VA6
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.49Å | |
| C4' | C5' | sing | 1.53Å | 1.41Å | |
| C4' | O4' | sing | 1.43Å | 1.60Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| O1B | PB | doub | 1.48Å | 1.52Å | |
| O4' | C1' | sing | 1.44Å | 1.29Å | |
| C3' | C2' | sing | 1.55Å | 1.34Å | |
| C2' | C1' | sing | 1.55Å | 1.61Å | |
| O2B | PB | sing | 1.61Å | 1.52Å | |
| O3G | PG | doub | 1.48Å | 1.56Å | |
| C1' | N9 | sing | 1.47Å | 1.38Å | |
| PB | O3A | sing | 1.61Å | 1.64Å | |
| PB | C3B | sing | 1.82Å | 1.81Å | |
| O1A | PA | doub | 1.48Å | 1.54Å | |
| O5' | PA | sing | 1.61Å | 1.56Å | |
| O1G | PG | sing | 1.61Å | 1.51Å | |
| N3 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| N3 | C4 | sing | 1.33Å | 1.41Å | Aromatic |
| O3A | PA | sing | 1.61Å | 1.51Å | |
| PA | O2A | sing | 1.61Å | 1.61Å | |
| PG | C3B | sing | 1.82Å | 1.82Å | |
| PG | O2G | sing | 1.61Å | 1.46Å | |
| F1B | C3B | sing | 1.40Å | 1.33Å | |
| N9 | C4 | sing | 1.37Å | 1.35Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| C3B | F2B | sing | 1.40Å | 1.41Å | |
| C2 | N1 | sing | 1.32Å | 1.33Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.42Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| N1 | C6 | doub | 1.33Å | 1.40Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.36Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.43Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.38Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| N6 | H2 | sing | 0.97Å | 1.00Å | |
| N6 | H3 | sing | 0.97Å | 1.00Å | |
| C8 | H4 | sing | 1.08Å | 1.08Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| O2B | H6 | sing | 0.97Å | 0.95Å | |
| O1G | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O2A | H10 | sing | 0.97Å | 0.95Å | |
| O2G | H11 | sing | 0.97Å | 0.95Å | |
| C3' | H12 | sing | 1.09Å | 1.10Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| C4' | H14 | sing | 1.09Å | 1.10Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| C5' | H16 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 116.8° | 111.1° |
| O3' | C3' | C2' | 110.8° | 110.8° |
| O3' | C3' | H12 | 108.5° | 110.7° |
| C3' | O3' | H13 | 109.5° | 114.0° |
| C5' | C4' | O4' | 110.8° | 109.8° |
| C5' | C4' | C3' | 113.1° | 109.7° |
| C4' | C5' | O5' | 113.0° | 109.4° |
| C5' | C4' | H14 | 111.0° | 109.8° |
| C4' | C5' | H15 | 108.6° | 109.5° |
| C4' | C5' | H16 | 108.6° | 109.5° |
| O4' | C4' | C3' | 104.0° | 107.6° |
