VA7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C2 | N1 | doub | 1.32Å | 1.33Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.31Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.36Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.37Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.45Å | |
| C6 | C5 | doub | 1.41Å | 1.42Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.41Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
| C2' | C1' | sing | 1.55Å | 1.27Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| C1' | N9 | sing | 1.47Å | 1.44Å | |
| C1' | O4' | sing | 1.44Å | 1.61Å | |
| C5 | N7 | sing | 1.35Å | 1.37Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| O3' | C3' | sing | 1.43Å | 1.38Å | |
| C3' | C4' | sing | 1.55Å | 1.55Å | |
| O4' | C4' | sing | 1.44Å | 1.25Å | |
| N7 | C8 | doub | 1.30Å | 1.35Å | Aromatic |
| C4' | C5' | sing | 1.53Å | 1.56Å | |
| O2B | PB | doub | 1.48Å | 1.50Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| O5' | PA | sing | 1.61Å | 1.58Å | |
| O3A | PB | sing | 1.61Å | 1.57Å | |
| O3A | PA | sing | 1.61Å | 1.60Å | |
| PB | O1B | sing | 1.61Å | 1.51Å | |
| PB | C3B | sing | 1.82Å | 1.82Å | |
| CL1 | C3B | sing | 1.80Å | 1.76Å | |
| PA | O2A | doub | 1.48Å | 1.52Å | |
| PA | O1A | sing | 1.61Å | 1.52Å | |
| C3B | CL2 | sing | 1.80Å | 1.74Å | |
| C3B | PG | sing | 1.82Å | 1.82Å | |
| O3G | PG | doub | 1.48Å | 1.53Å | |
| PG | O2G | sing | 1.61Å | 1.51Å | |
| PG | O1G | sing | 1.61Å | 1.52Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| N6 | H2 | sing | 0.97Å | 1.00Å | |
| N6 | H3 | sing | 0.97Å | 1.00Å | |
| C8 | H4 | sing | 1.08Å | 1.08Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| O1A | H6 | sing | 0.97Å | 0.95Å | |
| O1G | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O1B | H10 | sing | 0.97Å | 0.95Å | |
| O2G | H11 | sing | 0.97Å | 0.95Å | |
| C3' | H12 | sing | 1.09Å | 1.10Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| C4' | H14 | sing | 1.09Å | 1.10Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| C5' | H16 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N1 | C2 | N3 | 121.5° | 122.4° |
| C2 | N1 | C6 | 122.1° | 121.2° |
| N1 | C2 | H1 | 119.3° | 118.8° |
| C2 | N3 | C4 | 120.4° | 120.6° |
| N3 | C2 | H1 | 119.2° | 118.8° |
| N1 | C6 | N6 | 119.9° | 120.8° |
| N1 | C6 | C5 | 119.0° | 118.4° |
| N3 | C4 | C5 | 121.2° | 119.1° |
| N3 | C4 | N9 | 132.8° | 134.9° |
| N6 | C6 | C5 | 121.1° | 120.8° |
