VC1
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O05 | C04 | sing | 1.36Å | 1.39Å | |
C04 | C03 | doub | 1.39Å | 1.40Å | Aromatic |
C04 | C06 | sing | 1.39Å | 1.41Å | Aromatic |
CL7 | C06 | sing | 1.74Å | 1.76Å | |
C03 | C02 | sing | 1.38Å | 1.41Å | Aromatic |
C06 | C08 | doub | 1.38Å | 1.40Å | Aromatic |
C02 | O01 | sing | 1.36Å | 1.36Å | |
C02 | C25 | doub | 1.40Å | 1.41Å | Aromatic |
C13 | C14 | sing | 1.51Å | 1.49Å | |
C13 | C12 | sing | 1.51Å | 1.57Å | |
C15 | C14 | doub | 1.38Å | 1.40Å | Aromatic |
C15 | C16 | sing | 1.38Å | 1.38Å | Aromatic |
C14 | C20 | sing | 1.38Å | 1.39Å | Aromatic |
C08 | C25 | sing | 1.40Å | 1.43Å | Aromatic |
C08 | C09 | sing | 1.51Å | 1.51Å | |
C16 | C17 | doub | 1.38Å | 1.40Å | Aromatic |
C20 | C19 | doub | 1.38Å | 1.38Å | Aromatic |
C17 | C19 | sing | 1.38Å | 1.41Å | Aromatic |
C17 | F18 | sing | 1.35Å | 1.27Å | |
C10 | C09 | sing | 1.53Å | 1.54Å | |
C10 | C11 | sing | 1.51Å | 1.48Å | |
C25 | C26 | sing | 1.47Å | 1.54Å | |
C12 | C11 | doub | 1.38Å | 1.41Å | Aromatic |
C12 | C21 | sing | 1.38Å | 1.43Å | Aromatic |
C11 | C24 | sing | 1.38Å | 1.41Å | Aromatic |
C26 | O27 | sing | 1.35Å | 1.40Å | |
C26 | O29 | doub | 1.22Å | 1.21Å | |
C21 | C22 | doub | 1.38Å | 1.41Å | Aromatic |
O27 | C28 | sing | 1.45Å | 1.43Å | |
C24 | C23 | doub | 1.38Å | 1.40Å | Aromatic |
C22 | C23 | sing | 1.38Å | 1.40Å | Aromatic |
O01 | H1 | sing | 0.97Å | 0.95Å | |
C03 | H2 | sing | 1.08Å | 1.08Å | |
O05 | H3 | sing | 0.97Å | 0.95Å | |
C09 | H4 | sing | 1.09Å | 1.10Å | |
C09 | H5 | sing | 1.09Å | 1.10Å | |
C10 | H6 | sing | 1.09Å | 1.10Å | |
C10 | H7 | sing | 1.09Å | 1.10Å | |
C13 | H8 | sing | 1.09Å | 1.10Å | |
C13 | H9 | sing | 1.09Å | 1.10Å | |
C15 | H10 | sing | 1.08Å | 1.08Å | |
C16 | H11 | sing | 1.08Å | 1.08Å | |
C19 | H12 | sing | 1.08Å | 1.08Å | |
C20 | H13 | sing | 1.08Å | 1.08Å | |
C21 | H14 | sing | 1.08Å | 1.08Å | |
C22 | H15 | sing | 1.08Å | 1.08Å | |
C23 | H16 | sing | 1.08Å | 1.08Å | |
C24 | H17 | sing | 1.08Å | 1.08Å | |
C28 | H18 | sing | 1.09Å | 1.10Å | |
C28 | H19 | sing | 1.09Å | 1.10Å | |
C28 | H20 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O05 | C04 | C03 | 120.9° | 119.9° |
O05 | C04 | C06 | 122.1° | 119.8° |
C04 | O05 | H3 | 109.5° | 114.1° |
C03 | C04 | C06 | 117.0° | 120.3° |
