Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

VB5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C05C04sing1.53Å1.53Å
C05N06sing1.47Å1.32Å
C07N06sing1.47Å1.36Å
C07C08sing1.51Å1.58Å
C04C02sing1.53Å1.51Å
C01C02sing1.53Å1.54Å
N06C34sing1.47Å1.33Å
C08C09doub1.39Å1.41ÅAromatic
C08C11sing1.38Å1.39ÅAromatic
C02C03sing1.53Å1.55Å
C02C35sing1.53Å1.54Å
C09C10sing1.38Å1.40ÅAromatic
C34C35sing1.53Å1.58Å
C11C12doub1.39Å1.40ÅAromatic
C30N29sing1.47Å1.46Å
C10C14doub1.40Å1.39ÅAromatic
C12C14sing1.40Å1.40ÅAromatic
C12O13sing1.36Å1.39Å
C21C20sing1.53Å1.55Å
C21N23sing1.47Å1.48Å
C14C15sing1.48Å1.55Å
N29C28sing1.39Å1.47Å
C20C19sing1.53Å1.53Å
C31C28doub1.39Å1.37ÅAromatic
C31C24sing1.39Å1.38ÅAromatic
C19C18sing1.53Å1.53Å
C15O33doub1.22Å1.19Å
C15N16sing1.35Å1.47Å
N23C24sing1.39Å1.50Å
N23C22sing1.47Å1.49Å
C28N27sing1.33Å1.33ÅAromatic
C24N25doub1.33Å1.33ÅAromatic
N16C17sing1.46Å1.48Å
C22C18sing1.53Å1.54Å
C18C17sing1.53Å1.56Å
C18O32sing1.43Å1.39Å
N27C26doub1.32Å1.37ÅAromatic
N25C26sing1.32Å1.36ÅAromatic
C10H1sing1.08Å1.08Å
C17H2sing1.09Å1.10Å
C17H3sing1.09Å1.10Å
C20H4sing1.09Å1.10Å
C20H5sing1.09Å1.10Å
C21H6sing1.09Å1.10Å
C21H7sing1.09Å1.10Å
C22H8sing1.09Å1.10Å
C22H9sing1.09Å1.10Å
C26H10sing1.08Å1.08Å
C01H11sing1.09Å1.10Å
C01H12sing1.09Å1.10Å
C01H13sing1.09Å1.10Å
C03H14sing1.09Å1.10Å
C03H15sing1.09Å1.10Å
C03H16sing1.09Å1.10Å
C04H17sing1.09Å1.10Å
C04H18sing1.09Å1.10Å
C05H19sing1.09Å1.10Å
C05H20sing1.09Å1.10Å
C07H21sing1.09Å1.10Å
C07H22sing1.09Å1.10Å
C09H23sing1.08Å1.08Å
C11H24sing1.08Å1.08Å
C19H25sing1.09Å1.10Å
C19H26sing1.09Å1.10Å
C30H27sing1.09Å1.10Å
C30H28sing1.09Å1.10Å
C30H29sing1.09Å1.10Å
C31H30sing1.08Å1.08Å
C34H31sing1.09Å1.10Å
C34H32sing1.09Å1.10Å
C35H33sing1.09Å1.10Å
C35H34sing1.09Å1.10Å
N16H36sing0.97Å1.00Å
N29H37sing0.97Å1.00Å
O13H38sing0.97Å0.95Å
O32H39sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C04C05N06115.6°109.5°
C05C04C02110.1°109.2°
C05C04H17109.3°109.5°
C05C04H18109.3°109.5°
C04C05H19107.9°109.4°
C04C05H20107.9°109.5°
C05N06C07108.9°111.0°
C05N06C34113.6°111.2°
N06C05H19107.9°109.4°
N06C05H20107.9°109.5°
N06C07C08108.7°109.5°
C07N06C34110.7°111.0°
N06C07H21109.7°109.4°
N06C07H22109.7°109.4°
C07C08C09120.9°119.8°
C07C08C11119.0°119.8°
C08C07H21109.7°109.5°
C08C07H22109.7°109.5°
C04C02C01108.1°109.5°
C04C02C03112.2°109.5°
C04C02C35109.4°109.3°
C02C04H17109.3°109.5°
C02C04H18109.3°109.5°