| C6 | N6 | H2 | 109.5° | 120.0° |
| C6 | N6 | H3 | 109.5° | 120.0° |
| C6 | C5 | C4 | 115.8° | 118.2° |
| C6 | C5 | N7 | 137.4° | 134.7° |
| C5 | C4 | N9 | 105.9° | 106.0° |
| C4 | C5 | N7 | 106.8° | 107.2° |
| C4 | N9 | C1' | 123.1° | 126.3° |
| C4 | N9 | C8 | 109.8° | 107.5° |
| C1' | C2' | C3' | 104.6° | 104.1° |
| C2' | C1' | N9 | 108.9° | 110.3° |
| C2' | C1' | O4' | 107.2° | 104.8° |
| C2' | C1' | H5 | 112.9° | 110.5° |
| C1' | C2' | H8 | 110.7° | 110.5° |
| C1' | C2' | H9 | 110.7° | 110.5° |
| C2' | C3' | O3' | 111.6° | 110.5° |
| C2' | C3' | C4' | 100.3° | 104.1° |
| C3' | C2' | H8 | 110.7° | 110.5° |
| C3' | C2' | H9 | 110.7° | 110.5° |
| C2' | C3' | H12 | 109.7° | 110.5° |
| N9 | C1' | O4' | 109.7° | 110.4° |
| C1' | N9 | C8 | 127.1° | 126.3° |
| N9 | C1' | H5 | 110.1° | 110.3° |
| C1' | O4' | C4' | 106.3° | 105.3° |
| O4' | C1' | H5 | 107.9° | 110.4° |
| C5 | N7 | C8 | 108.7° | 109.4° |
| N9 | C8 | N7 | 108.7° | 109.9° |
| N9 | C8 | H4 | 125.7° | 125.1° |
| O3' | C3' | C4' | 114.2° | 110.5° |
| O3' | C3' | H12 | 111.4° | 110.6° |
| C3' | O3' | H13 | 109.5° | 114.0° |
| C3' | C4' | O4' | 103.2° | 104.8° |
| C3' | C4' | C5' | 113.2° | 110.4° |
| C4' | C3' | H12 | 109.0° | 110.5° |
| C3' | C4' | H14 | 108.9° | 110.4° |
| O4' | C4' | C5' | 109.1° | 110.3° |
| O4' | C4' | H14 | 113.7° | 110.4° |
| N7 | C8 | H4 | 125.7° | 125.0° |
| C4' | C5' | O5' | 106.1° | 109.5° |
| C5' | C4' | H14 | 108.7° | 110.3° |
| C4' | C5' | H15 | 110.3° | 109.4° |
| C4' | C5' | H16 | 110.3° | 109.5° |
| O2B | PB | O3A | 107.8° | 109.5° |
| O2B | PB | O1B | 109.6° | 109.5° |
| O2B | PB | C3B | 110.2° | 109.4° |
| C5' | O5' | PA | 117.4° | 123.0° |
| O5' | C5' | H15 | 110.3° | 109.5° |
| O5' | C5' | H16 | 110.3° | 109.5° |
| O5' | PA | O3A | 104.9° | 109.5° |
| O5' | PA | O2A | 110.4° | 109.5° |
| O5' | PA | O1A | 108.7° | 109.5° |
| PB | O3A | PA | 128.3° | 134.0° |
| O3A | PB | O1B | 111.4° | 109.5° |
| O3A | PB | C3B | 109.3° | 109.5° |
| O3A | PA | O2A | 109.3° | 109.5° |
| O3A | PA | O1A | 114.2° | 109.5° |
| O1B | PB | C3B | 108.6° | 109.4° |
| PB | O1B | H10 | 109.5° | 114.0° |
| PB | C3B | CL1 | 112.3° | 109.4° |
| PB | C3B | CL2 | 109.9° | 109.4° |
| PB | C3B | PG | 111.3° | 109.5° |
| CL1 | C3B | CL2 | 113.2° | 109.5° |
| CL1 | C3B | PG | 105.3° | 109.5° |
| O2A | PA | O1A | 109.3° | 109.5° |
| PA | O1A | H6 | 109.5° | 114.0° |
| CL2 | C3B | PG | 104.4° | 109.5° |
| C3B | PG | O3G | 112.9° | 109.5° |