C04 | C03 | C02 | 119.9° | 120.1° |
C04 | C03 | H2 | 120.0° | 120.0° |
C04 | C06 | CL7 | 118.0° | 119.9° |
C04 | C06 | C08 | 124.6° | 120.2° |
CL7 | C06 | C08 | 117.4° | 119.9° |
C03 | C02 | O01 | 119.6° | 120.2° |
C03 | C02 | C25 | 122.8° | 119.7° |
C02 | C03 | H2 | 120.1° | 119.9° |
C06 | C08 | C25 | 118.0° | 119.9° |
C06 | C08 | C09 | 117.0° | 120.1° |
O01 | C02 | C25 | 117.6° | 120.1° |
C02 | O01 | H1 | 109.5° | 114.0° |
C02 | C25 | C08 | 117.7° | 119.8° |
C02 | C25 | C26 | 121.0° | 120.1° |
C14 | C13 | C12 | 113.2° | 109.5° |
C13 | C14 | C15 | 120.3° | 119.9° |
C13 | C14 | C20 | 123.2° | 120.0° |
C14 | C13 | H8 | 108.5° | 109.4° |
C14 | C13 | H9 | 108.5° | 109.4° |
C13 | C12 | C11 | 123.7° | 120.0° |
C13 | C12 | C21 | 119.2° | 120.0° |
C12 | C13 | H8 | 108.6° | 109.5° |
C12 | C13 | H9 | 108.6° | 109.5° |
C14 | C15 | C16 | 124.0° | 120.0° |
C15 | C14 | C20 | 116.3° | 120.1° |
C14 | C15 | H10 | 118.0° | 120.0° |
C15 | C16 | C17 | 118.0° | 120.0° |
C16 | C15 | H10 | 118.0° | 120.0° |
C15 | C16 | H11 | 121.0° | 120.0° |
C14 | C20 | C19 | 122.3° | 120.0° |
C14 | C20 | H13 | 118.8° | 120.0° |
C25 | C08 | C09 | 124.9° | 120.0° |
C08 | C25 | C26 | 121.2° | 120.1° |
C08 | C09 | C10 | 113.9° | 109.5° |
C08 | C09 | H4 | 108.3° | 109.5° |
C08 | C09 | H5 | 108.3° | 109.5° |
C16 | C17 | C19 | 120.0° | 120.0° |
C16 | C17 | F18 | 119.5° | 120.1° |
C17 | C16 | H11 | 121.0° | 120.0° |
C20 | C19 | C17 | 119.4° | 119.9° |
C20 | C19 | H12 | 120.3° | 120.0° |
C19 | C20 | H13 | 118.8° | 119.9° |
C19 | C17 | F18 | 120.6° | 120.0° |
C17 | C19 | H12 | 120.3° | 120.1° |
C09 | C10 | C11 | 119.9° | 109.5° |
C10 | C09 | H4 | 108.4° | 109.5° |
C10 | C09 | H5 | 108.3° | 109.4° |
C09 | C10 | H6 | 106.8° | 109.5° |
C09 | C10 | H7 | 106.8° | 109.4° |
C10 | C11 | C12 | 123.3° | 120.0° |
C10 | C11 | C24 | 117.0° | 120.0° |
C11 | C10 | H6 | 106.8° | 109.5° |
C11 | C10 | H7 | 106.8° | 109.5° |
C25 | C26 | O27 | 121.1° | 120.0° |
C25 | C26 | O29 | 123.8° | 120.0° |
C11 | C12 | C21 | 117.0° | 120.0° |
C12 | C11 | C24 | 119.6° | 120.0° |
C12 | C21 | C22 | 123.0° | 120.0° |
C12 | C21 | H14 | 118.5° | 120.0° |
C11 | C24 | C23 | 122.3° | 120.0° |
C11 | C24 | H17 | 118.9° | 120.0° |
O27 | C26 | O29 | 115.1° | 120.0° |
C26 | O27 | C28 | 118.9° | 117.0° |
