°
C10	N4	H4	125.7°	125.7°
N4	C10	H10	126.1°	126.1°
C11	C5	C12	121.2°	121.2°
C5	C11	C13	119.8°	119.8°
C5	C11	H11	120.1°	120.1°
C5	C12	C14	119.3°	119.3°
C5	C12	H12	120.4°	120.3°
C10	C6	H6	126.1°	126.1°
C6	C10	H10	126.1°	126.1°
C13	C9	C14	120.4°	120.4°
C9	C13	C11	119.5°	119.5°
C9	C13	H13	120.3°	120.3°
C9	C14	C12	119.9°	119.9°
C9	C14	H14	120.0°	120.0°
C13	C11	H11	120.1°	120.1°
C11	C13	H13	120.3°	120.3°
C14	C12	H12	120.4°	120.4°
C12	C14	H14	120.1°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C5	N1	O7	O8	179.1°	179.1°
N1	C5	C11	C12	179.2°	179.2°
N1	C5	C11	C13	179.4°	179.4°
N1	C5	C12	C14	179.6°	179.6°
N1	C5	C11	H11	0.6°	0.6°
N1	C5	C12	H12	0.4°	0.4°
O7	N1	C5	C11	10.6°	10.6°
O7	N1	C5	C12	170.1°	170.1°
O8	N1	C5	C11	168.4°	168.4°
O8	N1	C5	C12	10.8°	10.8°
N2	C3	C6	C9	178.2°	178.2°
C3	N2	N4	C10	0.9°	0.9°
N2	C3	C6	C10	0.3°	0.3°
N2	C3	C9	C13	156.9°	156.9°
N2	C3	C9	C14	21.3°	21.3°
C3	N2	N4	H4	179.1°	179.1°
N2	C3	C6	H6	179.6°	179.6°
N4	N2	C3	C6	0.7°	0.7°
N4	N2	C3	C9	178.9°	178.9°
N2	N4	C10	H4	180.0°	180.0°
N2	N4	C10	C6	0.7°	0.7°
N2	N4	C10	H10	179.3°	179.3°
C3	C6	C10	N4	0.2°	0.2°
C3	C6	C10	H6	180.0°	180.0°
C6	C3	C9	C13	21.0°	21.0°
C6	C3	C9	C14	160.9°	160.9°
C3	C6	C10	H10	179.8°	179.8°
C9	C3	C6	C10	178.5°	178.5°
C3	C9	C13	C14	178.2°	178.2°
C3	C9	C13	C11	178.9°	178.9°
C3	C9	C14	C12	179.1°	179.1°
C9	C3	C6	H6	1.5°	1.5°
C3	C9	C13	H13	1.1°	1.1°
C3	C9	C14	H14	0.9°	0.9°
N4	C10	C6	H10	180.0°	180.0°
N4	C10	C6	H6	179.8°	179.8°
C5	C11	C13	C9	0.3°	0.3°
C5	C11	C13	H11	180.0°	180.0°
C11	C5	C12	C14	0.4°	0.4°
C11	C5	C12	H12	179.6°	179.6°
C5	C11	C13	H13	179.7°	179.7°
C5	C12	C14	C9	0.8°	0.8°
C12	C5	C11	C13	0.2°	0.2°
C5	C12	C14	H12	180.0°	180.0°
C12	C5	C11	H11	179.8°	179.8°
C5	C12	C14	H14	179.2°	179.2°
C6	C10	N4	H4	179.3°	179.3°
C9	C13	C11	H13	180.0°	180.0°
C13	C9	C14	C12	1.0°	1.0°
C9	C13	C11	H11	179.6°	179.6°
C13	C9	C14	H14	179.0°	179.0°
C14	C9	C13	C11	0.7°	0.7°
C9	C14	C12	H14	180.0°	180.0°
C9	C14	C12	H12	179.2°	179.2°
C14	C9	C13	H13	179.3°	179.3°
H4	N4	C10	H10	0.7°	0.7°
H6	C6	C10	H10	0.2°	0.2°
H11	C11	C13	H13	0.4°	0.3°
H12	C12	C14	H14	0.8°	0.8°

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