| C4' | O4' | C1' | 92.8° | 109.9° |
| O4' | C4' | H14 | 108.4° | 109.9° |
| C4' | C3' | C2' | 102.0° | 102.3° |
| C4' | C3' | H12 | 107.9° | 110.9° |
| C3' | C4' | H14 | 109.2° | 110.0° |
| C5' | O5' | PA | 119.9° | 123.0° |
| O5' | C5' | H15 | 108.6° | 109.5° |
| O5' | C5' | H16 | 108.6° | 109.5° |
| O1B | PB | O2B | 108.0° | 109.4° |
| O1B | PB | O3A | 111.9° | 109.5° |
| O1B | PB | C3B | 108.2° | 109.5° |
| O4' | C1' | C2' | 104.1° | 105.2° |
| O4' | C1' | N9 | 126.0° | 110.3° |
| O4' | C1' | H5 | 101.8° | 110.3° |
| C3' | C2' | C1' | 90.1° | 100.9° |
| C3' | C2' | H8 | 114.1° | 111.1° |
| C3' | C2' | H9 | 114.1° | 111.2° |
| C2' | C3' | H12 | 110.6° | 110.8° |
| C2' | C1' | N9 | 119.4° | 110.3° |
| C2' | C1' | H5 | 99.4° | 110.3° |
| C1' | C2' | H8 | 114.1° | 111.1° |
| C1' | C2' | H9 | 114.1° | 111.1° |
| O2B | PB | O3A | 109.0° | 109.5° |
| O2B | PB | C3B | 109.9° | 109.5° |
| PB | O2B | H6 | 109.5° | 114.0° |
| O3G | PG | O1G | 113.5° | 109.5° |
| O3G | PG | C3B | 108.2° | 109.5° |
| O3G | PG | O2G | 107.3° | 109.5° |
| C1' | N9 | C4 | 131.3° | 126.3° |
| C1' | N9 | C8 | 119.8° | 126.3° |
| N9 | C1' | H5 | 101.0° | 110.2° |
| O3A | PB | C3B | 109.9° | 109.5° |
| PB | O3A | PA | 129.4° | 134.0° |
| PB | C3B | PG | 112.2° | 109.5° |
| PB | C3B | F1B | 111.1° | 109.5° |
| PB | C3B | F2B | 109.9° | 109.5° |
| O1A | PA | O5' | 106.0° | 109.5° |
| O1A | PA | O3A | 112.7° | 109.5° |
| O1A | PA | O2A | 108.0° | 109.5° |
| O5' | PA | O3A | 107.9° | 109.5° |
| O5' | PA | O2A | 111.0° | 109.5° |
| O1G | PG | C3B | 112.0° | 109.4° |
| O1G | PG | O2G | 107.6° | 109.4° |
| PG | O1G | H7 | 109.5° | 113.9° |
| C2 | N3 | C4 | 120.6° | 120.6° |
| N3 | C2 | N1 | 123.2° | 122.5° |
| N3 | C2 | H1 | 118.4° | 118.8° |
| N3 | C4 | N9 | 136.1° | 134.9° |
| N3 | C4 | C5 | 118.1° | 119.1° |
| O3A | PA | O2A | 111.2° | 109.5° |
| PA | O2A | H10 | 109.5° | 114.0° |
| C3B | PG | O2G | 108.0° | 109.5° |
| PG | C3B | F1B | 104.6° | 109.5° |
| PG | C3B | F2B | 108.7° | 109.5° |
| PG | O2G | H11 | 109.5° | 114.0° |
| F1B | C3B | F2B | 110.2° | 109.5° |
| C4 | N9 | C8 | 108.7° | 107.4° |
| N9 | C4 | C5 | 105.8° | 106.0° |
| N9 | C8 | N7 | 110.3° | 110.0° |
| N9 | C8 | H4 | 124.9° | 125.0° |
| C2 | N1 | C6 | 120.3° | 121.2° |
| N1 | C2 | H1 | 118.4° | 118.8° |
| C4 | C5 | N7 | 107.3° | 107.2° |
| C4 | C5 | C6 | 118.9° | 118.2° |
| C8 | N7 | C5 | 108.0° | 109.4° |
| N7 | C8 | H4 | 124.8° | 125.0° |