C21 | C22 | C23 | 119.1° | 120.0° |
C22 | C21 | H14 | 118.5° | 120.0° |
C21 | C22 | H15 | 120.4° | 120.0° |
O27 | C28 | H18 | 109.5° | 109.5° |
O27 | C28 | H19 | 109.5° | 109.5° |
O27 | C28 | H20 | 109.5° | 109.5° |
C24 | C23 | C22 | 118.9° | 120.0° |
C24 | C23 | H16 | 120.5° | 120.0° |
C23 | C24 | H17 | 118.9° | 120.0° |
C23 | C22 | H15 | 120.5° | 120.0° |
C22 | C23 | H16 | 120.5° | 120.0° |
H4 | C09 | H5 | 109.5° | 109.5° |
H6 | C10 | H7 | 109.5° | 109.5° |
H8 | C13 | H9 | 109.5° | 109.5° |
H18 | C28 | H19 | 109.5° | 109.4° |
H18 | C28 | H20 | 109.5° | 109.4° |
H19 | C28 | H20 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O05 | C04 | C03 | C06 | 179.8° | 179.9° |
O05 | C04 | C06 | CL7 | 0.4° | 0.0° |
O05 | C04 | C03 | C02 | 179.8° | 180.0° |
O05 | C04 | C06 | C08 | 179.2° | 179.9° |
O05 | C04 | C03 | H2 | 0.2° | 0.0° |
C03 | C04 | C06 | CL7 | 179.7° | 179.9° |
C04 | C03 | C02 | H2 | 180.0° | 179.9° |
C03 | C04 | C06 | C08 | 1.0° | 0.0° |
C04 | C03 | C02 | O01 | 179.8° | 180.0° |
C04 | C03 | C02 | C25 | 0.2° | 0.4° |
C03 | C04 | O05 | H3 | 180.0° | 90.0° |
C04 | C06 | CL7 | C08 | 178.8° | 179.9° |
C06 | C04 | C03 | C02 | 0.1° | 0.1° |
C04 | C06 | C08 | C25 | 1.8° | 0.2° |
C04 | C06 | C08 | C09 | 179.1° | 180.0° |
C06 | C04 | C03 | H2 | 179.9° | 180.0° |
C06 | C04 | O05 | H3 | 0.2° | 90.0° |
CL7 | C06 | C08 | C25 | 179.5° | 179.7° |
CL7 | C06 | C08 | C09 | 2.1° | 0.1° |
C03 | C02 | O01 | C25 | 179.7° | 179.7° |
C03 | C02 | C25 | C08 | 0.6° | 0.6° |
C03 | C02 | C25 | C26 | 179.7° | 179.7° |
C03 | C02 | O01 | H1 | 167.7° | 89.7° |
C06 | C08 | C25 | C02 | 1.5° | 0.5° |
C06 | C08 | C25 | C09 | 177.1° | 179.8° |
C06 | C08 | C09 | C10 | 75.1° | 90.0° |
C06 | C08 | C25 | C26 | 179.4° | 179.7° |
C06 | C08 | C09 | H4 | 45.5° | 150.0° |
C06 | C08 | C09 | H5 | 164.2° | 29.9° |
O01 | C02 | C25 | C08 | 179.0° | 179.8° |
O01 | C02 | C25 | C26 | 0.1° | 0.0° |
O01 | C02 | C03 | H2 | 0.2° | 0.0° |
C02 | C25 | C08 | C26 | 179.1° | 179.7° |
C02 | C25 | C08 | C09 | 178.6° | 179.7° |
C02 | C25 | C26 | O27 | 145.0° | 90.0° |
C02 | C25 | C26 | O29 | 35.1° | 89.9° |
C25 | C02 | O01 | H1 | 12.0° | 90.0° |
C25 | C02 | C03 | H2 | 179.8° | 179.7° |
C14 | C13 | C12 | H8 | 120.5° | 120.0° |
C14 | C13 | C12 | H9 | 120.5° | 120.0° |
C13 | C14 | C15 | C20 | 175.6° | 179.6° |