| C3B | PG | O2G | 103.3° | 109.5° |
| C3B | PG | O1G | 106.4° | 109.5° |
| O3G | PG | O2G | 108.6° | 109.5° |
| O3G | PG | O1G | 111.7° | 109.4° |
| O2G | PG | O1G | 113.8° | 109.5° |
| PG | O2G | H11 | 109.5° | 114.0° |
| PG | O1G | H7 | 109.5° | 114.0° |
| H2 | N6 | H3 | 109.5° | 120.0° |
| H8 | C2' | H9 | 109.5° | 110.5° |
| H15 | C5' | H16 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N1 | C2 | N3 | H1 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.5° | 0.1° |
| N3 | C2 | N1 | C6 | 0.2° | 0.0° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| C2 | N3 | C4 | N9 | 179.6° | 180.0° |
| N1 | C6 | N6 | C5 | 179.5° | 179.9° |
| N1 | C6 | C5 | C4 | 0.5° | 0.0° |
| N1 | C6 | C5 | N7 | 179.6° | 179.9° |
| C6 | N1 | C2 | H1 | 179.8° | 180.0° |
| N1 | C6 | N6 | H2 | 0.0° | 0.1° |
| N1 | C6 | N6 | H3 | 120.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.3° | 0.0° |
| N3 | C4 | C5 | N9 | 179.7° | 180.0° |
| N3 | C4 | N9 | C1' | 1.0° | 0.1° |
| N3 | C4 | C5 | N7 | 179.8° | 180.0° |
| N3 | C4 | N9 | C8 | 179.6° | 180.0° |
| C4 | N3 | C2 | H1 | 179.9° | 180.0° |
| N6 | C6 | C5 | C4 | 180.0° | 180.0° |
| N6 | C6 | C5 | N7 | 0.2° | 0.0° |
| C6 | N6 | H2 | H3 | 120.0° | 179.9° |
| C6 | C5 | C4 | N7 | 179.9° | 180.0° |
| C6 | C5 | C4 | N9 | 180.0° | 180.0° |
| C6 | C5 | N7 | C8 | 180.0° | 180.0° |
| C5 | C6 | N6 | H2 | 179.5° | 180.0° |
| C5 | C6 | N6 | H3 | 59.5° | 0.1° |
| C5 | C4 | N9 | C1' | 179.4° | 179.9° |
| C5 | C4 | N9 | C8 | 0.0° | 0.0° |
| C4 | C5 | N7 | C8 | 0.2° | 0.1° |
| C4 | N9 | C1' | C2' | 88.7° | 88.2° |
| C4 | N9 | C1' | C8 | 179.3° | 179.9° |
| C4 | N9 | C1' | O4' | 154.2° | 156.5° |
| N9 | C4 | C5 | N7 | 0.1° | 0.0° |
| C4 | N9 | C8 | N7 | 0.1° | 0.0° |
| C4 | N9 | C8 | H4 | 179.9° | 180.0° |
| C4 | N9 | C1' | H5 | 35.6° | 34.1° |
| C1' | C2' | C3' | H8 | 119.2° | 118.6° |
| C1' | C2' | C3' | H9 | 119.2° | 118.6° |
| C2' | C1' | N9 | O4' | 117.1° | 115.3° |
| C2' | C1' | N9 | H5 | 124.3° | 122.4° |
| C2' | C1' | O4' | H5 | 121.9° | 119.0° |
| C2' | C1' | N9 | C8 | 90.6° | 91.9° |
| C1' | C2' | C3' | O3' | 159.8° | 118.6° |
| C1' | C2' | C3' | C4' | 38.4° | 0.0° |
| C2' | C1' | O4' | C4' | 5.3° | 40.5° |
| C1' | C2' | H8 | H9 | 122.2° | 122.6° |
| C1' | C2' | C3' | H12 | 76.2° | 118.6° |
| C3' | C2' | C1' | N9 | 96.4° | 142.8° |
| C3' | C2' | C1' | O4' | 22.3° | 24.0° |
| C2' | C3' | O3' | C4' | 113.0° | 114.6° |
| C2' | C3' | O3' | H12 | 123.0° | 122.7° |