C01C02C03109.5°109.5°
C01C02C35108.8°109.6°
C02C01H11109.5°109.5°
C02C01H12109.5°109.5°
C02C01H13109.5°109.5°
N06C34C35114.2°109.5°
N06C34H31108.3°109.4°
N06C34H32108.3°109.5°
C09C08C11120.1°120.3°
C08C09C10119.9°120.3°
C08C09H23120.1°119.8°
C08C11C12119.9°120.1°
C08C11H24120.1°119.9°
C03C02C35108.8°109.5°
C02C03H14109.5°109.5°
C02C03H15109.5°109.5°
C02C03H16109.5°109.4°
C02C35C34107.0°109.3°
C02C35H33110.1°109.5°
C02C35H34110.1°109.5°
C09C10C14119.7°119.9°
C09C10H1120.1°120.0°
C10C09H23120.1°119.9°
C35C34H31108.3°109.4°
C35C34H32108.3°109.5°
C34C35H33110.1°109.5°
C34C35H34110.1°109.5°
C11C12C14119.9°119.7°
C11C12O13118.9°120.2°
C12C11H24120.1°120.0°
C30N29C28119.1°120.0°
N29C30H27109.5°109.5°
N29C30H28109.5°109.5°
N29C30H29109.5°109.5°
C30N29H37107.0°120.0°
C10C14C12120.5°119.6°
C10C14C15117.5°120.2°
C14C10H1120.1°120.0°
C14C12O13121.2°120.2°
C12C14C15122.0°120.2°
C12O13H38109.5°113.9°
C20C21N23111.1°109.5°
C21C20C19110.1°109.3°
C21C20H4109.3°109.5°
C21C20H5109.3°109.5°
C20C21H6109.1°109.5°
C20C21H7109.0°109.4°
C21N23C24119.6°111.0°
C21N23C22121.9°111.2°
N23C21H6109.0°109.5°
N23C21H7109.1°109.4°
C14C15O33118.6°120.1°
C14C15N16121.8°120.0°
N29C28C31119.7°120.5°
N29C28N27119.9°120.5°
C28N29H37107.0°120.0°
C20C19C18111.0°109.1°
C19C20H4109.3°109.5°
C19C20H5109.3°109.5°
C20C19H25109.1°109.6°
C20C19H26109.1°109.6°
C28C31C24118.8°118.3°
C31C28N27120.4°119.0°
C28C31H30120.6°120.9°
C31C24N23120.4°120.5°
C31C24N25120.7°119.0°
C24C31H30120.6°120.9°
C19C18C22108.6°109.3°
C19C18C17110.6°109.5°
C19C18O32111.2°109.5°
C18C19H25109.1°109.5°
C18C19H26109.1°109.5°
O33C15N16119.6°120.0°
C15N16C17116.9°120.0°
C15N16H36121.6°120.0°
C24N23C22117.8°111.0°
N23C24N25118.9°120.5°
N23C22C18111.3°109.5°
N23C22H8109.0°109.5°
N23C22H9109.0°109.4°
C28N27C26120.0°120.9°
C24N25C26119.9°120.8°
N16C17C18109.2°109.5°
N16C17H2109.5°109.5°
N16C17H3109.6°109.5°
C17N16H36121.6°120.0°
C22C18C17106.6°109.5°
C22C18O32110.4°109.5°
C18C22H8109.0°109.5°
C18C22H9109.0°109.5°
C17C18O32109.3°109.4°
C18C17H2109.5°109.5°
C18C17H3109.5°109.5°
C18O32H39109.5°114.0°
N27C26N25120.3°121.9°
N27C26H10119.8°119.0°
N25C26H10119.9°119.0°
H2C17H3109.5°109.5°
H4C20H5109.5°109.5°
H6C21H7109.5°109.5°
H8C22H9109.5°109.5°
H11C01H12109.5°109.4°
H11C01H13109.5°109.5°
H12C01H13109.5°109.5°
H14C03H15109.5°109.5°
H14C03H16109.5°109.5°
H15C03H16109.5°109.5°