C13 | C14 | C15 | C16 | 177.4° | 180.0° |
C13 | C14 | C20 | C19 | 177.2° | 179.8° |
C14 | C13 | C12 | C11 | 161.4° | 178.7° |
C14 | C13 | C12 | C21 | 17.2° | 1.4° |
C14 | C13 | H8 | H9 | 118.3° | 119.9° |
C13 | C14 | C15 | H10 | 2.6° | 0.1° |
C13 | C14 | C20 | H13 | 2.8° | 0.1° |
C12 | C13 | C14 | C15 | 80.7° | 90.3° |
C12 | C13 | C14 | C20 | 94.5° | 89.3° |
C13 | C12 | C11 | C10 | 1.9° | 0.0° |
C13 | C12 | C11 | C21 | 178.6° | 180.0° |
C13 | C12 | C11 | C24 | 179.9° | 179.7° |
C13 | C12 | C21 | C22 | 180.0° | 180.0° |
C12 | C13 | H8 | H9 | 118.3° | 120.0° |
C13 | C12 | C21 | H14 | 0.0° | 0.0° |
C14 | C15 | C16 | H10 | 180.0° | 179.9° |
C14 | C15 | C16 | C17 | 0.7° | 0.1° |
C15 | C14 | C20 | C19 | 1.8° | 0.6° |
C15 | C14 | C13 | H8 | 158.7° | 149.7° |
C15 | C14 | C13 | H9 | 39.8° | 29.7° |
C14 | C15 | C16 | H11 | 179.3° | 179.9° |
C15 | C14 | C20 | H13 | 178.2° | 179.7° |
C16 | C15 | C14 | C20 | 1.8° | 0.4° |
C15 | C16 | C17 | H11 | 180.0° | 180.0° |
C15 | C16 | C17 | C19 | 0.5° | 0.1° |
C15 | C16 | C17 | F18 | 179.9° | 180.0° |
C14 | C20 | C19 | H13 | 180.0° | 179.7° |
C14 | C20 | C19 | C17 | 0.7° | 0.6° |
C20 | C14 | C13 | H8 | 26.1° | 30.7° |
C20 | C14 | C13 | H9 | 144.9° | 150.7° |
C20 | C14 | C15 | H10 | 178.2° | 179.7° |
C14 | C20 | C19 | H12 | 179.3° | 179.7° |
C25 | C08 | C09 | C10 | 102.0° | 89.8° |
C08 | C25 | C26 | O27 | 35.9° | 90.2° |
C08 | C25 | C26 | O29 | 144.0° | 89.8° |
C25 | C08 | C09 | H4 | 137.3° | 30.3° |
C25 | C08 | C09 | H5 | 18.7° | 150.3° |
C08 | C09 | C10 | H4 | 120.7° | 120.1° |
C08 | C09 | C10 | H5 | 120.6° | 120.0° |
C08 | C09 | C10 | C11 | 156.7° | 180.0° |
C09 | C08 | C25 | C26 | 2.3° | 0.0° |
C08 | C09 | H4 | H5 | 118.0° | 120.0° |
C08 | C09 | C10 | H6 | 35.3° | 59.9° |
C08 | C09 | C10 | H7 | 81.8° | 60.0° |
C16 | C17 | C19 | C20 | 0.5° | 0.3° |
C16 | C17 | C19 | F18 | 179.6° | 179.9° |
C17 | C16 | C15 | H10 | 179.3° | 180.0° |
C16 | C17 | C19 | H12 | 179.5° | 180.0° |
C20 | C19 | C17 | H12 | 180.0° | 179.7° |
C20 | C19 | C17 | F18 | 179.9° | 179.8° |
C19 | C17 | C16 | H11 | 179.5° | 179.9° |
C17 | C19 | C20 | H13 | 179.3° | 179.8° |
F18 | C17 | C16 | H11 | 0.1° | 0.0° |
F18 | C17 | C19 | H12 | 0.1° | 0.0° |
C09 | C10 | C11 | H6 | 121.5° | 120.0° |
C09 | C10 | C11 | H7 | 121.5° | 120.0° |