| C2' | C3' | C4' | H12 | 115.1° | 118.6° |
| C2' | C3' | C4' | O4' | 42.1° | 24.0° |
| C2' | C3' | C4' | C5' | 159.9° | 142.8° |
| C3' | C2' | C1' | H5 | 141.0° | 94.9° |
| C3' | C2' | H8 | H9 | 122.3° | 122.7° |
| C2' | C3' | O3' | H13 | 148.2° | 61.4° |
| C2' | C3' | C4' | H14 | 79.1° | 94.9° |
| N9 | C1' | O4' | H5 | 119.9° | 122.3° |
| N9 | C1' | O4' | C4' | 123.5° | 159.3° |
| C1' | N9 | C8 | N7 | 179.2° | 180.0° |
| C1' | N9 | C8 | H4 | 0.7° | 0.1° |
| N9 | C1' | C2' | H8 | 144.4° | 98.5° |
| N9 | C1' | C2' | H9 | 22.9° | 24.1° |
| O4' | C1' | N9 | C8 | 26.5° | 23.4° |
| C1' | O4' | C4' | C3' | 28.9° | 40.5° |
| C1' | O4' | C4' | C5' | 149.5° | 159.4° |
| O4' | C1' | C2' | H8 | 97.0° | 142.7° |
| O4' | C1' | C2' | H9 | 141.5° | 94.7° |
| C1' | O4' | C4' | H14 | 89.0° | 78.3° |
| C5 | N7 | C8 | N9 | 0.2° | 0.1° |
| C5 | N7 | C8 | H4 | 179.8° | 180.0° |
| N9 | C8 | N7 | H4 | 180.0° | 180.0° |
| C8 | N9 | C1' | H5 | 145.1° | 145.8° |
| O3' | C3' | C4' | H12 | 125.3° | 122.7° |
| O3' | C3' | C4' | O4' | 161.6° | 142.6° |
| O3' | C3' | C4' | C5' | 80.6° | 98.5° |
| O3' | C3' | C2' | H8 | 40.6° | 0.0° |
| O3' | C3' | C2' | H9 | 81.0° | 122.7° |
| O3' | C3' | C4' | H14 | 40.4° | 23.7° |
| C3' | C4' | O4' | C5' | 120.6° | 118.9° |
| C3' | C4' | O4' | H14 | 117.9° | 118.9° |
| C3' | C4' | C5' | H14 | 121.2° | 122.3° |
| C3' | C4' | C5' | O5' | 56.2° | 175.0° |
| C4' | C3' | C2' | H8 | 80.8° | 118.7° |
| C4' | C3' | C2' | H9 | 157.6° | 118.6° |
| C4' | C3' | O3' | H13 | 98.8° | 176.1° |
| C3' | C4' | C5' | H15 | 175.7° | 55.0° |
| C3' | C4' | C5' | H16 | 63.3° | 64.9° |
| O4' | C4' | C5' | H14 | 124.5° | 122.3° |
| O4' | C4' | C5' | O5' | 58.1° | 69.6° |
| C4' | O4' | C1' | H5 | 116.6° | 78.4° |
| O4' | C4' | C3' | H12 | 73.1° | 94.6° |
| O4' | C4' | C5' | H15 | 61.4° | 170.4° |
| O4' | C4' | C5' | H16 | 177.5° | 50.4° |
| C4' | C5' | O5' | H15 | 119.4° | 120.0° |
| C4' | C5' | O5' | H16 | 119.5° | 120.0° |
| C4' | C5' | O5' | PA | 129.4° | 180.0° |
| C5' | C4' | C3' | H12 | 44.7° | 24.2° |
| C4' | C5' | H15 | H16 | 121.6° | 119.9° |
| O2B | PB | O3A | O1B | 120.2° | 120.0° |
| O2B | PB | O3A | C3B | 119.7° | 120.0° |
| O2B | PB | O3A | PA | 153.0° | 60.0° |
| O2B | PB | O1B | C3B | 120.4° | 120.0° |
| O2B | PB | C3B | CL1 | 7.9° | 60.0° |
| O2B | PB | C3B | CL2 | 119.2° | 180.0° |
| O2B | PB | C3B | PG | 125.7° | 60.0° |
| O2B | PB | O1B | H10 | 0.0° | 180.0° |
| C5' | O5' | PA | O3A | 67.1° | 175.0° |