H17C04H18109.4°109.6°
H19C05H20109.5°109.5°
H21C07H22109.5°109.4°
H25C19H26109.5°109.6°
H27C30H28109.5°109.5°
H27C30H29109.5°109.5°
H28C30H29109.5°109.4°
H31C34H32109.5°109.5°
H33C35H34109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C04C05N06H19120.9°119.9°
C04C05N06H20120.9°120.1°
C04C05N06C07179.5°174.1°
C05C04C02H17120.1°119.9°
C05C04C02H18120.1°119.9°
C05C04C02C0168.0°62.3°
C04C05N06C3456.7°61.7°
C05C04C02C03171.2°177.6°
C05C04C02C3550.3°57.7°
C05C04H17H18119.7°120.1°
C04C05H19H20117.2°120.0°
C05N06C07C34125.6°124.2°
C05N06C07C08173.4°170.0°
N06C05C04C0252.5°59.2°
C05N06C34C3558.8°61.7°
N06C05C04H17172.6°60.7°
N06C05C04H1867.6°179.2°
N06C05H19H20117.2°120.0°
C05N06C07H2153.6°69.9°
C05N06C07H2266.7°50.0°
C05N06C34H31179.5°58.3°
C05N06C34H3261.8°178.3°
N06C07C08H21119.9°120.0°
N06C07C08H22119.9°120.0°
N06C07C08C09101.6°90.0°
N06C07C08C1177.1°90.0°
C07N06C34C35178.3°174.2°
C07N06C05H1958.6°54.2°
C07N06C05H2059.6°65.8°
N06C07H21H22120.4°119.9°
C07N06C34H3157.6°65.9°
C07N06C34H3261.0°54.1°
C08C07N06C3461.0°65.7°
C07C08C09C11178.7°180.0°
C07C08C09C10178.4°179.9°
C07C08C11C12179.0°179.7°
C08C07H21H22120.4°120.0°
C07C08C09H231.6°0.0°
C07C08C11H241.0°0.0°
C04C02C01C03122.5°120.1°
C04C02C01C35118.6°119.8°
C04C02C03C35121.2°119.7°
C04C02C35C3451.2°57.7°
C04C02C01H11180.0°179.9°
C04C02C01H1260.0°60.0°
C04C02C01H1360.0°60.1°
C04C02C03H14180.0°60.2°
C04C02C03H1560.0°59.9°
C04C02C03H1660.0°179.9°
C02C04H17H18119.7°120.1°
C02C04C05H19173.4°179.1°
C02C04C05H2068.4°60.8°
C04C02C35H33170.8°177.7°
C04C02C35H3468.4°62.2°
C01C02C03C35118.8°120.2°
C01C02C35C3466.6°62.3°
C02C01H11H12120.0°119.9°
C02C01H11H13120.0°120.1°
C02C01H12H13120.0°120.1°
C01C02C03H1460.0°59.9°
C01C02C03H1560.0°180.0°
C01C02C03H16180.0°60.0°
C01C02C04H1752.2°177.8°
C01C02C04H18171.9°57.6°
C01C02C35H3353.0°57.7°
C01C02C35H34173.8°177.8°
N06C34C35C0256.2°59.1°
N06C34C35H31120.7°119.9°
N06C34C35H32120.7°120.1°
C34N06C05H19177.6°178.3°
C34N06C05H2064.2°58.3°
C34N06C07H21179.2°54.3°
C34N06C07H2258.9°174.2°
N06C34H31H32117.9°120.0°
N06C34C35H33175.9°179.1°
N06C34C35H3463.4°60.8°
C08C09C10H23180.0°179.9°
C09C08C11C120.3°0.3°
C08C09C10C140.7°0.1°
C08C09C10H1179.3°179.7°
C09C08C07H21138.5°150.0°
C09C08C07H2218.3°30.0°
C09C08C11H24179.7°180.0°
C11C08C09C100.4°0.1°
C08C11C12H24180.0°179.7°
C08C11C12C140.6°0.5°
C08C11C12O13180.0°179.9°
