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Summary Geometry Related PDB entries

V7Z

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N04	S01	sing	1.66Å	1.66Å
O02	S01	doub	1.42Å	1.39Å
S01	C05	sing	1.81Å	1.76Å
S01	O03	doub	1.42Å	1.39Å
C05	H1	sing	1.09Å	1.10Å
C05	H2	sing	1.09Å	1.10Å
C05	H3	sing	1.09Å	1.10Å
N04	H4	sing	0.97Å	1.00Å
N04	H5	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N04	S01	O02	114.1°	104.3°
N04	S01	C05	106.4°	104.4°
N04	S01	O03	106.1°	104.3°
S01	N04	H4	109.5°	120.0°
S01	N04	H5	109.5°	120.0°
O02	S01	C05	108.2°	110.5°
O02	S01	O03	111.1°	121.1°
C05	S01	O03	110.7°	110.5°
S01	C05	H1	109.5°	109.5°
S01	C05	H2	109.5°	109.5°
S01	C05	H3	109.5°	109.5°
H1	C05	H2	109.4°	109.5°
H1	C05	H3	109.4°	109.5°
H2	C05	H3	109.5°	109.5°
H4	N04	H5	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N04	S01	O02	C05	118.2°	111.7°
N04	S01	O02	O03	120.0°	116.8°
N04	S01	C05	O03	114.9°	111.6°
N04	S01	C05	H1	180.0°	60.0°
N04	S01	C05	H2	60.0°	180.0°
N04	S01	C05	H3	60.0°	60.0°
S01	N04	H4	H5	120.0°	180.0°
O02	S01	C05	O03	122.0°	136.8°
O02	S01	C05	H1	56.9°	171.6°
O02	S01	C05	H2	176.9°	68.4°
O02	S01	C05	H3	63.1°	51.6°
O02	S01	N04	H4	180.0°	64.0°
O02	S01	N04	H5	60.0°	116.0°
S01	C05	H1	H2	120.0°	120.0°
S01	C05	H1	H3	120.0°	120.0°
S01	C05	H2	H3	120.0°	120.0°
C05	S01	N04	H4	60.7°	180.0°
C05	S01	N04	H5	179.2°	0.0°
O03	S01	C05	H1	65.1°	51.6°
O03	S01	C05	H2	54.9°	68.4°
O03	S01	C05	H3	174.9°	171.6°
O03	S01	N04	H4	57.2°	64.0°
O03	S01	N04	H5	62.8°	116.0°
H1	C05	H2	H3	120.0°	120.0°

226262

PDB entries from 2024-10-16

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