| N1 | C6 | C5 | 118.9° | 118.4° |
| N1 | C6 | N6 | 122.2° | 120.8° |
| N7 | C5 | C6 | 133.8° | 134.7° |
| C5 | C6 | N6 | 119.0° | 120.8° |
| C6 | N6 | H2 | 109.5° | 120.0° |
| C6 | N6 | H3 | 109.4° | 120.0° |
| H2 | N6 | H3 | 109.5° | 120.0° |
| H8 | C2' | H9 | 109.4° | 111.0° |
| H15 | C5' | H16 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | C5' | 93.5° | 100.9° |
| O3' | C3' | C4' | O4' | 146.2° | 139.7° |
| O3' | C3' | C4' | C2' | 121.0° | 118.3° |
| O3' | C3' | C4' | H12 | 122.5° | 123.6° |
| O3' | C3' | C2' | H12 | 120.4° | 123.4° |
| O3' | C3' | C2' | C1' | 173.8° | 152.6° |
| O3' | C3' | C2' | H8 | 69.6° | 34.7° |
| O3' | C3' | C2' | H9 | 57.2° | 89.5° |
| O3' | C3' | C4' | H14 | 30.7° | 20.1° |
| C5' | C4' | O4' | C3' | 121.8° | 119.3° |
| C5' | C4' | O4' | H14 | 122.1° | 120.9° |
| C5' | C4' | C3' | H14 | 124.2° | 120.9° |
| C4' | C5' | O5' | H15 | 120.5° | 120.0° |
| C4' | C5' | O5' | H16 | 120.5° | 120.0° |
| C5' | C4' | O4' | C1' | 101.7° | 117.8° |
| C5' | C4' | C3' | C2' | 145.4° | 140.9° |
| C4' | C5' | O5' | PA | 127.2° | 180.0° |
| C5' | C4' | C3' | H12 | 28.9° | 22.7° |
| C4' | C5' | H15 | H16 | 118.4° | 120.0° |
| O4' | C4' | C3' | H14 | 115.6° | 119.7° |
| O4' | C4' | C5' | O5' | 58.6° | 66.5° |
| O4' | C4' | C3' | C2' | 25.2° | 21.5° |
| C4' | O4' | C1' | C2' | 51.7° | 24.3° |
| C4' | O4' | C1' | N9 | 164.4° | 143.2° |
| C4' | O4' | C1' | H5 | 51.3° | 94.7° |
| O4' | C4' | C3' | H12 | 91.3° | 96.7° |
| O4' | C4' | C5' | H15 | 62.0° | 173.6° |
| O4' | C4' | C5' | H16 | 179.1° | 53.5° |
| C3' | C4' | C5' | O5' | 57.7° | 175.5° |
| C3' | C4' | O4' | C1' | 20.0° | 1.5° |
| C4' | C3' | C2' | H12 | 114.6° | 118.2° |
| C4' | C3' | C2' | C1' | 48.7° | 34.1° |
| C4' | C3' | C2' | H8 | 165.3° | 83.8° |
| C4' | C3' | C2' | H9 | 67.8° | 152.1° |
| C4' | C3' | O3' | H13 | 180.0° | 174.4° |
| C3' | C4' | C5' | H15 | 178.2° | 55.5° |
| C3' | C4' | C5' | H16 | 62.9° | 64.6° |
| C5' | O5' | PA | O1A | 52.7° | 55.0° |
| C5' | O5' | PA | O3A | 68.3° | 175.0° |
| C5' | O5' | PA | O2A | 169.7° | 65.0° |
| O5' | C5' | C4' | H14 | 179.1° | 54.4° |
| O5' | C5' | H15 | H16 | 118.4° | 120.0° |
| O1B | PB | O2B | O3A | 121.7° | 120.0° |
| O1B | PB | O2B | C3B | 117.8° | 120.0° |
| O1B | PB | O3A | C3B | 120.2° | 120.0° |
| O1B | PB | O3A | PA | 19.3° | 60.0° |
| O1B | PB | C3B | PG | 15.7° | 60.0° |
| O1B | PB | C3B | F1B | 101.0° | 180.0° |
| O1B | PB | C3B | F2B | 136.8° | 60.0° |
