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VAO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1Ctrip1.14Å1.16Å
CC1sing1.43Å1.43Å
C1C6sing1.40Å1.38ÅAromatic
C1C2doub1.40Å1.40ÅAromatic
C6C5doub1.39Å1.38ÅAromatic
C5C4sing1.40Å1.42ÅAromatic
C5C7sing1.48Å1.46Å
C4O2sing1.36Å1.35Å
C4C3doub1.39Å1.41ÅAromatic
C3C2sing1.38Å1.39ÅAromatic
C7Ndoub1.33Å1.36ÅAromatic
C7C8sing1.39Å1.41ÅAromatic
NC11sing1.32Å1.33ÅAromatic
C11C10doub1.38Å1.41ÅAromatic
C10C9sing1.40Å1.40ÅAromatic
C9C8doub1.40Å1.38ÅAromatic
C9C12sing1.48Å1.47Å
C12O1doub1.21Å1.22Å
C12Osing1.35Å1.37Å
C6H6sing1.08Å1.08Å
C2H2sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
C11H11sing1.08Å1.08Å
C10H10sing1.08Å1.08Å
OHsing0.97Å0.95Å
O2H21sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1CC1177.4°180.0°
CC1C6117.0°120.0°
CC1C2121.7°120.0°
C6C1C2121.2°119.9°
C1C6C5120.0°119.8°
C1C6H6120.0°120.1°
C1C2C3119.7°120.1°
C1C2H2120.1°119.9°
C6C5C4119.5°119.8°
C6C5C7115.2°120.0°
C5C6H6120.0°120.1°
C4C5C7125.1°120.1°
C5C4O2117.9°120.0°
C5C4C3120.3°120.1°
C5C7N119.3°119.7°
C5C7C8117.1°119.7°
O2C4C3121.8°120.0°
C4O2H21109.5°114.0°
C4C3C2119.1°120.3°
C4C3H3120.5°119.9°
C3C2H2120.2°119.9°
C2C3H3120.4°119.8°
NC7C8123.6°120.6°
C7NC11116.7°122.0°
C7C8C9117.8°118.9°
C7C8H8121.1°120.5°
NC11C10124.4°121.0°
NC11H11117.8°119.5°
C11C10C9117.2°119.2°
C10C11H11117.8°119.5°
C11C10H10121.4°120.4°
C10C9C8120.4°118.3°
C10C9C12121.7°120.9°
C9C10H10121.4°120.4°
C8C9C12118.0°120.9°
C9C8H8121.1°120.6°
C9C12O1124.1°120.0°
C9C12O118.9°120.0°
O1C12O117.1°120.0°
C12OH109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1CC1C66.0°168.8°
N1CC1C2170.1°11.0°
CC1C6C2176.1°179.8°
CC1C6C5174.8°180.0°
CC1C2C3172.8°179.8°
CC1C6H65.2°0.0°
CC1C2H27.3°0.0°
C1C6C5H6180.0°180.0°
C1C6C5C42.1°0.0°
C1C6C5C7173.0°180.0°
C6C1C2C33.2°0.5°
C6C1C2H2176.8°179.8°
C2C1C6C51.4°0.2°
C1C2C3C41.5°0.5°
C1C2C3H2180.0°179.7°
C2C1C6H6178.6°179.8°
C1C2C3H3178.5°179.7°
C6C5C4C7174.5°180.0°
C6C5C4O2174.1°180.0°
C6C5C4C33.7°0.0°
C6C5C7N143.0°180.0°
C6C5C7C837.0°0.3°
C5C4O2C3177.8°180.0°
C5C4C3C21.9°0.2°
C4C5C7N42.3°0.1°
C4C5C7C8137.7°179.7°
C4C5C6H6177.9°180.0°
C5C4C3H3178.1°179.9°
C5C4O2H21180.0°90.0°
C7C5C4O211.3°0.0°
C7C5C4C3170.8°180.0°
C5C7NC8180.0°179.7°
C5C7NC11179.8°180.0°
C5C7C8C9179.9°179.8°
C7C5C6H67.0°0.0°
C5C7C8H80.0°0.0°
O2C4C3C2175.9°179.7°
O2C4C3H34.1°0.1°
C4C3C2H3180.0°179.8°
C4C3C2H2178.5°179.8°
C3C4O2H212.2°90.0°
C7NC11C100.1°0.0°
NC7C8C90.0°0.6°
NC7C8H8180.0°179.7°
C7NC11H11179.9°180.0°
C8C7NC110.2°0.3°
C7C8C9C100.2°0.5°
C7C8C9H8180.0°179.7°
C7C8C9C12179.9°179.7°
NC11C10H11180.0°180.0°
NC11C10C90.1°0.0°
NC11C10H10179.9°179.9°
C11C10C9H10180.0°179.9°
C11C10C9C80.3°0.3°
C11C10C9C12179.8°180.0°
C10C9C8C12180.0°179.7°
C10C9C12O1142.8°180.0°
C10C9C12O38.2°0.1°
C10C9C8H8179.8°179.7°
C9C10C11H11179.9°180.0°
C8C9C12O137.2°0.3°
C8C9C12O141.8°179.8°
C8C9C10H10179.8°179.8°
C9C12O1O179.1°180.0°
C12C9C8H80.2°0.0°
C12C9C10H100.2°0.1°
C9C12OH179.1°180.0°
O1C12OH0.0°0.1°
H2C2C3H31.5°0.0°
H11C11C10H100.1°0.1°

246905

PDB entries from 2025-12-31

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