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Summary Geometry Related PDB entries

V8L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C5	C6	doub	1.38Å	1.34Å	Aromatic
C5	C4	sing	1.38Å	1.35Å	Aromatic
C6	C7	sing	1.38Å	1.32Å	Aromatic
C4	C3	doub	1.38Å	1.34Å	Aromatic
C7	C2	doub	1.39Å	1.37Å	Aromatic
C3	C2	sing	1.39Å	1.34Å	Aromatic
C2	N1	sing	1.40Å	1.43Å
N1	N	sing	1.40Å	1.32Å
N	C1	sing	1.35Å	1.36Å
O	C1	doub	1.21Å	1.14Å
C1	C	sing	1.51Å	1.49Å
N1	H1	sing	0.97Å	1.00Å
C7	H2	sing	1.08Å	1.08Å
C5	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C4	H5	sing	1.08Å	1.08Å
C3	H6	sing	1.08Å	1.08Å
C	H7	sing	1.09Å	1.10Å
C	H8	sing	1.09Å	1.10Å
C	H9	sing	1.09Å	1.10Å
N	H10	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C5	C4	120.7°	120.2°
C5	C6	C7	119.8°	120.0°
C6	C5	H3	119.6°	119.9°
C5	C6	H4	120.1°	120.0°
C5	C4	C3	120.1°	120.1°
C4	C5	H3	119.7°	119.9°
C5	C4	H5	119.9°	119.9°
C6	C7	C2	119.6°	120.0°
C6	C7	H2	120.2°	120.0°
C7	C6	H4	120.1°	120.0°
C4	C3	C2	118.9°	119.9°
C3	C4	H5	119.9°	120.0°
C4	C3	H6	120.5°	120.0°
C7	C2	C3	120.7°	119.8°
C7	C2	N1	116.4°	120.1°
C2	C7	H2	120.2°	120.0°
C3	C2	N1	122.9°	120.0°
C2	C3	H6	120.5°	120.1°
C2	N1	N	105.8°	120.0°
C2	N1	H1	110.4°	119.9°
N1	N	C1	131.0°	120.0°
N	N1	H1	110.4°	120.0°
N1	N	H10	114.5°	120.0°
N	C1	O	114.0°	120.0°
N	C1	C	124.5°	120.0°
C1	N	H10	114.5°	120.0°
O	C1	C	120.8°	120.0°
C1	C	H7	109.5°	109.5°
C1	C	H8	109.5°	109.5°
C1	C	H9	109.5°	109.6°
H7	C	H8	109.5°	109.4°
H7	C	H9	109.5°	109.5°
H8	C	H9	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C5	C4	H3	180.0°	179.9°
C5	C6	C7	H4	180.0°	180.0°
C6	C5	C4	C3	1.3°	0.3°
C5	C6	C7	C2	1.0°	0.0°
C5	C6	C7	H2	179.0°	179.7°
C6	C5	C4	H5	178.7°	179.9°
C4	C5	C6	C7	0.4°	0.0°
C5	C4	C3	H5	180.0°	179.8°
C5	C4	C3	C2	0.8°	0.5°
C4	C5	C6	H4	179.6°	179.9°
C5	C4	C3	H6	179.2°	179.9°
C6	C7	C2	H2	180.0°	179.7°
C6	C7	C2	C3	1.5°	0.2°
C6	C7	C2	N1	179.8°	179.7°
C7	C6	C5	H3	179.6°	180.0°
C4	C3	C2	C7	0.6°	0.4°
C4	C3	C2	H6	180.0°	179.6°
C4	C3	C2	N1	179.1°	179.5°
C3	C4	C5	H3	178.7°	179.8°
C7	C2	C3	N1	178.6°	179.9°
C7	C2	N1	N	95.4°	180.0°
C7	C2	N1	H1	24.0°	0.2°
C2	C7	C6	H4	179.0°	180.0°
C7	C2	C3	H6	179.4°	180.0°
C3	C2	N1	N	83.2°	0.1°
C3	C2	N1	H1	157.4°	179.7°
C3	C2	C7	H2	178.5°	179.9°
C2	C3	C4	H5	179.2°	179.8°
C2	N1	N	H1	119.4°	179.8°
C2	N1	N	C1	95.2°	179.8°
N1	C2	C7	H2	0.2°	0.0°
N1	C2	C3	H6	0.8°	0.1°
C2	N1	N	H10	84.8°	0.2°
N1	N	C1	H10	180.0°	180.0°
N1	N	C1	O	152.8°	0.0°
N1	N	C1	C	17.1°	180.0°
N	C1	O	C	170.4°	180.0°
C1	N	N1	H1	145.4°	0.0°
N	C1	C	H7	169.3°	180.0°
N	C1	C	H8	70.7°	60.1°
N	C1	C	H9	49.3°	60.0°
O	C1	C	H7	0.0°	0.0°
O	C1	C	H8	120.0°	120.0°
O	C1	C	H9	120.0°	120.0°
O	C1	N	H10	27.2°	180.0°
C1	C	H7	H8	120.0°	120.0°
C1	C	H7	H9	120.0°	120.1°
C1	C	H8	H9	120.0°	120.1°
C	C1	N	H10	162.9°	0.0°
H1	N1	N	H10	34.6°	180.0°
H2	C7	C6	H4	1.0°	0.2°
H3	C5	C6	H4	0.4°	0.0°
H3	C5	C4	H5	1.3°	0.0°
H5	C4	C3	H6	0.8°	0.2°
H7	C	H8	H9	120.0°	119.9°

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