| O1B | PB | O2B | H6 | 0.0° | 180.0° |
| O4' | C1' | C2' | C3' | 72.8° | 36.4° |
| O4' | C1' | C2' | N9 | 146.9° | 119.0° |
| O4' | C1' | C2' | H5 | 104.8° | 119.0° |
| O4' | C1' | N9 | H5 | 113.5° | 122.1° |
| O4' | C1' | N9 | C4 | 91.6° | 157.8° |
| O4' | C1' | N9 | C8 | 94.3° | 22.2° |
| O4' | C1' | C2' | H8 | 170.7° | 81.5° |
| O4' | C1' | C2' | H9 | 43.8° | 154.3° |
| C1' | O4' | C4' | H14 | 136.2° | 121.3° |
| C3' | C2' | C1' | H8 | 116.6° | 117.9° |
| C3' | C2' | C1' | H9 | 116.6° | 118.0° |
| C3' | C2' | C1' | N9 | 140.4° | 155.3° |
| C3' | C2' | C1' | H5 | 32.0° | 82.6° |
| C3' | C2' | H8 | H9 | 129.2° | 124.3° |
| C2' | C3' | O3' | H13 | 63.8° | 61.4° |
| C2' | C3' | C4' | H14 | 90.3° | 98.2° |
| C2' | C1' | N9 | H5 | 107.5° | 122.1° |
| C2' | C1' | N9 | C4 | 47.5° | 86.4° |
| C2' | C1' | N9 | C8 | 126.7° | 93.7° |
| C1' | C2' | H8 | H9 | 129.2° | 124.2° |
| C1' | C2' | C3' | H12 | 65.8° | 84.0° |
| O2B | PB | O3A | C3B | 120.5° | 120.0° |
| O2B | PB | O3A | PA | 138.6° | 60.0° |
| O2B | PB | C3B | PG | 133.4° | 60.0° |
| O2B | PB | C3B | F1B | 16.7° | 60.0° |
| O2B | PB | C3B | F2B | 105.5° | 180.0° |
| O3G | PG | C3B | PB | 91.0° | 60.0° |
| O3G | PG | O1G | C3B | 122.9° | 120.0° |
| O3G | PG | O1G | O2G | 118.6° | 120.0° |
| O3G | PG | C3B | O2G | 115.8° | 120.1° |
| O3G | PG | C3B | F1B | 29.5° | 60.0° |
| O3G | PG | C3B | F2B | 147.2° | 180.0° |
| O3G | PG | O1G | H7 | 0.0° | 60.0° |
| O3G | PG | O2G | H11 | 0.0° | 180.0° |
| C1' | N9 | C4 | N3 | 5.3° | 0.0° |
| C1' | N9 | C4 | C8 | 174.6° | 179.9° |
| C1' | N9 | C4 | C5 | 176.3° | 180.0° |
| C1' | N9 | C8 | N7 | 177.1° | 180.0° |
| C1' | N9 | C8 | H4 | 2.9° | 0.1° |
| N9 | C1' | C2' | H8 | 23.8° | 37.4° |
| N9 | C1' | C2' | H9 | 103.0° | 86.7° |
| PB | O3A | PA | O1A | 2.7° | 40.0° |
| PB | O3A | PA | O5' | 113.9° | 160.0° |
| PB | O3A | PA | O2A | 124.2° | 80.0° |
| O3A | PB | C3B | PG | 106.7° | 180.0° |
| O3A | PB | C3B | F1B | 136.6° | 60.0° |
| O3A | PB | C3B | F2B | 14.4° | 60.0° |
| O3A | PB | O2B | H6 | 121.7° | 60.0° |
| PB | C3B | PG | O1G | 34.8° | 180.0° |
| C3B | PB | O3A | PA | 100.9° | 180.0° |
| PB | C3B | PG | F1B | 120.5° | 120.0° |
| PB | C3B | PG | F2B | 121.8° | 120.0° |
| PB | C3B | PG | O2G | 153.2° | 60.0° |
| PB | C3B | F1B | F2B | 122.0° | 120.0° |
| C3B | PB | O2B | H6 | 117.8° | 60.0° |
| O1A | PA | O5' | O3A | 121.0° | 120.0° |
| O1A | PA | O5' | O2A | 117.0° | 120.0° |