| C5' | O5' | PA | O2A | 175.3° | 55.0° |
| C5' | O5' | PA | O1A | 55.5° | 65.0° |
| O5' | C5' | C4' | H14 | 177.4° | 52.7° |
| O5' | C5' | H15 | H16 | 121.6° | 120.0° |
| O5' | PA | O3A | PB | 120.7° | 165.0° |
| O5' | PA | O3A | O2A | 118.4° | 120.0° |
| O5' | PA | O3A | O1A | 118.9° | 120.0° |
| O5' | PA | O2A | O1A | 119.5° | 120.0° |
| O5' | PA | O1A | H6 | 120.6° | 60.0° |
| PA | O5' | C5' | H15 | 111.1° | 60.0° |
| PA | O5' | C5' | H16 | 9.9° | 60.0° |
| O3A | PB | O1B | C3B | 120.4° | 120.0° |
| O3A | PB | C3B | CL1 | 126.2° | 60.0° |
| PB | O3A | PA | O2A | 120.9° | 45.0° |
| PB | O3A | PA | O1A | 1.8° | 75.0° |
| O3A | PB | C3B | CL2 | 0.9° | 60.0° |
| O3A | PB | C3B | PG | 116.1° | 180.0° |
| O3A | PB | O1B | H10 | 119.2° | 59.9° |
| PA | O3A | PB | O1B | 32.7° | 60.0° |
| PA | O3A | PB | C3B | 87.3° | 180.0° |
| O3A | PA | O2A | O1A | 125.7° | 120.0° |
| O3A | PA | O1A | H6 | 122.7° | 60.0° |
| O1B | PB | C3B | CL1 | 112.2° | 180.0° |
| O1B | PB | C3B | CL2 | 120.8° | 60.0° |
| O1B | PB | C3B | PG | 5.6° | 60.0° |
| PB | C3B | CL1 | CL2 | 125.3° | 120.0° |
| PB | C3B | CL1 | PG | 121.3° | 120.0° |
| PB | C3B | CL2 | PG | 119.5° | 120.0° |
| PB | C3B | PG | O3G | 43.3° | 60.0° |
| PB | C3B | PG | O2G | 160.4° | 180.0° |
| PB | C3B | PG | O1G | 79.5° | 60.0° |
| C3B | PB | O1B | H10 | 120.4° | 60.0° |
| CL1 | C3B | CL2 | PG | 114.0° | 120.0° |
| CL1 | C3B | PG | O3G | 78.6° | 179.9° |
| CL1 | C3B | PG | O2G | 38.4° | 60.1° |
| CL1 | C3B | PG | O1G | 158.6° | 60.0° |
| O2A | PA | O1A | H6 | 0.0° | 180.0° |
| CL2 | C3B | PG | O3G | 161.9° | 60.0° |
| CL2 | C3B | PG | O2G | 81.0° | 60.0° |
| CL2 | C3B | PG | O1G | 39.1° | 180.0° |
| C3B | PG | O3G | O2G | 113.9° | 120.0° |
| C3B | PG | O3G | O1G | 119.8° | 120.0° |
| C3B | PG | O2G | O1G | 114.9° | 120.0° |
| C3B | PG | O1G | H7 | 123.5° | 60.0° |
| C3B | PG | O2G | H11 | 120.0° | 180.0° |
| O3G | PG | O2G | O1G | 125.0° | 120.0° |
| O3G | PG | O1G | H7 | 0.0° | 180.0° |
| O3G | PG | O2G | H11 | 0.0° | 60.0° |
| O2G | PG | O1G | H7 | 123.4° | 60.0° |
| O1G | PG | O2G | H11 | 125.1° | 59.9° |
| H5 | C1' | C2' | H8 | 21.8° | 23.7° |
| H5 | C1' | C2' | H9 | 99.8° | 146.4° |
| H8 | C2' | C3' | H12 | 164.6° | 122.7° |
| H9 | C2' | C3' | H12 | 43.0° | 0.0° |
| H12 | C3' | O3' | H13 | 25.2° | 61.3° |
| H12 | C3' | C4' | H14 | 165.8° | 146.4° |
| H14 | C4' | C5' | H15 | 63.1° | 67.3° |
| H14 | C4' | C5' | H16 | 57.9° | 172.7° |
