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SummaryGeometryRelated PDB entries

V9D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O12N11sing1.42Å1.41Å
N11C10sing1.35Å1.46Å
O13C10doub1.22Å1.19Å
C10C09sing1.48Å1.54Å
C09C08doub1.40Å1.39ÅAromatic
C09C14sing1.39Å1.40ÅAromatic
C08C07sing1.38Å1.38ÅAromatic
C14C05doub1.39Å1.40ÅAromatic
C07C06doub1.38Å1.38ÅAromatic
C05C06sing1.40Å1.39ÅAromatic
C05C02sing1.48Å1.54Å
C02O01doub1.22Å1.19Å
C02N03sing1.35Å1.45Å
N03O04sing1.42Å1.41Å
C06H1sing1.08Å1.08Å
C07H2sing1.08Å1.08Å
C08H3sing1.08Å1.08Å
C14H4sing1.08Å1.08Å
N03H5sing0.97Å1.00Å
N11H6sing0.97Å1.00Å
O04H7sing0.97Å0.95Å
O12H8sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O12N11C10118.6°120.0°
O12N11H6120.7°120.0°
N11O12H8109.5°114.0°
N11C10O13118.1°120.0°
N11C10C09122.8°120.0°
C10N11H6120.7°120.0°
O13C10C09119.1°120.0°
C10C09C08117.0°120.1°
C10C09C14123.0°120.0°
C08C09C14120.0°119.9°
C09C08C07120.2°120.2°
C09C08H3119.9°120.0°
C09C14C05119.6°119.7°
C09C14H4120.2°120.2°
C08C07C06119.7°120.3°
C08C07H2120.2°119.9°
C07C08H3119.9°119.9°
C14C05C06119.3°119.9°
C14C05C02123.1°120.0°
C05C14H4120.2°120.2°
C07C06C05121.2°120.2°
C07C06H1119.4°119.9°
C06C07H2120.2°119.9°
C06C05C02117.6°120.1°
C05C06H1119.4°120.0°
C05C02O01122.9°120.0°
C05C02N03120.7°120.0°
O01C02N03116.3°120.0°
C02N03O04117.6°120.0°
C02N03H5121.2°120.0°
O04N03H5121.2°120.0°
N03O04H7109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O12N11C10H6180.0°180.0°
O12N11C10O130.2°0.0°
O12N11C10C09179.7°180.0°
N11C10O13C09179.8°180.0°
N11C10C09C08159.3°0.0°
N11C10C09C1420.7°179.7°
C10N11O12H80.1°180.0°
O13C10C09C0820.5°180.0°
O13C10C09C14159.5°0.3°
O13C10N11H6179.8°180.0°
C10C09C08C14180.0°179.7°
C10C09C08C07180.0°180.0°
C10C09C14C05179.8°179.7°
C10C09C08H30.0°0.0°
C10C09C14H40.2°0.3°
C09C10N11H60.3°0.0°
C09C08C07H3180.0°180.0°
C08C09C14C050.3°0.7°
C09C08C07C060.0°0.0°
C09C08C07H2179.9°180.0°
C08C09C14H4179.7°180.0°
C14C09C08C070.0°0.3°
C09C14C05H4180.0°179.3°
C09C14C05C060.5°0.7°
C09C14C05C02180.0°179.7°
C14C09C08H3180.0°179.7°
C08C07C06H2180.0°180.0°
C08C07C06C050.2°0.0°
C08C07C06H1179.8°180.0°
C14C05C06C070.5°0.3°
C14C05C06C02179.5°179.7°
C14C05C02O0190.1°0.3°
C14C05C02N0391.6°180.0°
C14C05C06H1179.6°179.7°
C07C06C05H1180.0°180.0°
C07C06C05C02180.0°180.0°
C06C07C08H3180.0°180.0°
C06C05C02O0190.4°179.9°
C06C05C02N0387.9°0.3°
C05C06C07H2179.8°180.0°
C06C05C14H4179.5°180.0°
C05C02O01N03178.4°179.8°
C05C02N03O04179.2°179.7°
C02C05C06H10.0°0.0°
C02C05C14H40.0°0.3°
C05C02N03H50.8°0.3°
O01C02N03O040.8°0.0°
O01C02N03H5179.2°179.9°
C02N03O04H5180.0°180.0°
C02N03O04H70.4°180.0°
H1C06C07H20.1°0.0°
H2C07C08H30.1°0.0°
H5N03O04H7179.6°0.0°
H6N11O12H8179.9°0.0°

222415

PDB entries from 2024-07-10

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