| O1A | PA | O3A | O2A | 121.4° | 120.0° |
| O1A | PA | O2A | H10 | 0.0° | 179.9° |
| O5' | PA | O3A | O2A | 121.9° | 120.0° |
| O5' | PA | O2A | H10 | 115.7° | 59.9° |
| PA | O5' | C5' | H15 | 112.3° | 60.0° |
| PA | O5' | C5' | H16 | 6.7° | 60.0° |
| O1G | PG | C3B | O2G | 118.3° | 120.0° |
| O1G | PG | C3B | F1B | 155.3° | 60.0° |
| O1G | PG | C3B | F2B | 87.0° | 60.0° |
| O1G | PG | O2G | H11 | 122.5° | 60.0° |
| C2 | N3 | C4 | N9 | 178.1° | 180.0° |
| N3 | C2 | N1 | H1 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| N3 | C2 | N1 | C6 | 0.4° | 0.1° |
| N3 | C4 | N9 | C5 | 178.4° | 180.0° |
| N3 | C4 | N9 | C8 | 179.9° | 180.0° |
| C4 | N3 | C2 | N1 | 0.1° | 0.0° |
| N3 | C4 | C5 | N7 | 179.8° | 180.0° |
| N3 | C4 | C5 | C6 | 0.0° | 0.0° |
| C4 | N3 | C2 | H1 | 179.9° | 180.0° |
| O3A | PA | O2A | H10 | 124.2° | 60.1° |
| PG | C3B | F1B | F2B | 116.7° | 120.0° |
| C3B | PG | O1G | H7 | 122.9° | 180.0° |
| C3B | PG | O2G | H11 | 116.4° | 59.9° |
| O2G | PG | C3B | F1B | 86.3° | 180.0° |
| O2G | PG | C3B | F2B | 31.4° | 59.9° |
| O2G | PG | O1G | H7 | 118.6° | 60.0° |
| C4 | N9 | C8 | N7 | 1.7° | 0.1° |
| N9 | C4 | C5 | N7 | 1.0° | 0.0° |
| N9 | C4 | C5 | C6 | 178.7° | 180.0° |
| C4 | N9 | C8 | H4 | 178.3° | 180.0° |
| C4 | N9 | C1' | H5 | 155.0° | 35.7° |
| C8 | N9 | C4 | C5 | 1.6° | 0.0° |
| N9 | C8 | N7 | H4 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 1.1° | 0.1° |
| C8 | N9 | C1' | H5 | 19.2° | 144.3° |
| C2 | N1 | C6 | C5 | 0.6° | 0.1° |
| C2 | N1 | C6 | N6 | 179.4° | 180.0° |
| C4 | C5 | N7 | C8 | 0.0° | 0.0° |
| C4 | C5 | C6 | N1 | 0.3° | 0.0° |
| C4 | C5 | N7 | C6 | 179.7° | 179.9° |
| C4 | C5 | C6 | N6 | 179.6° | 180.0° |
| C8 | N7 | C5 | C6 | 179.7° | 180.0° |
| N1 | C6 | C5 | N7 | 179.3° | 179.9° |
| N1 | C6 | C5 | N6 | 179.9° | 180.0° |
| C6 | N1 | C2 | H1 | 179.6° | 179.9° |
| N1 | C6 | N6 | H2 | 0.0° | 0.0° |
| N1 | C6 | N6 | H3 | 120.0° | 180.0° |
| N7 | C5 | C6 | N6 | 0.8° | 0.1° |
| C5 | N7 | C8 | H4 | 178.9° | 180.0° |
| C5 | C6 | N6 | H2 | 179.9° | 180.0° |
| C5 | C6 | N6 | H3 | 60.1° | 0.0° |
| C6 | N6 | H2 | H3 | 120.0° | 180.0° |
| H5 | C1' | C2' | H8 | 84.6° | 159.5° |
| H5 | C1' | C2' | H9 | 148.6° | 35.3° |
| H8 | C2' | C3' | H12 | 50.8° | 158.0° |
| H9 | C2' | C3' | H12 | 177.6° | 33.9° |
| H12 | C3' | O3' | H13 | 57.8° | 62.0° |
| H12 | C3' | C4' | H14 | 153.2° | 143.6° |
| H14 | C4' | C5' | H15 | 58.5° | 65.5° |
| H14 | C4' | C5' | H16 | 60.4° | 174.4° |