C11C08C07H2142.7°30.0°
C11C08C07H22163.0°150.0°
C11C08C09H23179.6°180.0°
C03C02C35C34174.2°177.6°
C03C02C01H1157.4°60.1°
C03C02C01H12177.5°180.0°
C03C02C01H1362.6°60.0°
C02C03H14H15120.0°120.0°
C02C03H14H16120.0°119.9°
C02C03H15H16120.0°120.0°
C03C02C04H1768.7°57.7°
C03C02C04H1851.1°62.5°
C03C02C35H3366.2°62.5°
C03C02C35H3454.6°57.7°
C02C35C34H33119.6°120.0°
C02C35C34H34119.6°119.9°
C35C02C01H1161.4°60.1°
C35C02C01H1258.6°59.8°
C35C02C01H13178.6°179.9°
C35C02C03H1458.8°179.9°
C35C02C03H15178.8°59.9°
C35C02C03H1661.2°60.1°
C35C02C04H17170.4°62.2°
C35C02C04H1869.8°177.7°
C02C35C34H31176.9°60.8°
C02C35C34H3264.4°179.2°
C02C35H33H34121.2°120.1°
C09C10C14H1180.0°179.7°
C09C10C14C120.5°0.3°
C09C10C14C15179.8°179.7°
C35C34H31H32117.8°120.0°
C34C35H33H34121.1°120.1°
C11C12C14C100.2°0.5°
C11C12C14O13179.5°179.5°
C11C12C14C15179.6°179.5°
C11C12O13H38180.0°90.0°
C30N29C28H37121.3°179.9°
C30N29C28C3116.8°0.1°
C30N29C28N27163.6°180.0°
N29C30H27H28120.0°120.0°
N29C30H27H29120.0°120.0°
N29C30H28H29120.0°120.0°
C10C14C12C15179.7°180.0°
C10C14C12O13179.6°180.0°
C10C14C15O335.3°180.0°
C10C14C15N16173.6°0.0°
C14C10C09H23179.3°180.0°
C12C14C15O33175.0°0.0°
C12C14C15N166.2°180.0°
C12C14C10H1179.5°179.9°
C14C12C11H24179.5°179.8°
C14C12O13H380.5°89.5°
O13C12C14C150.1°0.0°
O13C12C11H240.0°0.3°
C20C21N23H6120.3°120.1°
C20C21N23H7120.2°120.0°
C21C20C19H4120.1°119.9°
C21C20C19H5120.1°120.0°
C21C20C19C1861.8°57.6°
C20C21N23C24129.8°174.2°
C20C21N23C2239.9°61.7°
C21C20H4H5119.7°120.1°
C20C21H6H7119.2°120.0°
C21C20C19H25178.0°62.2°
C21C20C19H2658.4°177.5°
N23C21C20C1947.0°59.2°
C21N23C24C3122.3°56.3°
C21N23C24C22170.1°124.2°
C21N23C24N25158.3°124.0°
C21N23C22C1841.9°61.7°
N23C21C20H473.0°179.1°
N23C21C20H5167.1°60.8°
N23C21H6H7119.2°120.0°
C21N23C22H878.4°58.3°
C21N23C22H9162.2°178.3°
C14C15O33N16178.9°180.0°
C14C15N16C17179.6°180.0°
C15C14C10H10.2°0.0°
C14C15N16H360.3°0.0°
N29C28C31N27179.7°179.9°
N29C28C31C24179.8°179.9°
N29C28N27C26179.6°180.0°
C28N29C30H27180.0°59.9°
C28N29C30H2860.0°60.1°
C28N29C30H2960.0°179.9°
N29C28C31H300.3°0.1°
C20C19C18H25120.2°119.9°
C20C19C18H26120.2°119.9°
C20C19C18C2263.1°57.7°
C20C19C18C17179.8°62.3°
C20C19C18O3258.6°177.7°
C19C20H4H5119.7°120.1°
C19C20C21H673.2°179.2°
C19C20C21H7167.3°60.8°
C20C19H25H26119.3°120.3°
C28C31C24H30180.0°180.0°
C28C31C24N23179.8°179.7°
C28C31C24N250.3°0.0°