C09 | C10 | C11 | C12 | 118.9° | 86.0° |
C09 | C10 | C11 | C24 | 63.0° | 94.3° |
C10 | C09 | H4 | H5 | 118.0° | 120.0° |
C09 | C10 | H6 | H7 | 115.3° | 120.0° |
C10 | C11 | C12 | C24 | 178.1° | 179.7° |
C10 | C11 | C12 | C21 | 179.5° | 180.0° |
C10 | C11 | C24 | C23 | 179.2° | 179.7° |
C11 | C10 | C09 | H4 | 82.6° | 60.0° |
C11 | C10 | C09 | H5 | 36.1° | 60.0° |
C11 | C10 | H6 | H7 | 115.2° | 120.0° |
C10 | C11 | C24 | H17 | 0.8° | 0.0° |
C25 | C26 | O27 | O29 | 179.9° | 179.9° |
C25 | C26 | O27 | C28 | 133.5° | 180.0° |
C11 | C12 | C21 | C22 | 1.3° | 0.0° |
C12 | C11 | C24 | C23 | 1.0° | 0.5° |
C12 | C11 | C10 | H6 | 119.7° | 34.1° |
C12 | C11 | C10 | H7 | 2.6° | 154.1° |
C11 | C12 | C13 | H8 | 40.9° | 58.7° |
C11 | C12 | C13 | H9 | 78.0° | 61.4° |
C11 | C12 | C21 | H14 | 178.7° | 180.0° |
C12 | C11 | C24 | H17 | 179.0° | 179.7° |
C21 | C12 | C11 | C24 | 1.4° | 0.3° |
C12 | C21 | C22 | H14 | 180.0° | 180.0° |
C12 | C21 | C22 | C23 | 0.5° | 0.0° |
C21 | C12 | C13 | H8 | 137.7° | 121.3° |
C21 | C12 | C13 | H9 | 103.4° | 118.6° |
C12 | C21 | C22 | H15 | 179.5° | 179.9° |
C11 | C24 | C23 | H17 | 180.0° | 179.8° |
C11 | C24 | C23 | C22 | 0.2° | 0.5° |
C24 | C11 | C10 | H6 | 58.4° | 145.7° |
C24 | C11 | C10 | H7 | 175.5° | 25.7° |
C11 | C24 | C23 | H16 | 179.8° | 179.7° |
C26 | O27 | C28 | H18 | 180.0° | 60.0° |
C26 | O27 | C28 | H19 | 60.0° | 180.0° |
C26 | O27 | C28 | H20 | 60.0° | 60.0° |
O29 | C26 | O27 | C28 | 46.6° | 0.0° |
C21 | C22 | C23 | C24 | 0.0° | 0.2° |
C21 | C22 | C23 | H15 | 180.0° | 180.0° |
C21 | C22 | C23 | H16 | 180.0° | 180.0° |
O27 | C28 | H18 | H19 | 120.0° | 120.0° |
O27 | C28 | H18 | H20 | 120.0° | 120.1° |
O27 | C28 | H19 | H20 | 120.0° | 120.1° |
C24 | C23 | C22 | H16 | 180.0° | 179.8° |
C24 | C23 | C22 | H15 | 180.0° | 179.8° |
C23 | C22 | C21 | H14 | 179.4° | 180.0° |
C22 | C23 | C24 | H17 | 179.8° | 179.7° |
H4 | C09 | C10 | H6 | 155.9° | 180.0° |
H4 | C09 | C10 | H7 | 38.8° | 60.0° |
H5 | C09 | C10 | H6 | 85.4° | 60.0° |
H5 | C09 | C10 | H7 | 157.5° | 180.0° |
H10 | C15 | C16 | H11 | 0.7° | 0.0° |
H12 | C19 | C20 | H13 | 0.7° | 0.0° |
H14 | C21 | C22 | H15 | 0.6° | 0.0° |
H15 | C22 | C23 | H16 | 0.0° | 0.0° |
H16 | C23 | C24 | H17 | 0.2° | 0.1° |
H18 | C28 | H19 | H20 | 120.0° | 119.9° |