C31C28N27C260.7°0.0°
C31C28N29H37104.6°180.0°
C31C24N23N25179.4°179.7°
C31C24N23C22167.6°179.5°
C24C31C28N270.6°0.0°
C31C24N25C260.3°0.0°
C19C18C22N2350.4°59.2°
C19C18C17N1660.4°55.2°
C19C18C22C17119.2°120.0°
C19C18C22O32122.2°120.0°
C19C18C17O32122.8°120.1°
C19C18C17H259.5°64.8°
C19C18C17H3179.6°175.2°
C18C19C20H458.3°177.6°
C18C19C20H5178.1°62.4°
C19C18C22H869.9°60.8°
C19C18C22H9170.6°179.2°
C18C19H25H26119.3°120.1°
C19C18O32H39180.0°60.1°
O33C15N16C170.8°0.0°
O33C15N16H36179.2°180.0°
C15N16C17H36180.0°180.0°
C15N16C17C1899.5°180.0°
C15N16C17H220.4°60.0°
C15N16C17H3140.5°60.0°
C24N23C22C18127.9°174.2°
N23C24N25C26179.7°179.7°
C24N23C21H6110.0°54.1°
C24N23C21H79.6°65.9°
C24N23C22H8111.8°65.8°
C24N23C22H97.7°54.2°
N23C24C31H300.2°0.2°
C22N23C24N2511.8°0.2°
N23C22C18H8120.3°120.0°
N23C22C18H9120.3°120.0°
N23C22C18C17169.6°60.8°
N23C22C18O3271.8°179.2°
C22N23C21H680.4°178.2°
C22N23C21H7160.1°58.2°
N23C22H8H9119.2°120.0°
C28N27C26N250.6°0.0°
C28N27C26H10179.4°180.0°
N27C28C31H30179.4°180.0°
N27C28N29H3775.1°0.1°
C24N25C26N270.4°0.0°
C24N25C26H10179.6°180.0°
N25C24C31H30179.6°180.0°
N16C17C18C2257.5°175.0°
N16C17C18H2119.9°120.0°
N16C17C18H3120.0°120.0°
N16C17C18O32176.8°64.9°
N16C17H2H3120.2°120.0°
C22C18C17O32119.3°120.1°
C22C18C17H2177.4°55.0°
C22C18C17H362.5°65.0°
C18C22H8H9119.2°120.0°
C22C18C19H25176.7°62.3°
C22C18C19H2657.2°177.6°
C22C18O32H3959.4°180.0°
C18C17H2H3120.1°120.0°
C17C18C22H849.3°179.2°
C17C18C22H970.1°59.2°
C17C18C19H2560.0°177.7°
C17C18C19H2659.5°57.6°
C18C17N16H3680.5°0.1°
C17C18O32H3957.6°59.9°
O32C18C17H263.2°175.1°
O32C18C17H356.9°55.1°
O32C18C22H8167.9°59.1°
O32C18C22H948.5°60.8°
O32C18C19H2561.6°57.7°
O32C18C19H26178.8°62.4°
N27C26N25H10180.0°179.9°
H1C10C09H230.7°0.4°
H2C17N16H36159.6°120.0°
H3C17N16H3639.5°120.0°
H4C20C21H6166.7°60.9°
H4C20C21H747.2°59.1°
H4C20C19H2561.9°57.7°
H4C20C19H26178.5°62.6°
H5C20C21H646.9°59.2°
H5C20C21H772.6°179.2°
H5C20C19H2557.9°177.8°
H5C20C19H2661.7°57.5°
H11C01H12H13120.0°120.0°
H14C03H15H16120.0°120.0°
H17C04C05H1966.5°59.2°
H17C04C05H2051.8°179.2°
H18C04C05H1953.3°60.9°
H18C04C05H20171.6°59.1°
H27C30H28H29120.0°120.0°
H27C30N29H3758.6°120.0°
H28C30N29H3761.4°120.0°
H29C30N29H37178.6°0.0°
H31C34C35H3363.4°59.2°
H31C34C35H3457.3°179.3°
H32C34C35H3355.2°60.9°
H32C34C35H34176.0°59.2°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon